Clone RE71014 Report

Search the DGRC for RE71014

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:710
Well:14
Vector:pFlc-1
Associated Gene/TranscriptCG7781-RA
Protein status:RE71014.pep: gold
Sequenced Size:1844

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7781 2001-12-13 Blastp of sequenced clone
CG7781 2002-01-01 Sim4 clustering to Release 2
CG7781 2003-01-01 Sim4 clustering to Release 3
CG7781 2008-04-29 Release 5.5 accounting
CG7781 2008-08-15 Release 5.9 accounting
CG7781 2008-12-18 5.12 accounting

Clone Sequence Records

RE71014.complete Sequence

1844 bp (1844 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070606

> RE71014.complete
CAGTCGTTTGCCGTTTGTCAACCGTTAGCCAGCGTTTGCCGTGAGCGCTA
GTTTCTTGCAAGGAATTTATATATATAAAGATAACTACTATATATATAAA
TAAAGTGGAAGCAGTCCATGTTCAGTGATAGCAACTGAATCGGAATCCGC
AAAATCGGTGTTTCTAAAGTCGCCAGAAACCCAAATAGTTCAACTAATAT
TTAGTGTTCAGCTAAAAAGTGTTTCAAGCATATTTCGAAAAAAATGCAGT
ACATCTATGTGATTAGTGCGCTGATTTTGGCCATCGCCGTGCAGCAAGGA
TATGCCATCAAGTGCTTTGTCTGCAACAGCCACAAAGACGCCAACTGTGC
GCTGGACATACCGCCGGACAATCTGCTGAAGGACTGCGATGAGCAGTACT
CGTCCCGTGGCAAGGGAATACCCACATACTGCCGCAAGATTACGCAGATC
ATCGAGTTCTCGGTGAACAGCCTGCCCCCGGATAGCCGTGTGATTAGGAC
CTGTGCCTATCAGAATCAGACCTCCACCAACTATTGCTATCAGCGTGCCG
GTTTTGGTGGTCGGCAGGTGGTCTGCTCCTGCGATACGGATAACTGCAAC
GGAGCCGGAGCGATGGGCGCATCGGCGTTGGGCGTGGCAGCCATGGTGGG
CCTCCTGCTGAGCGCCCGTCAGTATCTGCAGCGTTAAGGACGAAAATATC
GAGGGTGTCCCTCAGTTGTTTTTGTTTGTTTTATCGATGCATCCACCCAG
TTTTTCTTTCGTATTGCTGCTGCTGACTCTTTGACTTCTGTGACACTTTC
ACCGCTTTCTCCCGCCCCCCTTCACATCATTAACAAGGTCCACTCGCAGA
GCTGCTCCAGAGTCAGCTCTGGCCCAGCCTGATTTTGTAACATTTTTTGA
ATGGAGAACCGTAAAAGCTTTATACAAAGTATTAAATAATAACATAACTC
CCTAACTAGAAGTGTATATAAAAAAACCAAAGAGAGCATGTAAACAATTG
GCCAATATAATCGTTCAAATCTTTTTACATTAACAGGCATTTTGCAAACT
AACGTATTAAACGAAATCAAGGAAAATAACGATTAAATAAAACTAAAACC
TACCGCAGTTGAAAGTATTAAACAAATCGAAAATAACGAATAAGTCAAAG
ATGGCCACAAAAGCTAACGATGTTAAAAATTAAGGCTACCCACAAAATAA
AAGTAGTACATAGTAAATGTTAACACTCTTCGCCTTAGTTTGTCTATTTT
TATTTAACACAAGACTCGAACTAAATTTCGGCAATAGCTAACATTAAAAA
ATTAAACAATTTTAACGTAATGCTCAACGAGGCGAACACTTCATAGAATA
ATTAGCAAGCAATTGGGTCGAAGGTCGTCCCTGGATAATCCAAAATGATA
GTTGTGACACGCTTAGGGGCGACGACCACGCCCAGCCCACATCTCCGCAC
TCCCAAGGGGAAAAACACTCGTTGTTGTAACCAACTGCCAAAAAGGATAA
CTTTGAAGTCGTTTCATCTACCGCATAGGCACCACCATCCCAGCAATGAG
AAAATGAATATACCAAACTATTGGGATAACCAGTAGGGTAATGAAACCTA
ATGAAACCTTTTTGTCCAAAGTAGCAAATAATTGCAGATTGCAGAATCAA
AGAAATACATTAAAACGTTACACAAACCGAAGCAACAAATACATTGTTTT
TAGTTCTTTTAGCAAAATAACAGTTTATAGTAAAAAATTTTTTAGTTAAG
AATCTCCTCTTAAATGCAATATTTGTAATGCAATAAAATTGTAAAATGTT
TAAAGTGAAAAACAATAAATATGAATACAAAAAAAAAAAAAAAA

