Clone RE71279 Report

Search the DGRC for RE71279

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:712
Well:79
Vector:pFlc-1
Associated Gene/TranscripteIF-2gamma-RC
Protein status:RE71279.pep: gold
Sequenced Size:1900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6476 2004-03-31 Blastp of sequenced clone
Su(var)3-9 2008-04-29 Release 5.5 accounting
Su(var)3-9 2008-08-15 Release 5.9 accounting
Su(var)3-9 2008-12-18 5.12 accounting

Clone Sequence Records

RE71279.complete Sequence

1900 bp (1900 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012446

> RE71279.complete
AGTTTCGCGAGGACTACCTGACTGTTGTCATCAATTTTGAGTTGATGCAA
TTCAAGCGACATTCTAACCTCAAAATTGACGGCTTTCCTATATACACACA
TGCATCTGAGAGGGGATGTTTTGTTAGGGGGTGTGGCGGCGGACGTCTCT
AAACTAACGCCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAA
CATCGGCACCATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAG
CCATATCCGGCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAAC
ATCACAATCAAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAA
CCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGG
ACGACAGCTTGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTG
GTGCGACATGTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGC
TACCATGTTGAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTG
CTGGCAATGAATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCC
ATTGAGATTATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGA
TCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAAT
TCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCC
CAGCTTAAGTACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGAT
ACCAGTGCCGCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCC
GATCCTTCGACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGC
GGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGA
GATCGAGGTGCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCA
CCTGCCGTCCAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAAT
GAGCTGCAGTACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGAT
CGATCCTACGCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCG
CCGTTGGCCAGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTAC
CTGCTGCGTCGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGC
GCGCGTTGAGAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGAT
CCCTCAGCACTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAG
ATCGTTCTTACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACT
CAGCAGACGTGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCT
TCGGAGGCAAGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAG
TAGAATTTAGTTAGGATCCGAATGGTTCTACTTTTAAGAACAACATCAGC
GGCAAAAGTGGCAGCATCATCTTTATTAGGCCTCTTCACACTGCTCCTTC
TTGTCCCACAGCTCCATTCTTCCCGTGTCCGTTGATCAAACCGAAACTAA
TTAGTACCAACATGAAATGCATACCTAACTTAATTTATTTTATTGAATTT
TGTTGTCGAGTATGTATATAATATGAAAACACACGATTCGCTTGCGAGTA
TTGTGCATCTATAGCAGAATCAGGCATTAAAAAAGCAACTAATAGGGTAT
ACCTTTATATATTATAATAACTAAAGGCAAATCTGATACATCGTAAAATT
GTTTTTATGATTTAAATACAAAACAAAAACTAAACAAAAAAAAAAAAAAA

RE71279.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-9-RC 2095 Su(var)3-9-RC 70..1966 1..1897 9455 99.8 Plus
Su(var)3-9-RB 2085 Su(var)3-9-RB 200..1956 141..1897 8755 99.8 Plus
Su(var)3-9-RA 2405 Su(var)3-9-RA 193..368 141..316 880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11083140..11084018 1427..549 4380 99.9 Minus
chr3R 27901430 chr3R 11082615..11083073 1885..1427 2280 99.8 Minus
chr3R 27901430 chr3R 11084079..11084317 554..316 1195 100 Minus
chr3R 27901430 chr3R 11087175..11087352 318..141 890 100 Minus
chr3R 27901430 chr3R 11087426..11087567 142..1 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1427..549 4380 99.9 Minus
3R 32079331 3R 15257973..15258443 1897..1427 2325 99.6 Minus
3R 32079331 3R 15259449..15259687 554..316 1195 100 Minus
3R 32079331 3R 15262545..15262722 318..141 890 100 Minus
3R 32079331 3R 15262796..15262937 142..1 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14999341..15000219 1427..549 4380 99.8 Minus
3R 31820162 3R 14998804..14999274 1897..1427 2325 99.5 Minus
3R 31820162 3R 15000280..15000518 554..316 1195 100 Minus
3R 31820162 3R 15003376..15003553 318..141 890 100 Minus
3R 31820162 3R 15003627..15003768 142..1 710 100 Minus
Blast to na_te.dros performed 2019-03-16 06:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 1428..1480 1845..1788 117 70.7 Minus

