BDGP Sequence Production Resources |
Search the DGRC for RE71331
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 713 |
Well: | 31 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17734-RA |
Protein status: | RE71331.pep: gold |
Sequenced Size: | 745 |
Gene | Date | Evidence |
---|---|---|
CG17734 | 2001-12-13 | Blastp of sequenced clone |
CG17734 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17734 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17734 | 2008-04-29 | Release 5.5 accounting |
CG17734 | 2008-08-15 | Release 5.9 accounting |
CG17734 | 2008-12-18 | 5.12 accounting |
745 bp (745 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070609
> RE71331.complete GTCCATTGCAGAAAGTTTCGCGAACGTTGCCAAGCGATTAAACCGATCCG AACCGCCCGCGTACATAATATAATATTCGTGAAAATGAGTTCCAAGTCCC TTTTCGACAGCGAGGAGGATGCCGCTCAGGCCAACAAATTATCCAGGAAA GCAAAGGAATCGCCCTTCATGCTTGTGGGTATTACCGGATTCGTGGCCGC CGGATTGATTGGAGCGTACAAGTACCGGAACCGCGGAACGATGAGCACCA GCGTCTTCCTGATGCAGCTGCGAGTCGCCGCCCAGGGAACCGTCGTCGGA TGTCTGACCCTCGGACTGGCCTACAGCATGGCCAAGGAGTACCTGTTCGA CAAGGCGCCCAAGGAAAACACAAAGTCATTGACTAACTAAAGACCATCTG ATTGCTCGGCGTCCCTCTCTAAAAATCACAAGATGACATCGGCTAGATCA CTTACACATAAGCAATCAGACCCTCTATTTATTGCATCATCATGGTTCAT ACCGATCCACTTGGATAGAATCACTGGAGGGCAGGACTCTCGCAAGTATT CCCGAGCGTTCAAGCCCACAACATTAGATACAGTTTTGTAAACCTGCGTA AGATTGTGATATTGTGTGTTTTAATGTACAAGTTGAACATCCAAACGAAA GCTGTCGAAGCAGACGACAAGATGATAAATACCTCTCGCATGATATGATA TACTTAAATAAATCAATTTAGACTAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17734-RA | 992 | CG17734-RA | 217..948 | 1..732 | 3660 | 100 | Plus |
CG17734-RB | 1185 | CG17734-RB | 150..517 | 1..368 | 1840 | 100 | Plus |
CG17734-RB | 1185 | CG17734-RB | 778..1141 | 369..732 | 1820 | 100 | Plus |
CG11825.a | 663 | CG11825.a | 111..384 | 82..355 | 710 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7067777..7068137 | 729..369 | 1805 | 100 | Minus |
chr3R | 27901430 | chr3R | 7068401..7068588 | 365..178 | 940 | 100 | Minus |
chr3R | 27901430 | chr3R | 7069354..7069533 | 180..1 | 855 | 98.3 | Minus |
chr2R | 21145070 | chr2R | 6308193..6308466 | 355..82 | 710 | 83.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11242200..11242563 | 732..369 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 11242824..11243014 | 368..178 | 955 | 100 | Minus |
3R | 32079331 | 3R | 11243780..11243959 | 180..1 | 900 | 100 | Minus |
2R | 25286936 | 2R | 10420733..10421006 | 355..82 | 710 | 83.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10983031..10983394 | 732..369 | 1820 | 100 | Minus |
3R | 31820162 | 3R | 10983655..10983845 | 368..178 | 955 | 100 | Minus |
3R | 31820162 | 3R | 10984611..10984790 | 180..1 | 900 | 100 | Minus |
2R | 25260384 | 2R | 10421932..10422205 | 355..82 | 710 | 83.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7067777..7068137 | 369..729 | 100 | <- | Minus |
chr3R | 7068398..7068587 | 179..368 | 99 | <- | Minus |
chr3R | 7069356..7069533 | 1..178 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 1..306 | 85..390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 1..306 | 85..390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 1..306 | 85..390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 1..306 | 85..390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 1..306 | 85..390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 18..746 | 1..729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 20..743 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 41..764 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 18..746 | 1..729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17734-RA | 41..764 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11242203..11242563 | 369..729 | 100 | <- | Minus |
