BDGP Sequence Production Resources |
Search the DGRC for RE71749
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 717 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Zwilch-RA |
Protein status: | RE71749.pep: gold |
Sequenced Size: | 2197 |
Gene | Date | Evidence |
---|---|---|
CG18729 | 2007-10-31 | Manual selection by Ken Wan |
zwilch | 2008-04-29 | Picked prior to 5.5 |
zwilch | 2008-12-18 | 5.12 accounting |
2197 bp assembled on 2008-11-07
GenBank Submission: BT044598.1
> RE71749.complete ACTGCCGCTTTTTGTTTCTGTTTTGCGAATTTGCTCCAAAAATGTCGGCT TCTGCGAACTTGGCAAACGTTTACGCGGAGCTAATGCGGCGGTGTGGCGA GTCATACACGATCACCTATGGAGCGCCACCCACCTACTTGGTGAGCATGG TGGGGGCTGCGGAAGCTGGCAAGAAGATTGTGCTGGTCTTTAAGGAGGAT CGCAATGGAGCAGTGGCGAGACTCCGGACCACGCCCACCAGGGCAGCCCC AAAAAAAGAGGGCTCTGCGGACTTGGATCTGACGGGAAGTCCTTTGAAGG ACGACTGCCTGGTGGACGCCATAGCCGACTTGTCCATCGACCTGCAGCTG GATCACTCGAATCCCTGGAAGCTGGAGGAGGAATATCAACGCGGAATACC CGTGGACAAGGCTAGGTCCATCGTGTGCTCCGAGTTCCTGCAGCTGGCCG AGGGACTCGGATCCGTGTGGTTTTTGTGCGACGGCAGTGATCTCGGGCAG ACTCAGTTGCTCCAGTACGAGTTCAACCCTACGCACTTCTCCAGGGGAAT ACTTAGCTACCAGGGTGTGCGCCCTGCTTACTTAGTAACCTCGCAAGCCC TGGTGCGCCATCATGGCAAGACACCGGATGAAACTCTCATTGAAAATAGC TACCAGGTCAATCCCCACATGAGACTACGCTGCTCCTGGACCTCTAGTGC TGCACTTCCGCTCCTGGTGAACCTGAACGACTGCGATGTGGCTTTGAATC ACACTTTTCGCGTGGGCGACTGCGGTCCTTTGACGCAGGACTTTATGAAT CAGCTGCGCATTCTGGTCTACATACGCGAGGACATCGTCTCCTACCACAC GGATGTCAAGCAGGGCGTCTCTCGGGATCCCACCTATCGTTGTGGCAGTG GCATTGACATGGACGAGCTGCGCGAGTCCATTAATCAGACAATGACAGAT GTCTCTGGCCTTATAGGTCGGTATAGCATCAGCAATGCGGAGTTTGACAT CGAAGATGTGGTGCAGAGGGCCAAGGTTCGCCAGCTCACGGATCTAACCG ATAAGCTTTGGGAGCTGCTCAAGTGCTGCCACTCCTACAAGGATCTCAAA ATTGCCTTTAGTATGCTCTTCCAATGTGCTGCACGGTGTAACATAGTAAA CACGCCTACTAACAAAAATCGACTTGCCAAGATTATCACCGAGTTGGCCA ACCGTCGTCTGGCCATGCCTTGTTTAAGTGGGGCCGAGCCTCTGGAACTG CTTTTGGAAATTGGCCTGGAGAAGTTGTACAAGGACTACGAGTTTATCTA CACCGAGAGCAAGATGTGCAGCACCAATCTGTTGAAGGATGACTCCAGCG GAGCGTCGATGGACGATGGTTCTCCCCAGAATCTGCCCCAGCTTCGAAAA TCCCTGCACAATGCGGTCAGGGGTGATCCGACCCCTGGAGCTGGAATGCG AAAGACGCTGCTGCATCATCACGGCGCTGTCAATTCGCGGAGTACAAAAT ATGCCGGTAGCGACGATGATGCTGGGTTCAAAAACAGCCATTTCGACGAG CACGAGAGTACGGAGAGAATCTCAAAGTTGTTTCAGATTCACTGCACCTT AGAGCATCTCCTGATGATGCACATCCACTTAAATCTGGCAAATGTTTACA ACGATGTCTGTTCTGAATTGCTGAAGAAACCGCCTAAATTAGTAGAATCC ATCGATGATCAGCTAAGTGATGTTATGGACATTCGCCTGTCTGCCCACTA TGTGAGGGATCACTTGGATGGCAAGGATCCCTACTCCCGGCACATTACCA TGCGTTCGCACAACAAGTTCCGCGAACTAAAGACCACCTTCTATTTCAAT TCGGAAAACATTTGTCCGCCGAACTTGGCTCAGTGTTTCCAGTGTGATGA CAAGGAGATGGTCAAGGAGCGCACATATCATTCCTGGATATATCACAAGA TTCGCTCACTTAAGTAAGGCTTGCTTAGTAATACAAAATTGTACATTCTT TAAATTTAAGCATGGCTAAGAATGGTTTAAAATGGCCTTTTTCACATTGT AATAATTTATTTAATGGATATCTAGCAAGAATGTCCCTTAGCTGCATAAT GTTTTGAGACACATTTAAAATGTTGAATTTTTTCAAACACTGCTTGTTGT ATTATTAAATTAAATGCCTTTTGGTTATAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
zwilch-RA | 2244 | zwilch-RA | 56..2235 | 1..2180 | 10900 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27034572..27035719 | 1148..1 | 5740 | 100 | Minus |
chr3R | 27901430 | chr3R | 27034019..27034514 | 1644..1149 | 2465 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 27033361..27033642 | 2180..1899 | 1410 | 100 | Minus |
chr3R | 27901430 | chr3R | 27033703..27033958 | 1899..1644 | 1280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31212183..31213330 | 1148..1 | 5740 | 100 | Minus |
3R | 32079331 | 3R | 31211630..31212125 | 1644..1149 | 2480 | 100 | Minus |
3R | 32079331 | 3R | 31210972..31211253 | 2180..1899 | 1410 | 100 | Minus |
3R | 32079331 | 3R | 31211314..31211569 | 1899..1644 | 1280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30953014..30954161 | 1148..1 | 5740 | 100 | Minus |
3R | 31820162 | 3R | 30952461..30952956 | 1644..1149 | 2480 | 100 | Minus |
3R | 31820162 | 3R | 30951803..30952084 | 2180..1899 | 1410 | 100 | Minus |
3R | 31820162 | 3R | 30952145..30952400 | 1899..1644 | 1280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1831..1881 | 529..579 | 120 | 70.6 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 1519..1570 | 1501..1449 | 118 | 71.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27033360..27033641 | 1900..2181 | 99 | <- | Minus |
chr3R | 27033703..27033957 | 1645..1899 | 100 | <- | Minus |
chr3R | 27034019..27034514 | 1149..1644 | 99 | <- | Minus |
chr3R | 27034572..27035719 | 1..1148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 1..1926 | 42..1967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 1..1926 | 42..1967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 1..1926 | 42..1967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zwilch-RA | 1..1926 | 42..1967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 21..2200 | 1..2181 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 21..2200 | 1..2181 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 47..2226 | 1..2181 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zwilch-RA | 21..2200 | 1..2181 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zwilch-RA | 47..2226 | 1..2181 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31210971..31211252 | 1900..2181 | 99 | <- | Minus |