RE71279.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:42:23 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11084080..11084316 317..553 100 <- Minus
chr3R 11087177..11087351 142..316 100 <- Minus
chr3R 11087427..11087567 1..141 100   Minus
chr3R 11082615..11083072 1428..1885 99 <- Minus
chr3R 11083140..11084013 554..1427 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:23 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1404 100..1503 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:25 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1404 100..1503 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:40:51 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 1..1404 100..1503 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:12 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1404 100..1503 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:19:27 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 1..1404 100..1503 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:03 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1885 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:24 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1885 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:51 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 1..1885 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:13 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1885 1..1885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:19:27 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 1..1885 1..1885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:23 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257985..15258442 1428..1885 99 <- Minus
3R 15258510..15259383 554..1427 100 <- Minus
3R 15259450..15259686 317..553 100 <- Minus
3R 15262547..15262721 142..316 100 <- Minus
3R 15262797..15262937 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:23 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257985..15258442 1428..1885 99 <- Minus
3R 15258510..15259383 554..1427 100 <- Minus
3R 15259450..15259686 317..553 100 <- Minus
3R 15262547..15262721 142..316 100 <- Minus
3R 15262797..15262937 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:23 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257985..15258442 1428..1885 99 <- Minus
3R 15258510..15259383 554..1427 100 <- Minus
3R 15259450..15259686 317..553 100 <- Minus
3R 15262547..15262721 142..316 100 <- Minus
3R 15262797..15262937 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:51 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11083707..11084164 1428..1885 99 <- Minus
arm_3R 11084232..11085105 554..1427 100 <- Minus
arm_3R 11085172..11085408 317..553 100 <- Minus
arm_3R 11088269..11088443 142..316 100 <- Minus
arm_3R 11088519..11088659 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:37 Download gff for RE71279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14998816..14999273 1428..1885 99 <- Minus
3R 14999341..15000214 554..1427 100 <- Minus
3R 15000281..15000517 317..553 100 <- Minus
3R 15003378..15003552 142..316 100 <- Minus
3R 15003628..15003768 1..141 100   Minus

RE71279.hyp Sequence

Translation from 99 to 1502

> RE71279.hyp
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKK*

RE71279.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PC 467 CG43665-PC 1..467 1..467 2380 100 Plus
eIF-2gamma-PD 475 CG43665-PD 23..475 15..467 2310 100 Plus
eIF-2gamma-PB 475 CG43665-PB 23..475 15..467 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 23..89 15..81 284 89.6 Plus
EfSec-PA 511 CG9841-PA 6..230 34..287 201 27.8 Plus

RE71279.pep Sequence

Translation from 99 to 1502

> RE71279.pep
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKK*

RE71279.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11769-PA 1020 GF11769-PA 617..1020 64..467 2055 96.3 Plus
Dana\GF11769-PA 1020 GF11769-PA 23..80 15..72 273 93.1 Plus
Dana\GF13674-PA 456 GF13674-PA 59..365 34..376 208 27.9 Plus
Dana\GF12096-PA 440 GF12096-PA 5..226 33..287 198 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\eIF2gamma-PA 475 GG20759-PA 23..475 15..467 2381 99.8 Plus
Dere\GG20777-PA 512 GG20777-PA 5..230 33..287 194 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18750-PA 1035 GH18750-PA 642..1035 74..467 2009 96.2 Plus
Dgri\GH18750-PA 1035 GH18750-PA 23..100 15..91 269 76.9 Plus
Dgri\GH21181-PA 525 GH21181-PA 2..236 29..287 187 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2gamma-PC 467 CG43665-PC 1..467 1..467 2380 100 Plus
eIF2gamma-PD 475 CG43665-PD 23..475 15..467 2310 100 Plus
eIF2gamma-PB 475 CG43665-PB 23..475 15..467 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 23..89 15..81 284 89.6 Plus
eEFSec-PA 511 CG9841-PA 6..230 34..287 201 27.8 Plus
mEFTu2-PA 456 CG12736-PA 59..365 34..376 198 26.9 Plus
mEFTu1-PB 489 CG6050-PB 84..315 34..286 186 26.4 Plus
mEFTu1-PA 489 CG6050-PA 84..315 34..286 186 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24667-PA 1017 GI24667-PA 618..1017 68..467 2024 95.2 Plus
Dmoj\GI24667-PA 1017 GI24667-PA 23..80 15..72 278 94.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12073-PA 1004 GL12073-PA 622..991 74..443 1934 98.9 Plus
Dper\GL12073-PA 1004 GL12073-PA 23..80 15..72 279 96.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19622-PB 473 GA19622-PB 23..471 15..463 2321 98.4 Plus
Dpse\GA19622-PC 633 GA19622-PC 23..80 15..72 280 96.6 Plus
Dpse\GA22068-PA 512 GA22068-PA 5..230 33..287 180 26.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25792-PA 1024 GM25792-PA 631..1024 74..467 2096 100 Plus
Dsec\GM25792-PA 1024 GM25792-PA 23..80 15..72 289 100 Plus
Dsec\GM15722-PA 512 GM15722-PA 5..230 33..287 192 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20368-PA 1024 GD20368-PA 631..1024 74..467 2095 100 Plus
Dsim\GD20368-PA 1024 GD20368-PA 23..80 15..72 289 100 Plus
Dsim\GD25199-PA 512 GD25199-PA 5..230 33..287 182 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24041-PA 1044 GJ24041-PA 645..1044 68..467 2032 96 Plus
Dvir\GJ24041-PA 1044 GJ24041-PA 23..80 15..72 278 94.8 Plus
Dvir\GJ22318-PA 516 GJ22318-PA 5..230 33..287 205 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12089-PA 1007 GK12089-PA 607..1007 67..467 2024 95.3 Plus
Dwil\GK12089-PA 1007 GK12089-PA 23..80 15..72 278 94.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26397-PA 1026 GE26397-PA 633..1026 74..467 2093 100 Plus
Dyak\GE26397-PA 1026 GE26397-PA 23..80 15..72 287 98.3 Plus
Dyak\GE13715-PA 512 GE13715-PA 5..230 33..287 195 29.5 Plus