Clone RE70942 Report

Search the DGRC for RE70942

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:709
Well:42
Vector:pFlc-1
Associated Gene/TranscriptJon99Ci-RA
Protein status:RE70942.pep: gold
Preliminary Size:819
Sequenced Size:923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31039 2001-12-13 Blastp of sequenced clone
CG17951 2002-01-01 Sim4 clustering to Release 2
CG7877 2002-01-01 Sim4 clustering to Release 2
CG31039 2003-01-01 Sim4 clustering to Release 3
Jon99Ci 2008-04-29 Release 5.5 accounting
Jon99Ci 2008-08-15 Release 5.9 accounting
Jon99Ci 2008-12-18 5.12 accounting

Clone Sequence Records

RE70942.complete Sequence

923 bp (923 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070605

> RE70942.complete
AGTGTTTCAATATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCCTTGGG
GTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGCGATCT
GGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAACCTGG
CGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACAGCAAC
GGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGGGTGCT
CACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTACTATG
GTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCAGCGAG
AACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTGGCCCT
GATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAATAGAGC
TTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGGTTCAG
GCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAGGATCT
GCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGCTTACT
ACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTCCGGAC
GGAAAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACAAAGGA
GGGTGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGGATGCC
AGGTTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGGAATGG
ATAAAGGAGGAGACTGGAATCTATTATTAAAAAAAAACTTTACTAATTTC
AAAGCAAAAAGGTGCTTAAACAAGTTTTAAATAAATGAAGAACATATGCT
GTTAAAAGAAAAAAAAAAAAAAA

RE70942.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 1102 Jon99Ci-RA 106..1009 1..904 4505 99.8 Plus
Jon99Fi-RA 939 Jon99Fi-RA 127..269 124..269 240 78.7 Plus
Jon25Bii-RA 885 Jon25Bii-RA 225..284 210..269 165 85 Plus
Jon25Bii-RA 885 Jon25Bii-RA 134..212 119..197 155 79.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25747648..25748280 904..274 3050 99.5 Minus
chr3R 27901430 chr3R 25748337..25748610 274..1 1355 99.6 Minus
chr2L 23010047 chr2L 4951951..4952101 269..119 260 78.1 Minus
chr3R 27901430 chr3R 25746771..25746917 269..120 220 78 Minus
chr3R 27901430 chr3R 25744758..25744852 120..214 205 81.1 Plus
chr3R 27901430 chr3R 26311620..26311762 124..269 200 77.4 Plus
chr3R 27901430 chr3R 26310186..26310328 269..124 185 76.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925225..29925855 904..274 3155 100 Minus
3R 32079331 3R 29925912..29926185 274..1 1355 99.6 Minus
2L 23513712 2L 4952851..4953001 269..119 260 78.1 Minus
3R 32079331 3R 30489091..30489233 124..269 230 78.8 Plus
3R 32079331 3R 29924348..29924494 269..120 220 78 Minus
3R 32079331 3R 29922335..29922429 120..214 190 80 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29666056..29666686 904..274 3155 100 Minus
3R 31820162 3R 29666743..29667016 274..1 1355 99.6 Minus
3R 31820162 3R 30229922..30230064 124..269 240 78.7 Plus
3R 31820162 3R 29665179..29665325 269..120 230 78 Minus
3R 31820162 3R 29663166..29663312 120..269 200 76.6 Plus
2L 23513712 2L 4952851..4952910 269..210 165 85 Minus
2L 23513712 2L 4952923..4953001 197..119 155 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 04:11:23 has no hits.

RE70942.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25747644..25748279 275..908 99 <- Minus
chr3R 25748337..25748610 1..274 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:13 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 12..830 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:17 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 12..830 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 12..830 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 12..830 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:22 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 12..830 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..904 1..904 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:17 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..903 1..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 5..907 1..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..904 1..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:22 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 5..907 1..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29925221..29925854 275..908 99 <- Minus
3R 29925912..29926185 1..274 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29925221..29925854 275..908 99 <- Minus
3R 29925912..29926185 1..274 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29925221..29925854 275..908 99 <- Minus
3R 29925912..29926185 1..274 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:15 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25750943..25751576 275..908 99 <- Minus
arm_3R 25751634..25751907 1..274 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:19 Download gff for RE70942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29666052..29666685 275..908 99 <- Minus
3R 29666743..29667016 1..274 99   Minus

RE70942.hyp Sequence

Translation from 2 to 829

> RE70942.hyp
SFNMRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLA
SEGQVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYG
AVNYNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIEL
PSLDDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYY
GTDTASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQ
VGGPAGFTRVTKYLEWIKEETGIYY*

RE70942.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-PA 272 CG31039-PA 1..272 4..275 1471 100 Plus
Jon99Fi-PA 267 CG18030-PA 1..267 4..275 722 51.5 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 4..275 717 50.7 Plus
Jon66Ci-PA 260 CG7118-PA 5..259 7..275 702 52.4 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 4..275 701 50.7 Plus