3R | 31211314..31211568 | 1645..1899 | 100 | <- | Minus |
3R | 31211630..31212125 | 1149..1644 | 100 | <- | Minus |
3R | 31212183..31213330 | 1..1148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31210971..31211252 | 1900..2181 | 99 | <- | Minus |
3R | 31211314..31211568 | 1645..1899 | 100 | <- | Minus |
3R | 31211630..31212125 | 1149..1644 | 100 | <- | Minus |
3R | 31212183..31213330 | 1..1148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31210971..31211252 | 1900..2181 | 99 | <- | Minus |
3R | 31211314..31211568 | 1645..1899 | 100 | <- | Minus |
3R | 31211630..31212125 | 1149..1644 | 100 | <- | Minus |
3R | 31212183..31213330 | 1..1148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27036693..27036974 | 1900..2181 | 99 | <- | Minus |
arm_3R | 27037036..27037290 | 1645..1899 | 100 | <- | Minus |
arm_3R | 27037352..27037847 | 1149..1644 | 100 | <- | Minus |
arm_3R | 27037905..27039052 | 1..1148 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30951802..30952083 | 1900..2181 | 99 | <- | Minus |
3R | 30952145..30952399 | 1645..1899 | 100 | <- | Minus |
3R | 30952461..30952956 | 1149..1644 | 100 | <- | Minus |
3R | 30953014..30954161 | 1..1148 | 100 | Minus |
Translation from 2 to 1966
> RE71749.hyp CRFLFLFCEFAPKMSASANLANVYAELMRRCGESYTITYGAPPTYLVSMV GAAEAGKKIVLVFKEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKD DCLVDAIADLSIDLQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAE GLGSVWFLCDGSDLGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQAL VRHHGKTPDETLIENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNH TFRVGDCGPLTQDFMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSG IDMDELRESINQTMTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTD KLWELLKCCHSYKDLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELAN RRLAMPCLSGAEPLELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSG ASMDDGSPQNLPQLRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKY AGSDDDAGFKNSHFDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYN DVCSELLKKPPKLVESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITM RSHNKFRELKTTFYFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKI RSLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zwilch-PA | 641 | CG18729-PA | 1..641 | 14..654 | 3382 | 100 | Plus |
Translation from 2 to 1966
> RE71749.pep CRFLFLFCEFAPKMSASANLANVYAELMRRCGESYTITYGAPPTYLVSMV GAAEAGKKIVLVFKEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKD DCLVDAIADLSIDLQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAE GLGSVWFLCDGSDLGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQAL VRHHGKTPDETLIENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNH TFRVGDCGPLTQDFMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSG IDMDELRESINQTMTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTD KLWELLKCCHSYKDLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELAN RRLAMPCLSGAEPLELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSG ASMDDGSPQNLPQLRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKY AGSDDDAGFKNSHFDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYN DVCSELLKKPPKLVESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITM RSHNKFRELKTTFYFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKI RSLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16592-PA | 643 | GF16592-PA | 2..643 | 17..654 | 2655 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11881-PA | 641 | GG11881-PA | 1..641 | 14..654 | 3103 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14338-PA | 644 | GH14338-PA | 2..644 | 17..654 | 2258 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zwilch-PA | 641 | CG18729-PA | 1..641 | 14..654 | 3382 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10433-PA | 648 | GI10433-PA | 3..648 | 18..654 | 2219 | 66.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13951-PA | 638 | GL13951-PA | 2..638 | 17..654 | 2629 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15054-PA | 638 | GA15054-PA | 2..638 | 17..654 | 2632 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12099-PA | 641 | GM12099-PA | 1..641 | 14..654 | 3389 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16546-PA | 641 | GD16546-PA | 1..641 | 14..654 | 3385 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10648-PA | 644 | GJ10648-PA | 2..644 | 17..654 | 2314 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22553-PA | 642 | GK22553-PA | 2..634 | 17..647 | 2171 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23329-PA | 641 | GE23329-PA | 1..641 | 14..654 | 3216 | 94.9 | Plus |