BDGP Sequence Production Resources |
Search the DGRC for RE71821
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 718 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9304-RA |
Protein status: | RE71821.pep: gold |
Sequenced Size: | 2601 |
Gene | Date | Evidence |
---|---|---|
CG9304 | 2007-09-25 | DGC5 pick |
CG9304 | 2008-04-29 | Release 5.5 accounting |
CG9304 | 2008-04-29 | Picked prior to 5.5 |
CG9304 | 2008-08-15 | Release 5.9 accounting |
CG9304 | 2008-12-18 | 5.12 accounting |
2601 bp assembled on 2007-12-05
GenBank Submission: BT031347
> RE71821.complete GACAAATGCATCGATGCCGTTTTGGCATCACTAGCGACTGCGGATTTGTG GTGTGGAAATTTCCGCAAAACAAAAATAAAAATAGACCTCGGTGTGCCAA CTTGCAAGCGATGCACAAAGGGGCGCCTCCTTGGCGAGTGGGCTGTGCCG ACGTGGCATCCGGAATGGAGTGGCAGCTGTCCGGGAATCCCGCATTGGGA GAAGAGGAAGAGGCTGCAAACAAACAACAACAACAACAACTGATAAGAAG TGAAAGGTGGGCCTGCAATCGCAGGACTATTCTCCTGGGATGCATCTGCA TCATTATCTTGATAGCTGTTCCCTCGAGCAATGCCACCCACATCAGCGGA CAATTCCAGACGGGCGACTTCTTTCAGTTCCTGGCGAAATTCGGCTTCAA CAAGGCAGATCTGACACGGCGCAATGCCTATGGATATATCTACGGCAATG TCACGTCGACGGATAAGTATGCGGTTCCTTTGACACTCGTCGTCTTGGAC AGAAGGACTTTCCTCGAGTTCTACGGCAACCGCAGTCAAAGGAGCCGGGA AGCCGCCTGCACAGGGATGTTCTCCCGCCTCCAAAGGATCGCCTACGATT CCACGTGCAATCCTCGTGCCAAAAGGGACTTCCTGCGTCATGTTCCCTGT CCCGTCAATCAGCTCTGCAGCGATGAAGATGAACCCGGAAACGTAGTCCC GGGATCGCAGTTCACCTACGTTATCAACCTGGAGGCGGAACCAAGATTTT GGTACCTCTCCCTGGTGGCCTGTTATCAAAACAAAAGCACCTGCCAGTGG CACGCGCACGAGAGCCTGCCAAGGCTAAGTAAATTGGACAGCAATCTCCT CAACACGCTGCACTACGACATACATCTGGTCAACTTGCATCCGAACAACT CGGCCGCACATCCACTTACCTACCAGTACTCGTACGATCAGCAGAATCTA CTGGAGATGTACCTGGTGTTCCTGCTCGTCTACATTGTTCTGCTGCCCAT GCAAATTTATGCGGTGCGGCGGCAGAAGCATCCAGTGACCAAGTTGTTTA CCGTGAGTCTTCTCAGCGAGTTCGTCAGCCTGGCTCTGATCACCGCTCAC CTGATTCACTATGCGGCCAATGGAGTGGGCGAGCCAAGATTGCAGGCAGC TGGAGATGTCCTGGACATCTTGAGCCGCACCACATTTATGTTAATTCTGC TGCTGCTGGCCAAAGGATGGGCAGTTACCAGACAGCAAATCAGCAGAACG GGATGGATAATTCTGATGTCCATCTGGGTGCCATACTGCGCGTTCCACGT GTTCCTTTACATCTGGGATAGGACGGAAGTCGATGTGGTTTCCGACATCG ATGAATACCAGACGTGGCCCGGCTGGATAGTTTTAATACTACGCACCTCC TTTATGATGTGGTTTCTTTACGAGCTCCGCAACACCATGAAGTACGAGCA CTCAACAAAAAAACTTGACTTTCTACTTCACCTGGGCGCTTCCAGTTTGG TGTGGTTTATCTACTTACCCATCGTGGCAATTGTGGCGCTGCAGGTCAGC CCCATGTGGCGCTACAAGTTGCTGCAAGGTATCACCAACTCGGCGGACTG CATGGCCTATTGTGTGATGACAGGTCTGTTGTGGCCACATAGAGCCGGCC AATATCTGCTCCTAGCGGGCACCAAATATGCGGGCATGGATGAGTTGGAC GAGTTCAATGAAGCGCCACACATTGTCAGGGAGCGTGAGAGGCGTCGGAA TTCGCCGCCCGATGAAATTGCCGTTGGTACGGGGAGTCGGGGGATGGTGC TATCCACTAGCATTCCACATTCGCTAAACGGCGATGCCTGCAACGATCTT TTGGAGGCTGAAGACCTCGACGCGGAGCTGCTCACCGATCTTAACAAAAA CAGTCATATTGTGGCGTAAATGCAACGGGTTAATTACTAGGTGTAGATGT CAATTGTGCTAAATGAAACACGGAATGTTATTCATCCTAAGCATAAACCA TACATATAGCTAGATTTAGGTGGGTTGATATTTCCAATCTTTTCACTAGT ACTACTTTCTGGCCGAAAACGATATTCTGCTTTTTTAACTGAAGTATTTG CTTAGCTATTTTGAGACACAGCAAGTTTCCTAAAAAGTCGCTCCCTTAGT AAACAAATTTAGTTATTCCAATTAGTTAACAATTAAGTTAACATTTAACT GACTTTTGACTTGAGCTGAGTTTTTAAAATCGACCCACCATTATCTCGAC ACAAATTTATCTGAGTGTATATTCCATATAGTTGTAACCACTTACAACGA AGTCAGAGCGAGTGCAAGAATGCACCAGAGATTGTTGTGTGATTTTATGT AATATGCTTGAATTTATAATTAGTTTCTAGTTAACGCATAGGAGATCGAT TCGATACAATACGCTTCAGCATCATCATTTCGTTGCGGTAGTTTATGCAT AAGCTTACATTTAAACAAACTACCGACTACCTACTAAGATAAGCAACCAA GAGGTATTTTGATAAGAACAATCCAAACACACGAGCTAAAACCACTTGAA ATTGCAAAACGAAAAATAGCTGAATAAATGAATAATTTTTAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9304-RA | 2795 | CG9304-RA | 40..2631 | 1..2591 | 12920 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17861634..17862543 | 1683..2590 | 4330 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 17859476..17860214 | 1..745 | 3540 | 98.7 | Plus |
