BDGP Sequence Production Resources |
Search the DGRC for RE71279
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 712 |
Well: | 79 |
Vector: | pFlc-1 |
Associated Gene/Transcript | eIF-2gamma-RC |
Protein status: | RE71279.pep: gold |
Sequenced Size: | 1900 |
Gene | Date | Evidence |
---|---|---|
CG6476 | 2004-03-31 | Blastp of sequenced clone |
Su(var)3-9 | 2008-04-29 | Release 5.5 accounting |
Su(var)3-9 | 2008-08-15 | Release 5.9 accounting |
Su(var)3-9 | 2008-12-18 | 5.12 accounting |
1900 bp (1900 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012446
> RE71279.complete AGTTTCGCGAGGACTACCTGACTGTTGTCATCAATTTTGAGTTGATGCAA TTCAAGCGACATTCTAACCTCAAAATTGACGGCTTTCCTATATACACACA TGCATCTGAGAGGGGATGTTTTGTTAGGGGGTGTGGCGGCGGACGTCTCT AAACTAACGCCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAA CATCGGCACCATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAG CCATATCCGGCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAAC ATCACAATCAAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAA CCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGG ACGACAGCTTGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTG GTGCGACATGTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGC TACCATGTTGAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTG CTGGCAATGAATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCC ATTGAGATTATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGA TCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAAT TCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCC CAGCTTAAGTACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGAT ACCAGTGCCGCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCC GATCCTTCGACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGC GGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGA GATCGAGGTGCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCA CCTGCCGTCCAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAAT GAGCTGCAGTACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGAT CGATCCTACGCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCG CCGTTGGCCAGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTAC CTGCTGCGTCGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGC GCGCGTTGAGAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGAT CCCTCAGCACTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAG ATCGTTCTTACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACT CAGCAGACGTGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCT TCGGAGGCAAGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAG TAGAATTTAGTTAGGATCCGAATGGTTCTACTTTTAAGAACAACATCAGC GGCAAAAGTGGCAGCATCATCTTTATTAGGCCTCTTCACACTGCTCCTTC TTGTCCCACAGCTCCATTCTTCCCGTGTCCGTTGATCAAACCGAAACTAA TTAGTACCAACATGAAATGCATACCTAACTTAATTTATTTTATTGAATTT TGTTGTCGAGTATGTATATAATATGAAAACACACGATTCGCTTGCGAGTA TTGTGCATCTATAGCAGAATCAGGCATTAAAAAAGCAACTAATAGGGTAT ACCTTTATATATTATAATAACTAAAGGCAAATCTGATACATCGTAAAATT GTTTTTATGATTTAAATACAAAACAAAAACTAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Su(var)3-9-RC | 2095 | Su(var)3-9-RC | 70..1966 | 1..1897 | 9455 | 99.8 | Plus |
Su(var)3-9-RB | 2085 | Su(var)3-9-RB | 200..1956 | 141..1897 | 8755 | 99.8 | Plus |
Su(var)3-9-RA | 2405 | Su(var)3-9-RA | 193..368 | 141..316 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11083140..11084018 | 1427..549 | 4380 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 11082615..11083073 | 1885..1427 | 2280 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 11084079..11084317 | 554..316 | 1195 | 100 | Minus |
chr3R | 27901430 | chr3R | 11087175..11087352 | 318..141 | 890 | 100 | Minus |
chr3R | 27901430 | chr3R | 11087426..11087567 | 142..1 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15258510..15259388 | 1427..549 | 4380 | 99.9 | Minus |