RE71014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RA 1985 CG7781-RA 154..1985 1..1832 9145 99.9 Plus
CG7787-RA 1006 CG7787-RA 919..1006 1832..1745 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8320208..8321173 1828..863 4755 99.5 Minus
chr2L 23010047 chr2L 8321235..8321628 866..473 1970 100 Minus
chr2L 23010047 chr2L 8323871..8324169 299..1 1495 100 Minus
chr2L 23010047 chr2L 8321700..8321875 472..297 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8321276..8322245 1832..863 4835 99.9 Minus
2L 23513712 2L 8322309..8322702 866..473 1970 100 Minus
2L 23513712 2L 8324958..8325256 299..1 1495 100 Minus
2L 23513712 2L 8322774..8322949 472..297 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8321276..8322245 1832..863 4835 99.8 Minus
2L 23513712 2L 8322309..8322702 866..473 1970 100 Minus
2L 23513712 2L 8324958..8325256 299..1 1495 100 Minus
2L 23513712 2L 8322774..8322949 472..297 880 100 Minus
Blast to na_te.dros performed 2019-03-16 04:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3003..3084 1779..1692 119 64.8 Minus

RE71014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:22 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8320208..8321169 867..1828 99 <- Minus
chr2L 8321235..8321628 473..866 100 <- Minus
chr2L 8321700..8321873 299..472 100 <- Minus
chr2L 8323872..8324169 1..298 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:16 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 244..687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:43 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 244..687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:29 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 244..687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:41:51 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 244..687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:38 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 244..687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:41 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 44..1871 1..1828 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:43 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 44..1871 1..1828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:29 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 7..1834 1..1828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:41:51 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 44..1871 1..1828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:38 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 7..1834 1..1828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:22 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8322774..8322947 299..472 100 <- Minus
2L 8322309..8322702 473..866 100 <- Minus
2L 8321280..8322241 867..1828 99 <- Minus
2L 8324959..8325256 1..298 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:22 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8322774..8322947 299..472 100 <- Minus
2L 8322309..8322702 473..866 100 <- Minus
2L 8321280..8322241 867..1828 99 <- Minus
2L 8324959..8325256 1..298 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:22 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8322774..8322947 299..472 100 <- Minus
2L 8322309..8322702 473..866 100 <- Minus
2L 8321280..8322241 867..1828 99 <- Minus
2L 8324959..8325256 1..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:29 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8321280..8322241 867..1828 99 <- Minus
arm_2L 8322309..8322702 473..866 100 <- Minus
arm_2L 8322774..8322947 299..472 100 <- Minus
arm_2L 8324959..8325256 1..298 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:48 Download gff for RE71014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8321280..8322241 867..1828 99 <- Minus
2L 8322309..8322702 473..866 100 <- Minus
2L 8322774..8322947 299..472 100 <- Minus
2L 8324959..8325256 1..298 100   Minus

RE71014.hyp Sequence

Translation from 243 to 686

> RE71014.hyp
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQR*

RE71014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PB 147 CG7781-PB 1..147 1..147 779 100 Plus
CG7781-PA 147 CG7781-PA 1..147 1..147 779 100 Plus
CG14275-PB 148 CG14275-PB 6..144 3..141 147 29.5 Plus
CG14275-PA 148 CG14275-PA 6..144 3..141 147 29.5 Plus
crok-PA 151 CG17218-PA 7..142 5..140 146 32.7 Plus

RE71014.pep Sequence

Translation from 243 to 686

> RE71014.pep
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQR*

RE71014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15263-PA 147 GF15263-PA 1..146 1..146 703 91.1 Plus
Dana\GF14635-PA 148 GF14635-PA 6..139 3..140 164 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23454-PA 147 GG23454-PA 1..147 1..147 769 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10175-PA 148 GH10175-PA 1..148 1..147 682 86.5 Plus
Dgri\GH11591-PA 145 GH11591-PA 4..145 2..147 160 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PB 147 CG7781-PB 1..147 1..147 779 100 Plus
CG7781-PA 147 CG7781-PA 1..147 1..147 779 100 Plus
CG14275-PB 148 CG14275-PB 6..144 3..141 147 29.5 Plus
CG14275-PA 148 CG14275-PA 6..144 3..141 147 29.5 Plus
crok-PA 151 CG17218-PA 7..142 5..140 146 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14231-PA 148 GI14231-PA 1..148 1..147 660 84.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18503-PA 147 GL18503-PA 1..147 1..147 718 91.2 Plus
Dper\GL19613-PA 145 GL19613-PA 23..139 21..139 153 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20584-PA 147 GA20584-PA 1..147 1..147 718 91.2 Plus
Dpse\GA26031-PA 145 GA26031-PA 23..139 21..139 153 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13045-PA 147 GM13045-PA 1..147 1..147 769 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22419-PA 147 GD22419-PA 1..147 1..147 769 99.3 Plus
Dsim\GD23524-PA 148 GD23524-PA 6..144 3..141 137 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20526-PA 148 GJ20526-PA 1..148 1..147 672 86.5 Plus
Dvir\GJ17665-PA 145 GJ17665-PA 5..122 1..124 138 27.5 Plus
Dvir\GJ17714-PA 151 GJ17714-PA 8..135 6..131 133 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24231-PA 147 GK24231-PA 1..147 1..147 667 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11043-PA 147 GE11043-PA 1..147 1..147 769 99.3 Plus
Dyak\GE18754-PA 148 GE18754-PA 6..144 3..141 143 30.7 Plus