chr2R | 21145070 | chr2R | 17860517..17861095 | 744..1322 | 2820 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 17861284..17861575 | 1393..1684 | 1445 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 17861150..17861221 | 1322..1393 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21975288..21976197 | 1683..2591 | 4500 | 99.9 | Plus |
2R | 25286936 | 2R | 21973126..21973870 | 1..745 | 3725 | 100 | Plus |
2R | 25286936 | 2R | 21974172..21974750 | 744..1322 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 21974938..21975229 | 1393..1684 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 21974803..21974874 | 1322..1393 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21976487..21977396 | 1683..2591 | 4510 | 99.8 | Plus |
2R | 25260384 | 2R | 21974325..21975069 | 1..745 | 3725 | 100 | Plus |
2R | 25260384 | 2R | 21975371..21975949 | 744..1322 | 2895 | 100 | Plus |
2R | 25260384 | 2R | 21976137..21976428 | 1393..1684 | 1460 | 100 | Plus |
2R | 25260384 | 2R | 21976002..21976073 | 1322..1393 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7148..7208 | 197..257 | 125 | 67.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17859476..17860214 | 1..745 | 98 | -> | Plus |
chr2R | 17860519..17861095 | 746..1322 | 99 | -> | Plus |
chr2R | 17861151..17861221 | 1323..1393 | 100 | -> | Plus |
chr2R | 17861285..17861574 | 1394..1683 | 99 | -> | Plus |
chr2R | 17861635..17862543 | 1684..2590 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..1914 | 6..1919 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..1914 | 6..1919 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..1914 | 6..1919 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..1914 | 6..1919 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..2591 | 1..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..2591 | 1..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 5..2595 | 1..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 1..2591 | 1..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9304-RA | 5..2595 | 1..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21973126..21973870 | 1..745 | 100 | -> | Plus |
2R | 21974174..21974750 | 746..1322 | 100 | -> | Plus |
2R | 21974804..21974874 | 1323..1393 | 100 | -> | Plus |
2R | 21974939..21975228 | 1394..1683 | 100 | -> | Plus |
2R | 21975289..21976196 | 1684..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21973126..21973870 | 1..745 | 100 | -> | Plus |
2R | 21974174..21974750 | 746..1322 | 100 | -> | Plus |
2R | 21974804..21974874 | 1323..1393 | 100 | -> | Plus |
2R | 21974939..21975228 | 1394..1683 | 100 | -> | Plus |
2R | 21975289..21976196 | 1684..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21973126..21973870 | 1..745 | 100 | -> | Plus |
2R | 21974174..21974750 | 746..1322 | 100 | -> | Plus |
2R | 21974804..21974874 | 1323..1393 | 100 | -> | Plus |
2R | 21974939..21975228 | 1394..1683 | 100 | -> | Plus |
2R | 21975289..21976196 | 1684..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17860631..17861375 | 1..745 | 100 | -> | Plus |
