Clone RE70955 Report

Search the DGRC for RE70955

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:709
Well:55
Vector:pFlc-1
Associated Gene/TranscriptCG9925-RA
Protein status:RE70955.pep: gold
Preliminary Size:2934
Sequenced Size:3201

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9925 2001-12-17 Blastp of sequenced clone
CG9925 2002-01-01 Sim4 clustering to Release 2
CG9925 2003-01-01 Sim4 clustering to Release 3
CG9925 2008-04-29 Release 5.5 accounting
CG9925 2008-08-15 Release 5.9 accounting
CG9925 2008-12-18 5.12 accounting

Clone Sequence Records

RE70955.complete Sequence

3201 bp (3201 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071649

> RE70955.complete
CTCTTTCTTCCCACGTTCGTTCAATGCACTGAAGCGCGTGCCCAGCGAGC
TTCGAATTTAAACGCGTTTAGTGAACGTATCGCATGTTTGTGAGTTGTGA
ATCGCGCACTTAAATTCTAAAGGATTCCACCTTTTTCAAAACGAAAACAT
AGAAAGTTCTCGTCCAGCGTAAATAGATTTTCACTTTGTATTTCATCGCG
TGCTAAAAGTTCTGTTAGCGCCATTTTGCTGCGTTTCCTTTAACGCGCCG
TTCTTTCATTCACACGTTCTTGCGTTGTTACTTTGAATTGAAGAAATGGA
AAAGTCGGAGGAAAAGACATGCGTCGTCTGTGGCACTCCGACCAGATTGA
TGTGCCAGCGGTGTGGAGAACCGTACTGCAATGAAAAGTGCCAGAAATTG
GATTGGCAGAGGCACAGGCAGGTGTGCATCATTATGCCACCCTTGGTGGA
GTGCCGGCCTCTTCAACCGGCGTTGAATCCAATCCAGAGCGTAGAGAACC
AAGTTGCTCTGGCTAAAACTCGCACTAAATCGCCAATCCCATGTGTGGAG
CCCACAGTTGCTGTGCCGAACAAGCCGGATCTATCGGAAAACTGGCGCAA
ACATTTGCTGCCGTCGGGCATGGAGTTTTTCAAGTGCCGCGTGACTTTCA
TGGAGAACGATGGACCCATTTGGGTGGTGCACGTGGCGAATGTGGAGGCC
ATTGAGCGAATGACGGTCAACATGCAGCGCTGCATGCAGAATAAGAAGAT
GATTCGTATGGAAGGAGTGCGGGAGGACACCCTCGTGGCCATCAGTGTGG
GCGACAAGGTCCATCGCGGTCATGTTTTGACGGTTTGCCAAAAGAAGCAA
GAAGCCAATGTCCGTATGATTGACCACGGTCAGATAGTAGCTACACCGTT
TCGGGATATCTACACCATTGTGCCCAAGATGGCCGAAAGCAAGGCGTTCG
CTTTCCGTGTTCAATTGCCCACGAACACTGGAGTTCAGGACATTAAGAAC
TTGACGCTCCGTATGTTGGGAACCAAAACCAGCGACGGAGCTTATCACGT
CCATCTAAAGCCCAAGATGATAATACCACTAAGTTTGCCCTTGGAGATGC
TGCAGCTTAATCCAGAAGTCAAAGTCATCCGGGTCTTTAAGGCAAATCCA
AAGCATAACGAACCGCAGCTGGCCCTACTCCAGATCAACGTGATGGGCCA
TGTCAACGCAGACTTAAACAACCGCATAGCCGAGAAGCCAAGACAGCCAT
