BDGP Sequence Production Resources |
Search the DGRC for RE71054
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 710 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CSN6-RA |
Protein status: | RE71054.pep: gold |
Sequenced Size: | 1213 |
Gene | Date | Evidence |
---|---|---|
CG6932 | 2001-12-13 | Blastp of sequenced clone |
CG6932 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6932 | 2003-01-01 | Sim4 clustering to Release 3 |
CSN6 | 2008-04-29 | Release 5.5 accounting |
CSN6 | 2008-08-15 | Release 5.9 accounting |
CSN6 | 2008-12-18 | 5.12 accounting |
1213 bp (1213 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070607
> RE71054.complete AGTACTGAGAGACCACCAATAACGATAACGACAGCTTATACCGGAGCTTG TCAAACAAAAAGAAGTAAAATTAAGTTTATACCGCAAACTACGTGTAAAT AAAGGCCCCCCGACAGCATGGAGCAAATGGAAGTGGACGTTGACATGTCG GCCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGT GGATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTG CAGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATA ATGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCC GCGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTG AGATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACA GTGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGT GTTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCA CTGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGC CCCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCC CCTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCA TGCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGC ATTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAA GAGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGC TAAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCC GGAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTG CCACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACA CGCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAG GGCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGA CCGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATTGATATATGC AAACAATCTATTAAAGCTTCGGAGATAAATACACATAATCGTACGATGAA AAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18404313..18404811 | 1..498 | 98 | -> | Plus |
chr3R | 18404870..18405569 | 499..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 1..1026 | 118..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 1..1026 | 118..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 1..1026 | 118..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 1..1026 | 118..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 1..1026 | 118..1143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 4..1201 | 1..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 4..1201 | 1..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 6..1203 | 1..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 4..1201 | 1..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN6-RA | 6..1203 | 1..1198 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22580778..22581275 | 1..498 | 99 | -> | Plus |
3R | 22581334..22582033 | 499..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22580778..22581275 | 1..498 | 99 | -> | Plus |
3R | 22581334..22582033 | 499..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22580778..22581275 | 1..498 | 99 | -> | Plus |
3R | 22581334..22582033 | 499..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18406500..18406997 | 1..498 | 99 | -> | Plus |
arm_3R | 18407056..18407755 | 499..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22321609..22322106 | 1..498 | 99 | -> | Plus |
3R | 22322165..22322864 | 499..1198 | 100 | Plus |
Translation from 117 to 1142
> RE71054.pep MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18860-PA | 344 | GF18860-PA | 1..344 | 1..341 | 1697 | 90.8 | Plus |
Dana\GF13608-PA | 354 | GF13608-PA | 11..286 | 54..329 | 175 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11147-PA | 340 | GG11147-PA | 1..340 | 1..341 | 1725 | 95.6 | Plus |
Dere\GG22963-PA | 338 | GG22963-PA | 11..286 | 54..329 | 167 | 23.9 | Plus |
Dere\GG11433-PA | 280 | GG11433-PA | 5..265 | 51..311 | 151 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22436-PA | 344 | GH22436-PA | 1..343 | 1..340 | 1573 | 86.3 | Plus |
Dgri\GH20991-PA | 345 | GH20991-PA | 11..286 | 54..329 | 177 | 24.1 | Plus |
Dgri\GH18119-PA | 280 | GH18119-PA | 5..265 | 51..311 | 152 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN6-PA | 341 | CG6932-PA | 1..341 | 1..341 | 1755 | 100 | Plus |
Rpn8-PC | 338 | CG3416-PC | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PA | 338 | CG3416-PA | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PB | 358 | CG3416-PB | 11..280 | 54..321 | 223 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22243-PA | 340 | GI22243-PA | 1..339 | 1..340 | 1543 | 86.5 | Plus |
Dmoj\GI21325-PA | 340 | GI21325-PA | 11..286 | 54..329 | 179 | 25 | Plus |
Dmoj\GI23834-PA | 280 | GI23834-PA | 5..265 | 51..311 | 155 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13811-PA | 347 | GL13811-PA | 1..347 | 1..341 | 1659 | 91.1 | Plus |
Dper\GL20068-PA | 343 | GL20068-PA | 11..286 | 54..329 | 174 | 24.1 | Plus |
Dper\GL21488-PA | 280 | GL21488-PA | 5..265 | 51..311 | 148 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19964-PA | 347 | GA19964-PA | 1..347 | 1..341 | 1659 | 91.1 | Plus |
Dpse\GA17437-PA | 343 | GA17437-PA | 11..286 | 54..329 | 174 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26445-PA | 341 | GM26445-PA | 1..341 | 1..341 | 1845 | 99.4 | Plus |
Dsec\GM11856-PA | 338 | GM11856-PA | 11..286 | 54..329 | 166 | 23.9 | Plus |
Dsec\GM10688-PA | 280 | GM10688-PA | 5..265 | 51..311 | 151 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\CSN6-PA | 341 | GD20964-PA | 1..341 | 1..341 | 1845 | 99.4 | Plus |
Dsim\GD11854-PA | 338 | GD11854-PA | 11..286 | 54..329 | 166 | 23.9 | Plus |
Dsim\GD19663-PA | 280 | GD19663-PA | 5..265 | 51..311 | 151 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23049-PA | 340 | GJ23049-PA | 1..339 | 1..340 | 1580 | 88.2 | Plus |
Dvir\GJ21597-PA | 343 | GJ21597-PA | 11..286 | 54..329 | 173 | 22.3 | Plus |
Dvir\GJ23292-PA | 280 | GJ23292-PA | 5..265 | 51..311 | 149 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11302-PA | 338 | GK11302-PA | 1..338 | 1..341 | 1639 | 88.6 | Plus |
Dwil\GK22207-PA | 342 | GK22207-PA | 11..286 | 54..329 | 175 | 22.3 | Plus |
Dwil\GK14430-PA | 280 | GK14430-PA | 5..265 | 51..311 | 152 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10312-PA | 340 | GE10312-PA | 1..340 | 1..341 | 1731 | 95.9 | Plus |
Dyak\GE14400-PA | 338 | GE14400-PA | 11..286 | 54..329 | 166 | 23.9 | Plus |
Dyak\GE25339-PA | 280 | GE25339-PA | 5..265 | 51..311 | 151 | 22.9 | Plus |
Translation from 117 to 1142
> RE71054.hyp MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN6-PA | 341 | CG6932-PA | 1..341 | 1..341 | 1755 | 100 | Plus |
Rpn8-PC | 338 | CG3416-PC | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PA | 338 | CG3416-PA | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PB | 358 | CG3416-PB | 11..280 | 54..321 | 223 | 23 | Plus |