Clone RE71749 Report

Search the DGRC for RE71749

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:717
Well:49
Vector:pFlc-1
Associated Gene/TranscriptZwilch-RA
Protein status:RE71749.pep: gold
Sequenced Size:2197

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18729 2007-10-31 Manual selection by Ken Wan
zwilch 2008-04-29 Picked prior to 5.5
zwilch 2008-12-18 5.12 accounting

Clone Sequence Records

RE71749.complete Sequence

2197 bp assembled on 2008-11-07

GenBank Submission: BT044598.1

> RE71749.complete
ACTGCCGCTTTTTGTTTCTGTTTTGCGAATTTGCTCCAAAAATGTCGGCT
TCTGCGAACTTGGCAAACGTTTACGCGGAGCTAATGCGGCGGTGTGGCGA
GTCATACACGATCACCTATGGAGCGCCACCCACCTACTTGGTGAGCATGG
TGGGGGCTGCGGAAGCTGGCAAGAAGATTGTGCTGGTCTTTAAGGAGGAT
CGCAATGGAGCAGTGGCGAGACTCCGGACCACGCCCACCAGGGCAGCCCC
AAAAAAAGAGGGCTCTGCGGACTTGGATCTGACGGGAAGTCCTTTGAAGG
ACGACTGCCTGGTGGACGCCATAGCCGACTTGTCCATCGACCTGCAGCTG
GATCACTCGAATCCCTGGAAGCTGGAGGAGGAATATCAACGCGGAATACC
CGTGGACAAGGCTAGGTCCATCGTGTGCTCCGAGTTCCTGCAGCTGGCCG
AGGGACTCGGATCCGTGTGGTTTTTGTGCGACGGCAGTGATCTCGGGCAG
ACTCAGTTGCTCCAGTACGAGTTCAACCCTACGCACTTCTCCAGGGGAAT
ACTTAGCTACCAGGGTGTGCGCCCTGCTTACTTAGTAACCTCGCAAGCCC
TGGTGCGCCATCATGGCAAGACACCGGATGAAACTCTCATTGAAAATAGC
TACCAGGTCAATCCCCACATGAGACTACGCTGCTCCTGGACCTCTAGTGC
TGCACTTCCGCTCCTGGTGAACCTGAACGACTGCGATGTGGCTTTGAATC
ACACTTTTCGCGTGGGCGACTGCGGTCCTTTGACGCAGGACTTTATGAAT
CAGCTGCGCATTCTGGTCTACATACGCGAGGACATCGTCTCCTACCACAC
GGATGTCAAGCAGGGCGTCTCTCGGGATCCCACCTATCGTTGTGGCAGTG
GCATTGACATGGACGAGCTGCGCGAGTCCATTAATCAGACAATGACAGAT
GTCTCTGGCCTTATAGGTCGGTATAGCATCAGCAATGCGGAGTTTGACAT
CGAAGATGTGGTGCAGAGGGCCAAGGTTCGCCAGCTCACGGATCTAACCG
ATAAGCTTTGGGAGCTGCTCAAGTGCTGCCACTCCTACAAGGATCTCAAA
ATTGCCTTTAGTATGCTCTTCCAATGTGCTGCACGGTGTAACATAGTAAA
CACGCCTACTAACAAAAATCGACTTGCCAAGATTATCACCGAGTTGGCCA
ACCGTCGTCTGGCCATGCCTTGTTTAAGTGGGGCCGAGCCTCTGGAACTG
CTTTTGGAAATTGGCCTGGAGAAGTTGTACAAGGACTACGAGTTTATCTA
CACCGAGAGCAAGATGTGCAGCACCAATCTGTTGAAGGATGACTCCAGCG
GAGCGTCGATGGACGATGGTTCTCCCCAGAATCTGCCCCAGCTTCGAAAA
TCCCTGCACAATGCGGTCAGGGGTGATCCGACCCCTGGAGCTGGAATGCG
AAAGACGCTGCTGCATCATCACGGCGCTGTCAATTCGCGGAGTACAAAAT
ATGCCGGTAGCGACGATGATGCTGGGTTCAAAAACAGCCATTTCGACGAG
CACGAGAGTACGGAGAGAATCTCAAAGTTGTTTCAGATTCACTGCACCTT
AGAGCATCTCCTGATGATGCACATCCACTTAAATCTGGCAAATGTTTACA
ACGATGTCTGTTCTGAATTGCTGAAGAAACCGCCTAAATTAGTAGAATCC
ATCGATGATCAGCTAAGTGATGTTATGGACATTCGCCTGTCTGCCCACTA
TGTGAGGGATCACTTGGATGGCAAGGATCCCTACTCCCGGCACATTACCA
TGCGTTCGCACAACAAGTTCCGCGAACTAAAGACCACCTTCTATTTCAAT
TCGGAAAACATTTGTCCGCCGAACTTGGCTCAGTGTTTCCAGTGTGATGA
CAAGGAGATGGTCAAGGAGCGCACATATCATTCCTGGATATATCACAAGA
TTCGCTCACTTAAGTAAGGCTTGCTTAGTAATACAAAATTGTACATTCTT
TAAATTTAAGCATGGCTAAGAATGGTTTAAAATGGCCTTTTTCACATTGT
AATAATTTATTTAATGGATATCTAGCAAGAATGTCCCTTAGCTGCATAAT
GTTTTGAGACACATTTAAAATGTTGAATTTTTTCAAACACTGCTTGTTGT
ATTATTAAATTAAATGCCTTTTGGTTATAAGAAAAAAAAAAAAAAAA