3R | 11242824..11243013 | 179..368 | 100 | <- | Minus |
3R | 11243782..11243959 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11242203..11242563 | 369..729 | 100 | <- | Minus |
3R | 11242824..11243013 | 179..368 | 100 | <- | Minus |
3R | 11243782..11243959 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11242203..11242563 | 369..729 | 100 | <- | Minus |
3R | 11242824..11243013 | 179..368 | 100 | <- | Minus |
3R | 11243782..11243959 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7067925..7068285 | 369..729 | 100 | <- | Minus |
arm_3R | 7068546..7068735 | 179..368 | 100 | <- | Minus |
arm_3R | 7069504..7069681 | 1..178 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10983034..10983394 | 369..729 | 100 | <- | Minus |
3R | 10983655..10983844 | 179..368 | 100 | <- | Minus |
3R | 10984613..10984790 | 1..178 | 100 | Minus |
Translation from 0 to 389
> RE71331.hyp VHCRKFRERCQAIKPIRTARVHNIIFVKMSSKSLFDSEEDAAQANKLSRK AKESPFMLVGITGFVAAGLIGAYKYRNRGTMSTSVFLMQLRVAAQGTVVG CLTLGLAYSMAKEYLFDKAPKENTKSLTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17734-PA | 101 | CG17734-PA | 1..101 | 29..129 | 500 | 100 | Plus |
CG17734-PB | 95 | CG17734-PB | 1..94 | 29..122 | 465 | 100 | Plus |
CG11825-PC | 136 | CG11825-PC | 17..133 | 8..125 | 421 | 73.7 | Plus |
CG11825-PA | 100 | CG11825-PA | 1..97 | 29..125 | 411 | 83.5 | Plus |
CG11825-PD | 72 | CG11825-PD | 1..69 | 57..125 | 299 | 85.5 | Plus |
Translation from 84 to 389
> RE71331.pep MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGITGFVAAGLIGAYKYRNR GTMSTSVFLMQLRVAAQGTVVGCLTLGLAYSMAKEYLFDKAPKENTKSLT N*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18164-PA | 101 | GF18164-PA | 1..101 | 1..101 | 477 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17229-PA | 101 | GG17229-PA | 1..101 | 1..101 | 517 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18805-PA | 101 | GH18805-PA | 1..101 | 1..101 | 474 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17734-PA | 101 | CG17734-PA | 1..101 | 1..101 | 500 | 100 | Plus |
CG17734-PB | 95 | CG17734-PB | 1..94 | 1..94 | 465 | 100 | Plus |
CG11825-PA | 100 | CG11825-PA | 1..97 | 1..97 | 411 | 83.5 | Plus |
CG11825-PC | 136 | CG11825-PC | 37..133 | 1..97 | 411 | 83.5 | Plus |
CG11825-PD | 72 | CG11825-PD | 1..69 | 29..97 | 299 | 85.5 | Plus |
CG17734-PC | 106 | CG17734-PC | 1..32 | 1..32 | 154 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10064-PA | 95 | GI10064-PA | 1..94 | 1..94 | 429 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12612-PA | 100 | GL12612-PA | 1..100 | 1..101 | 445 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14631-PA | 100 | GA14631-PA | 1..100 | 1..101 | 445 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26107-PA | 101 | GM26107-PA | 1..101 | 1..101 | 510 | 97 | Plus |
Dsec\GM20525-PA | 100 | GM20525-PA | 1..97 | 1..97 | 441 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20668-PA | 101 | GD20668-PA | 1..101 | 1..101 | 515 | 98 | Plus |
Dsim\GD10739-PA | 100 | GD10739-PA | 1..97 | 1..97 | 432 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23799-PA | 101 | GJ23799-PA | 1..101 | 1..101 | 467 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13290-PA | 102 | GK13290-PA | 3..102 | 2..101 | 463 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24630-PA | 101 | GE24630-PA | 1..101 | 1..101 | 513 | 98 | Plus |