TCACGCTGCCCTTCCCCGAGCAGAAATCCATCTTCTTTGCGGCCACCCGC
ACTAAAAATGGTTATCGGCGAGCTTTCCTATTGGATCATATCATGAAACC
GAGGCCAACCTATTTGGTTTACGAAATGGACGAGGGTAGAGTGTCCATAG
CCACCGATCTGAGTCGTATTCCCAGCGAACTACTTGGCCTGCCCAGTCGA
GTGTTTGCCGCTCAGCTGGAGGACTCCGTACCCGAGGAGCTTGAGACTCA
AGGTGCAGAACTCACGGTCAAGTTTAAGCTGGATAATAAGCCGCCCAAGG
AAAAGTTACGCGCGGCGAATGCCGCCTTGAATTCCAAGGGCGAGCAGATA
TGTATGGCCCGTCTGATCACTTTCTTGGGTCAGATTTCATATTTAGGCCA
CAAGTACTGGCGTGAACCCATCGTCCATGATTCCATCGTATTCATTTCCC
ACTTGGTCAGCTTTAAGGAGGTATACATCAGCACTCCAGACGCCAAGCAG
TATGCGGAAATTTTCAAGCGCCTGGAGTACAAGTGCGCTACCATTACCAA
ATCTAGTGATGTTTCCGTTGGCAGCATCGTGCTCGTTGTCTCCAAGCAGA
TGGGTCACTTCCGGGGCGAGATATTGAGTAAGGATAGTGGATTGTTCGAA
GTAATGAACGTTGATACTGGTGCCACCCAAAAGGTGGAGTTGGCGGAAAT
ACGCAGCTCCTGTCGCTTCCTGGAGAATTTGCCCGTATGTCTGATGCGTG
TACAGTTGCAGAATGTCTGCAATATTCCGGATGCAGCTGTGCCAGTTAAC
AATGCGGCCATTCAAATGCTGCACAAGCTCTGCGCCCAAAAAGAACTGCT
AAAATTGAACATGGTAGATGCAACTACATCGACCGTGGACCTGCTGTTCA
GCTCCGGCGATTCGCGCTCCTTGACGACCCAAATGTTGCCTCTTATATTT
ACACCGGTACAGGAAAAAGCAGAAGTTGCACCACCGAAGGCTGCTTCTAC
TCCGAGTCAATTGCCTGTTGTAACTCACAAACAGCAGAAGGTGTCTCCAC
AGTCTCTACTTCTGCTGGATCTGCCTCCACTGCCGCCCTCTCCACCGGAG
TCGCCTTTTCCTGCCGACGTGACAAGTACAAAGTCAGCTTCCCACGTTCT
GCCCATTAAACGCTTCCTTTTCGACGCTTTGCCCAAGAATCTAGCTCCTT
TAGGCGACAAGGTCAACCTAATCCTTATGAACGCTGACGGATTGCCGCAA
ACTGGCTACATCACCGCCGCCTACTTCAAGGACGAAAAGGCGGCCAAGGA
ATTTGAAAAAATCCTTAGCTTGACATCAAGTCAGGGAGCATGTGACCACA
ATGTTGTTCCGGGTTACGTACCAAACGTTGGTGAACTGTGCCTGGCGATC
TACAGCGAAGATAAGAACTGGTATCGCGGAGTCTGCCAGGAGGTTAAGGA
CAATATGGTCAAAATTCTATTCTGCGATTTTGGAAATACGGAATATGTGG
CCGTGAGACACGTGAAACCGATTTCACAGGATTTGCTAATTGCCGTCAAT
GTCACAAAGTGCTATATAAATGGCTTCGACAAATCAAAGAATTTTGCGGC
TCTGGAGCAGTTTCTTGTGCGTAAGATTCGATTCTTATGCGGAGTTAAGA
AAGGCCCTGAACCCGATACTCGTCTCATTACAATTCCGGATATGGAGACT
ATTCTAAACACACCAGTTGCATAATTTAACTTAAGAACTCGCATTCCTTC
ATATGACTTTAGCATTAAGTGTACACCAAAAGTGTATGTTCAAACATTAT
TTCGATATTCGATATAAGTTTCGACCACAGTGTATTTTCGAACATGATTT
TGACAATTATTCGCTTACATTTATTCCAGCACAGAGTGATTCGACTAAGA
GACTTGACACCATATAAAGATGTTGATCGTTCATACAAAAAAAAAAAAAA
A