RE71749.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
zwilch-RA 2244 zwilch-RA 56..2235 1..2180 10900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27034572..27035719 1148..1 5740 100 Minus
chr3R 27901430 chr3R 27034019..27034514 1644..1149 2465 99.8 Minus
chr3R 27901430 chr3R 27033361..27033642 2180..1899 1410 100 Minus
chr3R 27901430 chr3R 27033703..27033958 1899..1644 1280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31212183..31213330 1148..1 5740 100 Minus
3R 32079331 3R 31211630..31212125 1644..1149 2480 100 Minus
3R 32079331 3R 31210972..31211253 2180..1899 1410 100 Minus
3R 32079331 3R 31211314..31211569 1899..1644 1280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30953014..30954161 1148..1 5740 100 Minus
3R 31820162 3R 30952461..30952956 1644..1149 2480 100 Minus
3R 31820162 3R 30951803..30952084 2180..1899 1410 100 Minus
3R 31820162 3R 30952145..30952400 1899..1644 1280 100 Minus
Blast to na_te.dros performed 2019-03-15 15:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 1831..1881 529..579 120 70.6 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 1519..1570 1501..1449 118 71.7 Minus

RE71749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:03:29 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27033360..27033641 1900..2181 99 <- Minus
chr3R 27033703..27033957 1645..1899 100 <- Minus
chr3R 27034019..27034514 1149..1644 99 <- Minus
chr3R 27034572..27035719 1..1148 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:41 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 1..1926 42..1967 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:19:46 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 1..1926 42..1967 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:59:57 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 1..1926 42..1967 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:23 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
Zwilch-RA 1..1926 42..1967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 08:00:41 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 21..2200 1..2181 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:19:46 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 21..2200 1..2181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:59:57 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 47..2226 1..2181 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-07 10:24:37 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
zwilch-RA 21..2200 1..2181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:23 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
Zwilch-RA 47..2226 1..2181 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:29 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31210971..31211252 1900..2181 99 <- Minus
3R 31211314..31211568 1645..1899 100 <- Minus
3R 31211630..31212125 1149..1644 100 <- Minus
3R 31212183..31213330 1..1148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:29 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31210971..31211252 1900..2181 99 <- Minus
3R 31211314..31211568 1645..1899 100 <- Minus
3R 31211630..31212125 1149..1644 100 <- Minus
3R 31212183..31213330 1..1148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:29 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31210971..31211252 1900..2181 99 <- Minus
3R 31211314..31211568 1645..1899 100 <- Minus
3R 31211630..31212125 1149..1644 100 <- Minus
3R 31212183..31213330 1..1148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:59:57 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27036693..27036974 1900..2181 99 <- Minus
arm_3R 27037036..27037290 1645..1899 100 <- Minus
arm_3R 27037352..27037847 1149..1644 100 <- Minus
arm_3R 27037905..27039052 1..1148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:06 Download gff for RE71749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30951802..30952083 1900..2181 99 <- Minus
3R 30952145..30952399 1645..1899 100 <- Minus
3R 30952461..30952956 1149..1644 100 <- Minus
3R 30953014..30954161 1..1148 100   Minus

RE71749.hyp Sequence

Translation from 2 to 1966

> RE71749.hyp
CRFLFLFCEFAPKMSASANLANVYAELMRRCGESYTITYGAPPTYLVSMV
GAAEAGKKIVLVFKEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKD
DCLVDAIADLSIDLQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAE
GLGSVWFLCDGSDLGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQAL
VRHHGKTPDETLIENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNH
TFRVGDCGPLTQDFMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSG
IDMDELRESINQTMTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTD
KLWELLKCCHSYKDLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELAN
RRLAMPCLSGAEPLELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSG
ASMDDGSPQNLPQLRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKY
AGSDDDAGFKNSHFDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYN
DVCSELLKKPPKLVESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITM
RSHNKFRELKTTFYFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKI
RSLK*

RE71749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Zwilch-PA 641 CG18729-PA 1..641 14..654 3382 100 Plus

RE71749.pep Sequence

Translation from 2 to 1966

> RE71749.pep
CRFLFLFCEFAPKMSASANLANVYAELMRRCGESYTITYGAPPTYLVSMV
GAAEAGKKIVLVFKEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKD
DCLVDAIADLSIDLQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAE
GLGSVWFLCDGSDLGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQAL
VRHHGKTPDETLIENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNH
TFRVGDCGPLTQDFMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSG
IDMDELRESINQTMTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTD
KLWELLKCCHSYKDLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELAN
RRLAMPCLSGAEPLELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSG
ASMDDGSPQNLPQLRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKY
AGSDDDAGFKNSHFDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYN
DVCSELLKKPPKLVESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITM
RSHNKFRELKTTFYFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKI
RSLK*

RE71749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16592-PA 643 GF16592-PA 2..643 17..654 2655 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11881-PA 641 GG11881-PA 1..641 14..654 3103 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14338-PA 644 GH14338-PA 2..644 17..654 2258 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Zwilch-PA 641 CG18729-PA 1..641 14..654 3382 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10433-PA 648 GI10433-PA 3..648 18..654 2219 66.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13951-PA 638 GL13951-PA 2..638 17..654 2629 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15054-PA 638 GA15054-PA 2..638 17..654 2632 78.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12099-PA 641 GM12099-PA 1..641 14..654 3389 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16546-PA 641 GD16546-PA 1..641 14..654 3385 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10648-PA 644 GJ10648-PA 2..644 17..654 2314 68.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22553-PA 642 GK22553-PA 2..634 17..647 2171 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23329-PA 641 GE23329-PA 1..641 14..654 3216 94.9 Plus