arm_2R | 17861679..17862255 | 746..1322 | 100 | -> | Plus |
arm_2R | 17862309..17862379 | 1323..1393 | 100 | -> | Plus |
arm_2R | 17862444..17862733 | 1394..1683 | 100 | -> | Plus |
arm_2R | 17862794..17863701 | 1684..2590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21974325..21975069 | 1..745 | 100 | -> | Plus |
2R | 21975373..21975949 | 746..1322 | 100 | -> | Plus |
2R | 21976003..21976073 | 1323..1393 | 100 | -> | Plus |
2R | 21976138..21976427 | 1394..1683 | 100 | -> | Plus |
2R | 21976488..21977395 | 1684..2590 | 99 | Plus |
Translation from 2 to 1918
> RE71821.hyp QMHRCRFGITSDCGFVVWKFPQNKNKNRPRCANLQAMHKGAPPWRVGCAD VASGMEWQLSGNPALGEEEEAANKQQQQQLIRSERWACNRRTILLGCICI IILIAVPSSNATHISGQFQTGDFFQFLAKFGFNKADLTRRNAYGYIYGNV TSTDKYAVPLTLVVLDRRTFLEFYGNRSQRSREAACTGMFSRLQRIAYDS TCNPRAKRDFLRHVPCPVNQLCSDEDEPGNVVPGSQFTYVINLEAEPRFW YLSLVACYQNKSTCQWHAHESLPRLSKLDSNLLNTLHYDIHLVNLHPNNS AAHPLTYQYSYDQQNLLEMYLVFLLVYIVLLPMQIYAVRRQKHPVTKLFT VSLLSEFVSLALITAHLIHYAANGVGEPRLQAAGDVLDILSRTTFMLILL LLAKGWAVTRQQISRTGWIILMSIWVPYCAFHVFLYIWDRTEVDVVSDID EYQTWPGWIVLILRTSFMMWFLYELRNTMKYEHSTKKLDFLLHLGASSLV WFIYLPIVAIVALQVSPMWRYKLLQGITNSADCMAYCVMTGLLWPHRAGQ YLLLAGTKYAGMDELDEFNEAPHIVRERERRRNSPPDEIAVGTGSRGMVL STSIPHSLNGDACNDLLEAEDLDAELLTDLNKNSHIVA*
Translation from 5 to 1918
> RE71821.pep MHRCRFGITSDCGFVVWKFPQNKNKNRPRCANLQAMHKGAPPWRVGCADV ASGMEWQLSGNPALGEEEEAANKQQQQQLIRSERWACNRRTILLGCICII ILIAVPSSNATHISGQFQTGDFFQFLAKFGFNKADLTRRNAYGYIYGNVT STDKYAVPLTLVVLDRRTFLEFYGNRSQRSREAACTGMFSRLQRIAYDST CNPRAKRDFLRHVPCPVNQLCSDEDEPGNVVPGSQFTYVINLEAEPRFWY LSLVACYQNKSTCQWHAHESLPRLSKLDSNLLNTLHYDIHLVNLHPNNSA AHPLTYQYSYDQQNLLEMYLVFLLVYIVLLPMQIYAVRRQKHPVTKLFTV SLLSEFVSLALITAHLIHYAANGVGEPRLQAAGDVLDILSRTTFMLILLL LAKGWAVTRQQISRTGWIILMSIWVPYCAFHVFLYIWDRTEVDVVSDIDE YQTWPGWIVLILRTSFMMWFLYELRNTMKYEHSTKKLDFLLHLGASSLVW FIYLPIVAIVALQVSPMWRYKLLQGITNSADCMAYCVMTGLLWPHRAGQY LLLAGTKYAGMDELDEFNEAPHIVRERERRRNSPPDEIAVGTGSRGMVLS TSIPHSLNGDACNDLLEAEDLDAELLTDLNKNSHIVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13279-PA | 601 | GF13279-PA | 1..601 | 36..637 | 2721 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22151-PA | 602 | GG22151-PA | 1..602 | 36..637 | 3055 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21140-PA | 624 | GH21140-PA | 92..624 | 106..637 | 2378 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9304-PB | 637 | CG9304-PB | 1..637 | 1..637 | 3397 | 100 | Plus |
CG9304-PA | 637 | CG9304-PA | 1..637 | 1..637 | 3397 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18742-PA | 575 | GI18742-PA | 27..575 | 97..637 | 2370 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16964-PA | 603 | GL16964-PA | 1..603 | 36..637 | 2615 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25007-PA | 603 | GA25007-PA | 1..603 | 36..637 | 2620 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15875-PA | 519 | GM15875-PA | 1..448 | 1..450 | 2308 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11636-PA | 600 | GD11636-PA | 1..600 | 36..637 | 3149 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21762-PA | 541 | GJ21762-PA | 7..541 | 106..637 | 2334 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15938-PA | 627 | GK15938-PA | 1..627 | 36..637 | 2455 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12232-PA | 600 | GE12232-PA | 1..600 | 36..637 | 3058 | 94.4 | Plus |