3R | 32079331 | 3R | 15257973..15258443 | 1897..1427 | 2325 | 99.6 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 554..316 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 318..141 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15262796..15262937 | 142..1 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14999341..15000219 | 1427..549 | 4380 | 99.8 | Minus |
3R | 31820162 | 3R | 14998804..14999274 | 1897..1427 | 2325 | 99.5 | Minus |
3R | 31820162 | 3R | 15000280..15000518 | 554..316 | 1195 | 100 | Minus |
3R | 31820162 | 3R | 15003376..15003553 | 318..141 | 890 | 100 | Minus |
3R | 31820162 | 3R | 15003627..15003768 | 142..1 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S2 | 1735 | S2 S2 1735bp | 1428..1480 | 1845..1788 | 117 | 70.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11084080..11084316 | 317..553 | 100 | <- | Minus |
chr3R | 11087177..11087351 | 142..316 | 100 | <- | Minus |
chr3R | 11087427..11087567 | 1..141 | 100 | Minus | |
chr3R | 11082615..11083072 | 1428..1885 | 99 | <- | Minus |
chr3R | 11083140..11084013 | 554..1427 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1404 | 100..1503 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1404 | 100..1503 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-2gamma-RC | 1..1404 | 100..1503 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1404 | 100..1503 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-2gamma-RC | 1..1404 | 100..1503 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1885 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1885 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-2gamma-RC | 1..1885 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)3-9-RC | 1..1885 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-2gamma-RC | 1..1885 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15257985..15258442 | 1428..1885 | 99 | <- | Minus |
3R | 15258510..15259383 | 554..1427 | 100 | <- | Minus |
3R | 15259450..15259686 | 317..553 | 100 | <- | Minus |
3R | 15262547..15262721 | 142..316 | 100 | <- | Minus |
3R | 15262797..15262937 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15257985..15258442 | 1428..1885 | 99 | <- | Minus |
3R | 15258510..15259383 | 554..1427 | 100 | <- | Minus |
3R | 15259450..15259686 | 317..553 | 100 | <- | Minus |
3R | 15262547..15262721 | 142..316 | 100 | <- | Minus |
3R | 15262797..15262937 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15257985..15258442 | 1428..1885 | 99 | <- | Minus |
3R | 15258510..15259383 | 554..1427 | 100 | <- | Minus |
3R | 15259450..15259686 | 317..553 | 100 | <- | Minus |
3R | 15262547..15262721 | 142..316 | 100 | <- | Minus |
3R | 15262797..15262937 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11083707..11084164 | 1428..1885 | 99 | <- | Minus |
arm_3R | 11084232..11085105 | 554..1427 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 317..553 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 142..316 | 100 | <- | Minus |
arm_3R | 11088519..11088659 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14998816..14999273 | 1428..1885 | 99 | <- | Minus |
3R | 14999341..15000214 | 554..1427 | 100 | <- | Minus |
3R | 15000281..15000517 | 317..553 | 100 | <- | Minus |
3R | 15003378..15003552 | 142..316 | 100 | <- | Minus |
3R | 15003628..15003768 | 1..141 | 100 | Minus |
Translation from 99 to 1502
> RE71279.hyp MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI FGGKTITPVLDSQVAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF-2gamma-PC | 467 | CG43665-PC | 1..467 | 1..467 | 2380 | 100 | Plus |
