Clone RE71708 Report

Search the DGRC for RE71708

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:717
Well:8
Vector:pFlc-1
Associated Gene/TranscriptSpase22-23-RA
Protein status:RE71708.pep: gold
Preliminary Size:696
Sequenced Size:1711

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5677 2001-12-13 Blastp of sequenced clone
CG5677 2002-01-01 Sim4 clustering to Release 2
CG5677 2003-01-01 Sim4 clustering to Release 3
Spase22-23 2008-04-29 Release 5.5 accounting
Spase22-23 2008-08-15 Release 5.9 accounting
Spase22-23 2008-12-18 5.12 accounting

Clone Sequence Records

RE71708.complete Sequence

1711 bp (1711 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070615

> RE71708.complete
TGGGCTCTAATTTTTTTCCAAACAAACAACACGACGTGTCATTTGCCGGA
ATCGCAGGAATAAAACGATATTAAAATGCACACGGTGTTAACCCGAGGAA
ACGCCACGGTGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGC
TGCTTCCTGTCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAA
CACGGTCAGAGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGG
AGAAGCACGACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACA
GGCATCTTCAACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGA
GTACCAGACACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGA
TTATCCTGCGCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACC
AAGTACTACTTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGT
ATCGCTATACCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCT
CCGTTCAGGCCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCC
ACCTCGTCCATTTAGAGCTTAGGGCTAATGCTAAATACAGCTGGTTCCGC
CCGGGTTCCCTAGCTTGTAGTGTCTATCTAATAAAACCCCAAATAAAATA
TCTTTGTAAAGATTTCGAACTGTATCCCAAACGAAAGAAACTTAAGAGAA
ATTCGTTGAAAATAATTTATTTTTGGTCCATTTTTATAATGACAATTTTA
TCTATAGCTTTCTATAGTAATTAACCAGCGAGTGACTGCAGAGCGCCAGC
ACTTAGTTTTCGGTCTTTCGTCTCAAATCTGGGTTTGGCAGTCGAACTAG
GGTTCAACACTGCAGCTGAGGTGTTAAGGGATAGAGCTACAACCAAAATA
GCAATAAAGAACTGTGCGAAAATTTTAAAAAATATTAGATTTTGGAACGC
AGATATGATTAGTACCAACACACCAATTTTACTGAGGCCATGTTGATATC
CGCTAAAGAAATCGAAAACTATACTAAAAATGTGTAAAAGATCTCCAATA
TATATATGACTGGTATTCAAGGCCGCATCGAATGGGTTCGTTTCAAAATT
TAAAACTGAATCAAATTCGTTAACATTTTTTACAAGGCTTACGCAATGAA
AAAGACTAATTGACCTTTGAAAATGTAATCCTTAAGACGAAGATGATGAA
CCCAACATATGAAAATACTTATTCGATCAATTCACAACTAATACGAAAAG
GAAAGGATTTTGCATTCGGAAGATTATTTTTATTTCAAACTTCCTAAATA
GAAGCATTCATTAGATTACTTATTTTACAGTCGGGGTTTTTTTTTTAATG
TCTATTAATGCTGCAGCATCTGACATGCGATAACACAGTTGTCCTTGACC
TAGTTGTAGAACATAAACATAATAGATGCACATCAAAAATGTTTATTTAT
AAGATCGGTTAAGTTTTAATATGGCAACGTATGACAGACATTCGTAATAC
AAACTTGCGTAAATGCATTCAGGAGTTCGCAGTTTTATGATTATTTATCT
GATTACATATTTTAGCCTTGGTATGTTTTCCCACTGGGGACGTGCGAGCG
TATCTTGTTTAAATATTCTTTGGTCTATATTTATAATAATTAAGCAAAAA
AAAAAAAAAAA

RE71708.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Spase22-23-RA 724 Spase22-23-RA 1..724 4..727 3605 99.8 Plus
CG13609-RA 1753 CG13609-RA 1539..1753 1709..1495 1060 99.5 Minus
Acp95EF-RA 369 Acp95EF-RA 161..369 962..754 1045 100 Minus
Acp95EF-RA 369 Acp95EF-RA 1..161 1184..1024 805 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20051697..20053385 1693..4 8235 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24228324..24230029 1709..4 8500 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23969155..23970860 1709..4 8500 99.8 Minus
Blast to na_te.dros performed 2019-03-15 14:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 1713..1928 1284..1501 123 54.3 Plus
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 3746..3993 922..1160 121 57.2 Plus
transib3 2883 transib3 TRANSIB3 2883bp 1794..1893 1626..1527 113 59.8 Minus

RE71708.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:30:43 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20051718..20053385 1..1672 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:40 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..540 76..615 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:54 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RB 1..540 76..615 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:31:37 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..540 76..615 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:02 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..540 76..615 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:00:39 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..540 76..615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:56 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..1692 4..1695 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:54 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RB 2..1689 4..1691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:31:37 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RB 4..1694 1..1691 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:03 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RA 1..1692 4..1695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:00:39 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
Spase22-23-RB 4..1694 1..1691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:43 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24228338..24230029 1..1695 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:43 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24228338..24230029 1..1695 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:43 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24228338..24230029 1..1695 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:31:37 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20054060..20055751 1..1695 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:01 Download gff for RE71708.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23969169..23970860 1..1695 99   Minus

RE71708.pep Sequence

Translation from 75 to 614

> RE71708.pep
MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN
VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL
NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI
IPNAGLLPSVQATGKHLFKFPADYATSSI*

RE71708.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18886-PA 179 GF18886-PA 1..179 1..179 921 96.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12361-PA 179 GG12361-PA 1..179 1..179 931 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18918-PA 178 GH18918-PA 1..177 1..177 822 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spase22-23-PB 179 CG5677-PB 1..179 1..179 947 100 Plus
Spase22-23-PA 179 CG5677-PA 1..179 1..179 947 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23418-PA 178 GI23418-PA 1..177 1..177 844 88.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24131-PA 179 GL24131-PA 1..179 1..179 891 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19051-PA 179 GA19051-PA 1..179 1..179 891 91.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23500-PA 179 GM23500-PA 1..179 1..179 928 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18308-PA 179 GD18308-PA 1..179 1..179 928 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10623-PA 178 GJ10623-PA 1..177 1..177 869 90.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11711-PA 179 GK11711-PA 1..179 1..179 887 91.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10815-PA 179 GE10815-PA 1..179 1..179 929 97.8 Plus

RE71708.hyp Sequence

Translation from 75 to 614

> RE71708.hyp
MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN
VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL
NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI
IPNAGLLPSVQATGKHLFKFPADYATSSI*

RE71708.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Spase22-23-PB 179 CG5677-PB 1..179 1..179 947 100 Plus
Spase22-23-PA 179 CG5677-PA 1..179 1..179 947 100 Plus