RE70955.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9925-RA 3450 CG9925-RA 191..3377 1..3187 15935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9787126..9788557 1870..439 7160 100 Minus
chr3R 27901430 chr3R 9786306..9787062 2625..1869 3785 100 Minus
chr3R 27901430 chr3R 9788642..9789079 438..1 2190 100 Minus
chr3R 27901430 chr3R 9785624..9785988 3186..2822 1825 100 Minus
chr3R 27901430 chr3R 9786048..9786245 2823..2626 990 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13962216..13963647 1870..439 7160 100 Minus
3R 32079331 3R 13961396..13962152 2625..1869 3785 100 Minus
3R 32079331 3R 13963732..13964169 438..1 2190 100 Minus
3R 32079331 3R 13960713..13961078 3187..2822 1830 100 Minus
3R 32079331 3R 13961138..13961335 2823..2626 990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13703047..13704478 1870..439 7160 100 Minus
3R 31820162 3R 13702227..13702983 2625..1869 3785 100 Minus
3R 31820162 3R 13704563..13705000 438..1 2190 100 Minus
3R 31820162 3R 13701544..13701909 3187..2822 1830 100 Minus
3R 31820162 3R 13701969..13702166 2823..2626 990 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:11:26 has no hits.

RE70955.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:22 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9785624..9785987 2823..3186 100 <- Minus
chr3R 9786049..9786245 2626..2822 100 <- Minus
chr3R 9786306..9787060 1871..2625 100 <- Minus
chr3R 9787126..9788557 439..1870 100 <- Minus
chr3R 9788642..9789079 1..438 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:14 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..2679 296..2974 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:32 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..2679 296..2974 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:06:04 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..2679 296..2974 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:17 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..2679 296..2974 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:51 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..2679 296..2974 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:40 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..3186 1..3186 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:31 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..3186 1..3186 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:04 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..3186 1..3186 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:18 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 1..3186 1..3186 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:51 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9925-RA 6..3191 1..3186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:22 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13960714..13961077 2823..3186 100 <- Minus
3R 13961139..13961335 2626..2822 100 <- Minus
3R 13961396..13962150 1871..2625 100 <- Minus
3R 13962216..13963647 439..1870 100 <- Minus
3R 13963732..13964169 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:22 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13960714..13961077 2823..3186 100 <- Minus
3R 13961139..13961335 2626..2822 100 <- Minus
3R 13961396..13962150 1871..2625 100 <- Minus
3R 13962216..13963647 439..1870 100 <- Minus
3R 13963732..13964169 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:22 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13960714..13961077 2823..3186 100 <- Minus
3R 13961139..13961335 2626..2822 100 <- Minus
3R 13961396..13962150 1871..2625 100 <- Minus
3R 13962216..13963647 439..1870 100 <- Minus
3R 13963732..13964169 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:04 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9786436..9786799 2823..3186 100 <- Minus
arm_3R 9786861..9787057 2626..2822 100 <- Minus
arm_3R 9787118..9787872 1871..2625 100 <- Minus
arm_3R 9787938..9789369 439..1870 100 <- Minus
arm_3R 9789454..9789891 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:19 Download gff for RE70955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13701545..13701908 2823..3186 100 <- Minus
3R 13701970..13702166 2626..2822 100 <- Minus
3R 13702227..13702981 1871..2625 100 <- Minus
3R 13703047..13704478 439..1870 100 <- Minus
3R 13704563..13705000 1..438 100   Minus

RE70955.pep Sequence

Translation from 295 to 2973

> RE70955.pep
MEKSEEKTCVVCGTPTRLMCQRCGEPYCNEKCQKLDWQRHRQVCIIMPPL
VECRPLQPALNPIQSVENQVALAKTRTKSPIPCVEPTVAVPNKPDLSENW
RKHLLPSGMEFFKCRVTFMENDGPIWVVHVANVEAIERMTVNMQRCMQNK
KMIRMEGVREDTLVAISVGDKVHRGHVLTVCQKKQEANVRMIDHGQIVAT
PFRDIYTIVPKMAESKAFAFRVQLPTNTGVQDIKNLTLRMLGTKTSDGAY
HVHLKPKMIIPLSLPLEMLQLNPEVKVIRVFKANPKHNEPQLALLQINVM
GHVNADLNNRIAEKPRQPFTLPFPEQKSIFFAATRTKNGYRRAFLLDHIM
KPRPTYLVYEMDEGRVSIATDLSRIPSELLGLPSRVFAAQLEDSVPEELE
TQGAELTVKFKLDNKPPKEKLRAANAALNSKGEQICMARLITFLGQISYL
GHKYWREPIVHDSIVFISHLVSFKEVYISTPDAKQYAEIFKRLEYKCATI
TKSSDVSVGSIVLVVSKQMGHFRGEILSKDSGLFEVMNVDTGATQKVELA
EIRSSCRFLENLPVCLMRVQLQNVCNIPDAAVPVNNAAIQMLHKLCAQKE
LLKLNMVDATTSTVDLLFSSGDSRSLTTQMLPLIFTPVQEKAEVAPPKAA
STPSQLPVVTHKQQKVSPQSLLLLDLPPLPPSPPESPFPADVTSTKSASH
VLPIKRFLFDALPKNLAPLGDKVNLILMNADGLPQTGYITAAYFKDEKAA
KEFEKILSLTSSQGACDHNVVPGYVPNVGELCLAIYSEDKNWYRGVCQEV
KDNMVKILFCDFGNTEYVAVRHVKPISQDLLIAVNVTKCYINGFDKSKNF
AALEQFLVRKIRFLCGVKKGPEPDTRLITIPDMETILNTPVA*