eIF-2gamma-PD | 475 | CG43665-PD | 23..475 | 15..467 | 2310 | 100 | Plus |
eIF-2gamma-PB | 475 | CG43665-PB | 23..475 | 15..467 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 23..89 | 15..81 | 284 | 89.6 | Plus |
EfSec-PA | 511 | CG9841-PA | 6..230 | 34..287 | 201 | 27.8 | Plus |
Translation from 99 to 1502
> RE71279.pep MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI FGGKTITPVLDSQVAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11769-PA | 1020 | GF11769-PA | 617..1020 | 64..467 | 2055 | 96.3 | Plus |
Dana\GF11769-PA | 1020 | GF11769-PA | 23..80 | 15..72 | 273 | 93.1 | Plus |
Dana\GF13674-PA | 456 | GF13674-PA | 59..365 | 34..376 | 208 | 27.9 | Plus |
Dana\GF12096-PA | 440 | GF12096-PA | 5..226 | 33..287 | 198 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\eIF2gamma-PA | 475 | GG20759-PA | 23..475 | 15..467 | 2381 | 99.8 | Plus |
Dere\GG20777-PA | 512 | GG20777-PA | 5..230 | 33..287 | 194 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18750-PA | 1035 | GH18750-PA | 642..1035 | 74..467 | 2009 | 96.2 | Plus |
Dgri\GH18750-PA | 1035 | GH18750-PA | 23..100 | 15..91 | 269 | 76.9 | Plus |
Dgri\GH21181-PA | 525 | GH21181-PA | 2..236 | 29..287 | 187 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF2gamma-PC | 467 | CG43665-PC | 1..467 | 1..467 | 2380 | 100 | Plus |
eIF2gamma-PD | 475 | CG43665-PD | 23..475 | 15..467 | 2310 | 100 | Plus |
eIF2gamma-PB | 475 | CG43665-PB | 23..475 | 15..467 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 23..89 | 15..81 | 284 | 89.6 | Plus |
eEFSec-PA | 511 | CG9841-PA | 6..230 | 34..287 | 201 | 27.8 | Plus |
mEFTu2-PA | 456 | CG12736-PA | 59..365 | 34..376 | 198 | 26.9 | Plus |
mEFTu1-PB | 489 | CG6050-PB | 84..315 | 34..286 | 186 | 26.4 | Plus |
mEFTu1-PA | 489 | CG6050-PA | 84..315 | 34..286 | 186 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24667-PA | 1017 | GI24667-PA | 618..1017 | 68..467 | 2024 | 95.2 | Plus |
Dmoj\GI24667-PA | 1017 | GI24667-PA | 23..80 | 15..72 | 278 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12073-PA | 1004 | GL12073-PA | 622..991 | 74..443 | 1934 | 98.9 | Plus |
Dper\GL12073-PA | 1004 | GL12073-PA | 23..80 | 15..72 | 279 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19622-PB | 473 | GA19622-PB | 23..471 | 15..463 | 2321 | 98.4 | Plus |
Dpse\GA19622-PC | 633 | GA19622-PC | 23..80 | 15..72 | 280 | 96.6 | Plus |
Dpse\GA22068-PA | 512 | GA22068-PA | 5..230 | 33..287 | 180 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25792-PA | 1024 | GM25792-PA | 631..1024 | 74..467 | 2096 | 100 | Plus |
Dsec\GM25792-PA | 1024 | GM25792-PA | 23..80 | 15..72 | 289 | 100 | Plus |
Dsec\GM15722-PA | 512 | GM15722-PA | 5..230 | 33..287 | 192 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20368-PA | 1024 | GD20368-PA | 631..1024 | 74..467 | 2095 | 100 | Plus |
Dsim\GD20368-PA | 1024 | GD20368-PA | 23..80 | 15..72 | 289 | 100 | Plus |
Dsim\GD25199-PA | 512 | GD25199-PA | 5..230 | 33..287 | 182 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24041-PA | 1044 | GJ24041-PA | 645..1044 | 68..467 | 2032 | 96 | Plus |
Dvir\GJ24041-PA | 1044 | GJ24041-PA | 23..80 | 15..72 | 278 | 94.8 | Plus |
Dvir\GJ22318-PA | 516 | GJ22318-PA | 5..230 | 33..287 | 205 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12089-PA | 1007 | GK12089-PA | 607..1007 | 67..467 | 2024 | 95.3 | Plus |
Dwil\GK12089-PA | 1007 | GK12089-PA | 23..80 | 15..72 | 278 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26397-PA | 1026 | GE26397-PA | 633..1026 | 74..467 | 2093 | 100 | Plus |
Dyak\GE26397-PA | 1026 | GE26397-PA | 23..80 | 15..72 | 287 | 98.3 | Plus |
Dyak\GE13715-PA | 512 | GE13715-PA | 5..230 | 33..287 | 195 | 29.5 | Plus |