BDGP Sequence Production Resources |
Search the DGRC for RE71708
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 717 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spase22-23-RA |
Protein status: | RE71708.pep: gold |
Preliminary Size: | 696 |
Sequenced Size: | 1711 |
Gene | Date | Evidence |
---|---|---|
CG5677 | 2001-12-13 | Blastp of sequenced clone |
CG5677 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5677 | 2003-01-01 | Sim4 clustering to Release 3 |
Spase22-23 | 2008-04-29 | Release 5.5 accounting |
Spase22-23 | 2008-08-15 | Release 5.9 accounting |
Spase22-23 | 2008-12-18 | 5.12 accounting |
1711 bp (1711 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070615
> RE71708.complete TGGGCTCTAATTTTTTTCCAAACAAACAACACGACGTGTCATTTGCCGGA ATCGCAGGAATAAAACGATATTAAAATGCACACGGTGTTAACCCGAGGAA ACGCCACGGTGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGC TGCTTCCTGTCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAA CACGGTCAGAGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGG AGAAGCACGACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACA GGCATCTTCAACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGA GTACCAGACACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGA TTATCCTGCGCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACC AAGTACTACTTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGT ATCGCTATACCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCT CCGTTCAGGCCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCC ACCTCGTCCATTTAGAGCTTAGGGCTAATGCTAAATACAGCTGGTTCCGC CCGGGTTCCCTAGCTTGTAGTGTCTATCTAATAAAACCCCAAATAAAATA TCTTTGTAAAGATTTCGAACTGTATCCCAAACGAAAGAAACTTAAGAGAA ATTCGTTGAAAATAATTTATTTTTGGTCCATTTTTATAATGACAATTTTA TCTATAGCTTTCTATAGTAATTAACCAGCGAGTGACTGCAGAGCGCCAGC ACTTAGTTTTCGGTCTTTCGTCTCAAATCTGGGTTTGGCAGTCGAACTAG GGTTCAACACTGCAGCTGAGGTGTTAAGGGATAGAGCTACAACCAAAATA GCAATAAAGAACTGTGCGAAAATTTTAAAAAATATTAGATTTTGGAACGC AGATATGATTAGTACCAACACACCAATTTTACTGAGGCCATGTTGATATC CGCTAAAGAAATCGAAAACTATACTAAAAATGTGTAAAAGATCTCCAATA TATATATGACTGGTATTCAAGGCCGCATCGAATGGGTTCGTTTCAAAATT TAAAACTGAATCAAATTCGTTAACATTTTTTACAAGGCTTACGCAATGAA AAAGACTAATTGACCTTTGAAAATGTAATCCTTAAGACGAAGATGATGAA CCCAACATATGAAAATACTTATTCGATCAATTCACAACTAATACGAAAAG GAAAGGATTTTGCATTCGGAAGATTATTTTTATTTCAAACTTCCTAAATA GAAGCATTCATTAGATTACTTATTTTACAGTCGGGGTTTTTTTTTTAATG TCTATTAATGCTGCAGCATCTGACATGCGATAACACAGTTGTCCTTGACC TAGTTGTAGAACATAAACATAATAGATGCACATCAAAAATGTTTATTTAT AAGATCGGTTAAGTTTTAATATGGCAACGTATGACAGACATTCGTAATAC AAACTTGCGTAAATGCATTCAGGAGTTCGCAGTTTTATGATTATTTATCT GATTACATATTTTAGCCTTGGTATGTTTTCCCACTGGGGACGTGCGAGCG TATCTTGTTTAAATATTCTTTGGTCTATATTTATAATAATTAAGCAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spase22-23-RA | 724 | Spase22-23-RA | 1..724 | 4..727 | 3605 | 99.8 | Plus |
CG13609-RA | 1753 | CG13609-RA | 1539..1753 | 1709..1495 | 1060 | 99.5 | Minus |
Acp95EF-RA | 369 | Acp95EF-RA | 161..369 | 962..754 | 1045 | 100 | Minus |
Acp95EF-RA | 369 | Acp95EF-RA | 1..161 | 1184..1024 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20051697..20053385 | 1693..4 | 8235 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24228324..24230029 | 1709..4 | 8500 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23969155..23970860 | 1709..4 | 8500 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 1713..1928 | 1284..1501 | 123 | 54.3 | Plus |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 3746..3993 | 922..1160 | 121 | 57.2 | Plus |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 1794..1893 | 1626..1527 | 113 | 59.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20051718..20053385 | 1..1672 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..540 | 76..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RB | 1..540 | 76..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..540 | 76..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..540 | 76..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..540 | 76..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..1692 | 4..1695 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RB | 2..1689 | 4..1691 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RB | 4..1694 | 1..1691 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RA | 1..1692 | 4..1695 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spase22-23-RB | 4..1694 | 1..1691 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24228338..24230029 | 1..1695 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24228338..24230029 | 1..1695 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24228338..24230029 | 1..1695 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20054060..20055751 | 1..1695 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23969169..23970860 | 1..1695 | 99 | Minus |
Translation from 75 to 614
> RE71708.pep MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI IPNAGLLPSVQATGKHLFKFPADYATSSI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18886-PA | 179 | GF18886-PA | 1..179 | 1..179 | 921 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12361-PA | 179 | GG12361-PA | 1..179 | 1..179 | 931 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18918-PA | 178 | GH18918-PA | 1..177 | 1..177 | 822 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spase22-23-PB | 179 | CG5677-PB | 1..179 | 1..179 | 947 | 100 | Plus |
Spase22-23-PA | 179 | CG5677-PA | 1..179 | 1..179 | 947 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23418-PA | 178 | GI23418-PA | 1..177 | 1..177 | 844 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24131-PA | 179 | GL24131-PA | 1..179 | 1..179 | 891 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19051-PA | 179 | GA19051-PA | 1..179 | 1..179 | 891 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23500-PA | 179 | GM23500-PA | 1..179 | 1..179 | 928 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18308-PA | 179 | GD18308-PA | 1..179 | 1..179 | 928 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10623-PA | 178 | GJ10623-PA | 1..177 | 1..177 | 869 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11711-PA | 179 | GK11711-PA | 1..179 | 1..179 | 887 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10815-PA | 179 | GE10815-PA | 1..179 | 1..179 | 929 | 97.8 | Plus |
Translation from 75 to 614
> RE71708.hyp MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI IPNAGLLPSVQATGKHLFKFPADYATSSI*