RE70955.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18797-PA 882 GF18797-PA 1..877 19..887 2029 46.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21599-PA 902 GG21599-PA 1..900 1..890 3528 74.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17400-PA 838 GH17400-PA 1..837 47..891 1556 41 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9925-PA 892 CG9925-PA 1..892 1..892 4634 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22729-PA 907 GI22729-PA 10..903 9..888 1797 41 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23320-PA 869 GL23320-PA 39..865 62..888 1742 42.8 Plus
Dper\GL23354-PA 663 GL23354-PA 19..67 3..51 158 49 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22128-PA 918 GA22128-PA 10..914 9..888 1842 42 Plus
Dpse\GA21963-PA 662 GA21963-PA 19..67 3..51 158 49 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25895-PA 896 GM25895-PA 1..896 1..892 3920 83 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20465-PA 896 GD20465-PA 1..896 1..892 3896 82.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24667-PA 889 GJ24667-PA 9..885 8..888 1980 46.5 Plus
Dvir\GJ24407-PA 587 GJ24407-PA 15..102 9..98 169 37.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22481-PA 841 GK22481-PA 1..837 19..888 1740 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24570-PA 904 GE24570-PA 1..902 1..890 3445 73.2 Plus

RE70955.hyp Sequence

Translation from 295 to 2973

> RE70955.hyp
MEKSEEKTCVVCGTPTRLMCQRCGEPYCNEKCQKLDWQRHRQVCIIMPPL
VECRPLQPALNPIQSVENQVALAKTRTKSPIPCVEPTVAVPNKPDLSENW
RKHLLPSGMEFFKCRVTFMENDGPIWVVHVANVEAIERMTVNMQRCMQNK
KMIRMEGVREDTLVAISVGDKVHRGHVLTVCQKKQEANVRMIDHGQIVAT
PFRDIYTIVPKMAESKAFAFRVQLPTNTGVQDIKNLTLRMLGTKTSDGAY
HVHLKPKMIIPLSLPLEMLQLNPEVKVIRVFKANPKHNEPQLALLQINVM
GHVNADLNNRIAEKPRQPFTLPFPEQKSIFFAATRTKNGYRRAFLLDHIM
KPRPTYLVYEMDEGRVSIATDLSRIPSELLGLPSRVFAAQLEDSVPEELE
TQGAELTVKFKLDNKPPKEKLRAANAALNSKGEQICMARLITFLGQISYL
GHKYWREPIVHDSIVFISHLVSFKEVYISTPDAKQYAEIFKRLEYKCATI
TKSSDVSVGSIVLVVSKQMGHFRGEILSKDSGLFEVMNVDTGATQKVELA
EIRSSCRFLENLPVCLMRVQLQNVCNIPDAAVPVNNAAIQMLHKLCAQKE
LLKLNMVDATTSTVDLLFSSGDSRSLTTQMLPLIFTPVQEKAEVAPPKAA
STPSQLPVVTHKQQKVSPQSLLLLDLPPLPPSPPESPFPADVTSTKSASH
VLPIKRFLFDALPKNLAPLGDKVNLILMNADGLPQTGYITAAYFKDEKAA
KEFEKILSLTSSQGACDHNVVPGYVPNVGELCLAIYSEDKNWYRGVCQEV
KDNMVKILFCDFGNTEYVAVRHVKPISQDLLIAVNVTKCYINGFDKSKNF
AALEQFLVRKIRFLCGVKKGPEPDTRLITIPDMETILNTPVA*

RE70955.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9925-PA 892 CG9925-PA 1..892 1..892 4634 100 Plus