Clone RE71821 Report

Search the DGRC for RE71821

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:718
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG9304-RA
Protein status:RE71821.pep: gold
Sequenced Size:2601

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9304 2007-09-25 DGC5 pick
CG9304 2008-04-29 Release 5.5 accounting
CG9304 2008-04-29 Picked prior to 5.5
CG9304 2008-08-15 Release 5.9 accounting
CG9304 2008-12-18 5.12 accounting

Clone Sequence Records

RE71821.complete Sequence

2601 bp assembled on 2007-12-05

GenBank Submission: BT031347

> RE71821.complete
GACAAATGCATCGATGCCGTTTTGGCATCACTAGCGACTGCGGATTTGTG
GTGTGGAAATTTCCGCAAAACAAAAATAAAAATAGACCTCGGTGTGCCAA
CTTGCAAGCGATGCACAAAGGGGCGCCTCCTTGGCGAGTGGGCTGTGCCG
ACGTGGCATCCGGAATGGAGTGGCAGCTGTCCGGGAATCCCGCATTGGGA
GAAGAGGAAGAGGCTGCAAACAAACAACAACAACAACAACTGATAAGAAG
TGAAAGGTGGGCCTGCAATCGCAGGACTATTCTCCTGGGATGCATCTGCA
TCATTATCTTGATAGCTGTTCCCTCGAGCAATGCCACCCACATCAGCGGA
CAATTCCAGACGGGCGACTTCTTTCAGTTCCTGGCGAAATTCGGCTTCAA
CAAGGCAGATCTGACACGGCGCAATGCCTATGGATATATCTACGGCAATG
TCACGTCGACGGATAAGTATGCGGTTCCTTTGACACTCGTCGTCTTGGAC
AGAAGGACTTTCCTCGAGTTCTACGGCAACCGCAGTCAAAGGAGCCGGGA
AGCCGCCTGCACAGGGATGTTCTCCCGCCTCCAAAGGATCGCCTACGATT
CCACGTGCAATCCTCGTGCCAAAAGGGACTTCCTGCGTCATGTTCCCTGT
CCCGTCAATCAGCTCTGCAGCGATGAAGATGAACCCGGAAACGTAGTCCC
GGGATCGCAGTTCACCTACGTTATCAACCTGGAGGCGGAACCAAGATTTT
GGTACCTCTCCCTGGTGGCCTGTTATCAAAACAAAAGCACCTGCCAGTGG
CACGCGCACGAGAGCCTGCCAAGGCTAAGTAAATTGGACAGCAATCTCCT
CAACACGCTGCACTACGACATACATCTGGTCAACTTGCATCCGAACAACT
CGGCCGCACATCCACTTACCTACCAGTACTCGTACGATCAGCAGAATCTA
CTGGAGATGTACCTGGTGTTCCTGCTCGTCTACATTGTTCTGCTGCCCAT
GCAAATTTATGCGGTGCGGCGGCAGAAGCATCCAGTGACCAAGTTGTTTA
CCGTGAGTCTTCTCAGCGAGTTCGTCAGCCTGGCTCTGATCACCGCTCAC
CTGATTCACTATGCGGCCAATGGAGTGGGCGAGCCAAGATTGCAGGCAGC
TGGAGATGTCCTGGACATCTTGAGCCGCACCACATTTATGTTAATTCTGC
TGCTGCTGGCCAAAGGATGGGCAGTTACCAGACAGCAAATCAGCAGAACG
GGATGGATAATTCTGATGTCCATCTGGGTGCCATACTGCGCGTTCCACGT
GTTCCTTTACATCTGGGATAGGACGGAAGTCGATGTGGTTTCCGACATCG
ATGAATACCAGACGTGGCCCGGCTGGATAGTTTTAATACTACGCACCTCC
TTTATGATGTGGTTTCTTTACGAGCTCCGCAACACCATGAAGTACGAGCA
CTCAACAAAAAAACTTGACTTTCTACTTCACCTGGGCGCTTCCAGTTTGG
TGTGGTTTATCTACTTACCCATCGTGGCAATTGTGGCGCTGCAGGTCAGC
CCCATGTGGCGCTACAAGTTGCTGCAAGGTATCACCAACTCGGCGGACTG
CATGGCCTATTGTGTGATGACAGGTCTGTTGTGGCCACATAGAGCCGGCC
AATATCTGCTCCTAGCGGGCACCAAATATGCGGGCATGGATGAGTTGGAC
GAGTTCAATGAAGCGCCACACATTGTCAGGGAGCGTGAGAGGCGTCGGAA
TTCGCCGCCCGATGAAATTGCCGTTGGTACGGGGAGTCGGGGGATGGTGC
TATCCACTAGCATTCCACATTCGCTAAACGGCGATGCCTGCAACGATCTT
TTGGAGGCTGAAGACCTCGACGCGGAGCTGCTCACCGATCTTAACAAAAA
CAGTCATATTGTGGCGTAAATGCAACGGGTTAATTACTAGGTGTAGATGT
CAATTGTGCTAAATGAAACACGGAATGTTATTCATCCTAAGCATAAACCA
TACATATAGCTAGATTTAGGTGGGTTGATATTTCCAATCTTTTCACTAGT
ACTACTTTCTGGCCGAAAACGATATTCTGCTTTTTTAACTGAAGTATTTG
CTTAGCTATTTTGAGACACAGCAAGTTTCCTAAAAAGTCGCTCCCTTAGT
AAACAAATTTAGTTATTCCAATTAGTTAACAATTAAGTTAACATTTAACT
GACTTTTGACTTGAGCTGAGTTTTTAAAATCGACCCACCATTATCTCGAC
ACAAATTTATCTGAGTGTATATTCCATATAGTTGTAACCACTTACAACGA
AGTCAGAGCGAGTGCAAGAATGCACCAGAGATTGTTGTGTGATTTTATGT
AATATGCTTGAATTTATAATTAGTTTCTAGTTAACGCATAGGAGATCGAT
TCGATACAATACGCTTCAGCATCATCATTTCGTTGCGGTAGTTTATGCAT
AAGCTTACATTTAAACAAACTACCGACTACCTACTAAGATAAGCAACCAA
GAGGTATTTTGATAAGAACAATCCAAACACACGAGCTAAAACCACTTGAA
ATTGCAAAACGAAAAATAGCTGAATAAATGAATAATTTTTAAAAAAAAAA
A

