Clone RE71054 Report

Search the DGRC for RE71054

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:710
Well:54
Vector:pFlc-1
Associated Gene/TranscriptCSN6-RA
Protein status:RE71054.pep: gold
Sequenced Size:1213

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6932 2001-12-13 Blastp of sequenced clone
CG6932 2002-01-01 Sim4 clustering to Release 2
CG6932 2003-01-01 Sim4 clustering to Release 3
CSN6 2008-04-29 Release 5.5 accounting
CSN6 2008-08-15 Release 5.9 accounting
CSN6 2008-12-18 5.12 accounting

Clone Sequence Records

RE71054.complete Sequence

1213 bp (1213 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070607

> RE71054.complete
AGTACTGAGAGACCACCAATAACGATAACGACAGCTTATACCGGAGCTTG
TCAAACAAAAAGAAGTAAAATTAAGTTTATACCGCAAACTACGTGTAAAT
AAAGGCCCCCCGACAGCATGGAGCAAATGGAAGTGGACGTTGACATGTCG
GCCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGT
GGATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTG
CAGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATA
ATGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCC
GCGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTG
AGATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACA
GTGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGT
GTTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCA
CTGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGC
CCCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCC
CCTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCA
TGCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGC
ATTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAA
GAGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGC
TAAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCC
GGAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTG
CCACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACA
CGCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAG
GGCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGA
CCGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATTGATATATGC
AAACAATCTATTAAAGCTTCGGAGATAAATACACATAATCGTACGATGAA
AAAAAAAAAAAAA

RE71054.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1299 CSN6-RA 69..1264 3..1198 5980 100 Plus
Dph5-RA 1240 Dph5-RA 1181..1240 1198..1139 300 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18404866..18405569 495..1198 3460 99.4 Plus
chr3R 27901430 chr3R 18404315..18404814 3..501 2405 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22581331..22582033 496..1198 3515 100 Plus
3R 32079331 3R 22580780..22581278 3..501 2495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22322162..22322864 496..1198 3515 100 Plus
3R 31820162 3R 22321611..22322109 3..501 2495 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:13:47 has no hits.

RE71054.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:38 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18404313..18404811 1..498 98 -> Plus
chr3R 18404870..18405569 499..1198 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:17 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 118..1143 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:46 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 118..1143 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:42 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 118..1143 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:41:54 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 118..1143 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:28 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 118..1143 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:46 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 4..1201 1..1198 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:46 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 4..1201 1..1198 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:42 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 6..1203 1..1198 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:41:54 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 4..1201 1..1198 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:28 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 6..1203 1..1198 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:38 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22580778..22581275 1..498 99 -> Plus
3R 22581334..22582033 499..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:38 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22580778..22581275 1..498 99 -> Plus
3R 22581334..22582033 499..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:38 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22580778..22581275 1..498 99 -> Plus
3R 22581334..22582033 499..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:42 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406500..18406997 1..498 99 -> Plus
arm_3R 18407056..18407755 499..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:52 Download gff for RE71054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22321609..22322106 1..498 99 -> Plus
3R 22322165..22322864 499..1198 100   Plus

RE71054.pep Sequence

Translation from 117 to 1142

> RE71054.pep
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*

RE71054.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18860-PA 344 GF18860-PA 1..344 1..341 1697 90.8 Plus
Dana\GF13608-PA 354 GF13608-PA 11..286 54..329 175 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11147-PA 340 GG11147-PA 1..340 1..341 1725 95.6 Plus
Dere\GG22963-PA 338 GG22963-PA 11..286 54..329 167 23.9 Plus
Dere\GG11433-PA 280 GG11433-PA 5..265 51..311 151 22.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22436-PA 344 GH22436-PA 1..343 1..340 1573 86.3 Plus
Dgri\GH20991-PA 345 GH20991-PA 11..286 54..329 177 24.1 Plus
Dgri\GH18119-PA 280 GH18119-PA 5..265 51..311 152 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-PA 341 CG6932-PA 1..341 1..341 1755 100 Plus
Rpn8-PC 338 CG3416-PC 11..280 54..321 223 23 Plus
Rpn8-PA 338 CG3416-PA 11..280 54..321 223 23 Plus
Rpn8-PB 358 CG3416-PB 11..280 54..321 223 23 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22243-PA 340 GI22243-PA 1..339 1..340 1543 86.5 Plus
Dmoj\GI21325-PA 340 GI21325-PA 11..286 54..329 179 25 Plus
Dmoj\GI23834-PA 280 GI23834-PA 5..265 51..311 155 22.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13811-PA 347 GL13811-PA 1..347 1..341 1659 91.1 Plus
Dper\GL20068-PA 343 GL20068-PA 11..286 54..329 174 24.1 Plus
Dper\GL21488-PA 280 GL21488-PA 5..265 51..311 148 22.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19964-PA 347 GA19964-PA 1..347 1..341 1659 91.1 Plus
Dpse\GA17437-PA 343 GA17437-PA 11..286 54..329 174 24.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26445-PA 341 GM26445-PA 1..341 1..341 1845 99.4 Plus
Dsec\GM11856-PA 338 GM11856-PA 11..286 54..329 166 23.9 Plus
Dsec\GM10688-PA 280 GM10688-PA 5..265 51..311 151 22.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\CSN6-PA 341 GD20964-PA 1..341 1..341 1845 99.4 Plus
Dsim\GD11854-PA 338 GD11854-PA 11..286 54..329 166 23.9 Plus
Dsim\GD19663-PA 280 GD19663-PA 5..265 51..311 151 22.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23049-PA 340 GJ23049-PA 1..339 1..340 1580 88.2 Plus
Dvir\GJ21597-PA 343 GJ21597-PA 11..286 54..329 173 22.3 Plus
Dvir\GJ23292-PA 280 GJ23292-PA 5..265 51..311 149 22.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11302-PA 338 GK11302-PA 1..338 1..341 1639 88.6 Plus
Dwil\GK22207-PA 342 GK22207-PA 11..286 54..329 175 22.3 Plus
Dwil\GK14430-PA 280 GK14430-PA 5..265 51..311 152 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10312-PA 340 GE10312-PA 1..340 1..341 1731 95.9 Plus
Dyak\GE14400-PA 338 GE14400-PA 11..286 54..329 166 23.9 Plus
Dyak\GE25339-PA 280 GE25339-PA 5..265 51..311 151 22.9 Plus

RE71054.hyp Sequence

Translation from 117 to 1142

> RE71054.hyp
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYY*

RE71054.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-PA 341 CG6932-PA 1..341 1..341 1755 100 Plus
Rpn8-PC 338 CG3416-PC 11..280 54..321 223 23 Plus
Rpn8-PA 338 CG3416-PA 11..280 54..321 223 23 Plus
Rpn8-PB 358 CG3416-PB 11..280 54..321 223 23 Plus