RE70942.pep Sequence

Translation from 11 to 829

> RE70942.pep
MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEG
QVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVN
YNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSL
DDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTD
TASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQVGG
PAGFTRVTKYLEWIKEETGIYY*

RE70942.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16222-PA 272 GF16222-PA 1..272 1..272 1224 81.6 Plus
Dana\GF16221-PA 272 GF16221-PA 1..272 1..272 1145 76.1 Plus
Dana\GF16220-PA 272 GF16220-PA 1..272 1..272 1076 70.2 Plus
Dana\GF24394-PA 260 GF24394-PA 21..260 24..272 650 50.6 Plus
Dana\GF12374-PA 271 GF12374-PA 25..271 25..272 646 51.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11986-PA 272 GG11986-PA 1..272 1..272 1411 97.1 Plus
Dere\GG11754-PA 267 GG11754-PA 15..267 16..272 689 53.1 Plus
Dere\GG11933-PA 267 GG11933-PA 34..267 37..272 687 56.3 Plus
Dere\GG14309-PA 260 GG14309-PA 20..259 23..272 668 52.8 Plus
Dere\GG11987-PA 265 GG11987-PA 32..265 37..272 662 54.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15026-PA 259 GH15026-PA 21..259 24..272 682 53.4 Plus
Dgri\GH16447-PA 265 GH16447-PA 1..264 1..272 681 49.5 Plus
Dgri\GH15028-PA 268 GH15028-PA 1..268 1..272 674 51.1 Plus
Dgri\GH16448-PA 267 GH16448-PA 23..266 24..272 632 48.6 Plus
Dgri\GH15024-PA 274 GH15024-PA 1..274 1..272 616 48 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-PA 272 CG31039-PA 1..272 1..272 1471 100 Plus
Jon99Fi-PA 267 CG18030-PA 1..267 1..272 722 51.5 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 1..272 717 50.7 Plus
Jon66Ci-PA 260 CG7118-PA 5..259 4..272 702 52.4 Plus
Jon99Cii-PA 265 CG31034-PA 1..265 1..272 701 50.7 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 1..272 701 50.7 Plus
Jon99Ciii-PA 265 CG31362-PA 1..265 1..272 701 50.7 Plus
Jon44E-PB 271 CG8579-PB 7..271 9..272 701 51.5 Plus
Jon44E-PA 271 CG8579-PA 7..271 9..272 701 51.5 Plus
Jon25Bii-PB 276 CG8869-PB 37..276 35..272 701 53.3 Plus
Jon25Bii-PA 276 CG8869-PA 37..276 35..272 701 53.3 Plus
Jon66Cii-PA 262 CG7170-PA 5..261 4..272 677 48.7 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..272 677 50.5 Plus
Jon65Aiii-PA 274 CG6483-PA 1..274 1..272 668 48.4 Plus
Jon65Ai-PB 262 CG10475-PB 1..262 4..272 654 46.5 Plus
Jon65Ai-PA 262 CG10475-PA 1..262 4..272 654 46.5 Plus
Jon25Biii-PA 258 CG8871-PA 33..258 37..272 650 51.7 Plus
Jon65Aii-PA 259 CG6580-PA 33..259 37..272 623 50.2 Plus
CG10477-PB 272 CG10477-PB 1..272 1..272 610 45.1 Plus
CG10477-PA 272 CG10477-PA 1..272 1..272 610 45.1 Plus
yip7-PA 270 CG6457-PA 1..270 1..270 599 46.2 Plus
Jon65Aiv-PA 271 CG6467-PA 4..271 6..270 553 43.9 Plus
CG3088-PA 252 CG3088-PA 29..252 41..272 537 42.2 Plus
CG18180-PA 264 CG18180-PA 31..264 36..272 516 43.8 Plus
CG8329-PA 259 CG8329-PA 29..258 35..272 474 41 Plus
CG18179-PA 268 CG18179-PA 35..268 36..272 473 41.7 Plus
CG7542-PB 270 CG7542-PB 23..260 37..264 434 41.7 Plus
CG7542-PA 270 CG7542-PA 23..260 37..264 434 41.7 Plus
CG10472-PA 290 CG10472-PA 45..285 39..270 404 38.8 Plus
CG6592-PA 438 CG6592-PA 122..363 40..270 390 38.7 Plus
Jon74E-PC 271 CG6298-PC 22..270 30..272 386 39 Plus
CG6462-PA 319 CG6462-PA 73..317 37..270 352 37.1 Plus
CG11529-PA 287 CG11529-PA 59..260 69..269 329 37.9 Plus
CG8952-PA 276 CG8952-PA 34..274 37..270 302 36.1 Plus
CG9676-PA 251 CG9676-PA 24..251 37..270 279 34.4 Plus
CG31954-PA 277 CG31954-PA 4..277 1..270 263 29.1 Plus
CG5246-PA 272 CG5246-PA 1..263 1..266 261 30.4 Plus