RE71821.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9304-RA 2795 CG9304-RA 40..2631 1..2591 12920 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17861634..17862543 1683..2590 4330 98.9 Plus
chr2R 21145070 chr2R 17859476..17860214 1..745 3540 98.7 Plus
chr2R 21145070 chr2R 17860517..17861095 744..1322 2820 99.1 Plus
chr2R 21145070 chr2R 17861284..17861575 1393..1684 1445 99.7 Plus
chr2R 21145070 chr2R 17861150..17861221 1322..1393 360 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21975288..21976197 1683..2591 4500 99.9 Plus
2R 25286936 2R 21973126..21973870 1..745 3725 100 Plus
2R 25286936 2R 21974172..21974750 744..1322 2895 100 Plus
2R 25286936 2R 21974938..21975229 1393..1684 1460 100 Plus
2R 25286936 2R 21974803..21974874 1322..1393 360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21976487..21977396 1683..2591 4510 99.8 Plus
2R 25260384 2R 21974325..21975069 1..745 3725 100 Plus
2R 25260384 2R 21975371..21975949 744..1322 2895 100 Plus
2R 25260384 2R 21976137..21976428 1393..1684 1460 100 Plus
2R 25260384 2R 21976002..21976073 1322..1393 360 100 Plus
Blast to na_te.dros performed 2019-03-16 09:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 7148..7208 197..257 125 67.2 Plus