CG32808-PA 284 CG32808-PA 25..262 36..271 260 31.7 Plus
CG3355-PA 314 CG3355-PA 75..306 40..268 247 30.7 Plus
CG16749-PA 265 CG16749-PA 20..259 32..266 245 31.5 Plus
CG34458-PA 257 CG34458-PA 4..257 1..270 243 31 Plus
CG4613-PC 374 CG4613-PC 136..366 40..268 242 30 Plus
CG4613-PB 374 CG4613-PB 136..366 40..268 242 30 Plus
CG7432-PB 721 CG7432-PB 473..719 39..268 241 30.4 Plus
epsilonTry-PA 256 CG18681-PA 8..250 9..265 238 31.7 Plus
CG4914-PA 374 CG4914-PA 125..364 38..268 237 30.8 Plus
Try29F-PD 267 CG9564-PD 33..267 32..270 230 29.4 Plus
Try29F-PC 267 CG9564-PC 33..267 32..270 230 29.4 Plus
CG32523-PA 262 CG32523-PA 33..262 37..270 226 30.2 Plus
CG31265-PA 266 CG31265-PA 1..257 4..267 226 28.6 Plus
CG11912-PA 271 CG11912-PA 1..266 1..266 226 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16681-PA 269 GI16681-PA 1..269 4..272 696 51.8 Plus
Dmoj\GI16680-PA 259 GI16680-PA 4..258 6..272 684 51.3 Plus
Dmoj\GI16704-PA 264 GI16704-PA 22..263 25..272 682 55 Plus
Dmoj\GI16703-PA 264 GI16703-PA 22..263 25..272 667 53.8 Plus
Dmoj\GI16705-PA 258 GI16705-PA 5..257 4..272 633 48.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13497-PA 268 GL13497-PA 1..268 4..272 1076 71.7 Plus
Dper\GL26494-PA 276 GL26494-PA 5..276 4..272 700 52.4 Plus
Dper\GL13500-PA 265 GL13500-PA 32..265 37..272 688 55.5 Plus
Dper\GL13498-PA 265 GL13498-PA 32..265 37..272 675 54.6 Plus
Dper\GL13499-PA 265 GL13499-PA 32..265 37..272 675 54.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15958-PA 268 GA15958-PA 1..268 4..272 1078 72.1 Plus
Dpse\GA21380-PA 276 GA21380-PA 5..276 4..272 700 52.4 Plus
Dpse\GA26869-PA 265 GA26869-PA 32..265 37..272 685 55 Plus
Dpse\GA20115-PA 260 GA20115-PA 20..260 23..272 677 52.4 Plus
Dpse\GA26868-PA 265 GA26868-PA 32..265 37..272 675 54.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24943-PA 262 GM24943-PA 5..261 4..272 660 48.4 Plus
Dsec\GM25051-PA 260 GM25051-PA 20..259 23..272 658 52.4 Plus
Dsec\GM14741-PA 274 GM14741-PA 1..274 1..272 642 48.2 Plus
Dsec\GM13877-PA 272 GM13877-PA 1..272 1..272 632 44.9 Plus
Dsec\GM13875-PA 262 GM13875-PA 1..262 4..272 630 46.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17560-PA 280 GD17560-PA 9..280 1..272 1414 97.1 Plus
Dsim\GD17554-PA 273 GD17554-PA 5..273 4..272 1236 83.6 Plus
Dsim\GD21522-PA 267 GD21522-PA 34..267 37..272 687 55.5 Plus
Dsim\GD17046-PA 269 GD17046-PA 36..269 37..272 681 55.5 Plus
Dsim\GD11483-PA 269 GD11483-PA 36..269 37..272 680 55.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12444-PA 266 GJ12444-PA 22..265 23..272 672 52.8 Plus
Dvir\GJ12442-PA 264 GJ12442-PA 22..263 25..272 648 52.6 Plus
Dvir\GJ11121-PA 258 GJ11121-PA 20..258 23..272 628 52.4 Plus
Dvir\GJ12931-PA 258 GJ12931-PA 20..258 23..272 628 52.4 Plus
Dvir\GJ12930-PA 274 GJ12930-PA 1..274 1..272 625 50.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14091-PA 271 GK14091-PA 14..271 15..272 1089 76.4 Plus
Dwil\GK14090-PA 275 GK14090-PA 21..275 20..272 1032 73.7 Plus
Dwil\GK16895-PA 259 GK16895-PA 20..259 23..272 678 54 Plus
Dwil\GK16889-PA 275 GK16889-PA 1..275 1..272 674 48 Plus
Dwil\GK16897-PA 259 GK16897-PA 20..259 23..272 669 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Ser99Dc-PA 272 GE11147-PA 1..272 1..272 1409 96.7 Plus
Dyak\GE10882-PA 267 GE10882-PA 15..267 16..272 690 53.1 Plus
Dyak\GE21529-PA 274 GE21529-PA 1..274 1..272 686 50 Plus
Dyak\GE23384-PA 265 GE23384-PA 15..265 16..272 680 52.1 Plus
Dyak\GE21311-PA 264 GE21311-PA 10..263 4..272 678 49.4 Plus