RE71821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:41:10 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17859476..17860214 1..745 98 -> Plus
chr2R 17860519..17861095 746..1322 99 -> Plus
chr2R 17861151..17861221 1323..1393 100 -> Plus
chr2R 17861285..17861574 1394..1683 99 -> Plus
chr2R 17861635..17862543 1684..2590 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:48 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..1914 6..1919 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:38:18 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..1914 6..1919 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:04 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..1914 6..1919 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..1914 6..1919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:02:35 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..2591 1..2590 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:47 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..2591 1..2590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:38:18 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 5..2595 1..2590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:04 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 1..2591 1..2590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9304-RA 5..2595 1..2590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:10 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21973126..21973870 1..745 100 -> Plus
2R 21974174..21974750 746..1322 100 -> Plus
2R 21974804..21974874 1323..1393 100 -> Plus
2R 21974939..21975228 1394..1683 100 -> Plus
2R 21975289..21976196 1684..2590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:10 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21973126..21973870 1..745 100 -> Plus
2R 21974174..21974750 746..1322 100 -> Plus
2R 21974804..21974874 1323..1393 100 -> Plus
2R 21974939..21975228 1394..1683 100 -> Plus
2R 21975289..21976196 1684..2590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:10 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21973126..21973870 1..745 100 -> Plus
2R 21974174..21974750 746..1322 100 -> Plus
2R 21974804..21974874 1323..1393 100 -> Plus
2R 21974939..21975228 1394..1683 100 -> Plus
2R 21975289..21976196 1684..2590 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:38:18 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17860631..17861375 1..745 100 -> Plus
arm_2R 17861679..17862255 746..1322 100 -> Plus
arm_2R 17862309..17862379 1323..1393 100 -> Plus
arm_2R 17862444..17862733 1394..1683 100 -> Plus
arm_2R 17862794..17863701 1684..2590 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:05 Download gff for RE71821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21974325..21975069 1..745 100 -> Plus
2R 21975373..21975949 746..1322 100 -> Plus
2R 21976003..21976073 1323..1393 100 -> Plus
2R 21976138..21976427 1394..1683 100 -> Plus
2R 21976488..21977395 1684..2590 99   Plus

RE71821.hyp Sequence

Translation from 2 to 1918

> RE71821.hyp
QMHRCRFGITSDCGFVVWKFPQNKNKNRPRCANLQAMHKGAPPWRVGCAD
VASGMEWQLSGNPALGEEEEAANKQQQQQLIRSERWACNRRTILLGCICI
IILIAVPSSNATHISGQFQTGDFFQFLAKFGFNKADLTRRNAYGYIYGNV
TSTDKYAVPLTLVVLDRRTFLEFYGNRSQRSREAACTGMFSRLQRIAYDS
TCNPRAKRDFLRHVPCPVNQLCSDEDEPGNVVPGSQFTYVINLEAEPRFW
YLSLVACYQNKSTCQWHAHESLPRLSKLDSNLLNTLHYDIHLVNLHPNNS
AAHPLTYQYSYDQQNLLEMYLVFLLVYIVLLPMQIYAVRRQKHPVTKLFT
VSLLSEFVSLALITAHLIHYAANGVGEPRLQAAGDVLDILSRTTFMLILL
LLAKGWAVTRQQISRTGWIILMSIWVPYCAFHVFLYIWDRTEVDVVSDID
EYQTWPGWIVLILRTSFMMWFLYELRNTMKYEHSTKKLDFLLHLGASSLV
WFIYLPIVAIVALQVSPMWRYKLLQGITNSADCMAYCVMTGLLWPHRAGQ
YLLLAGTKYAGMDELDEFNEAPHIVRERERRRNSPPDEIAVGTGSRGMVL
STSIPHSLNGDACNDLLEAEDLDAELLTDLNKNSHIVA*

RE71821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9304-PB 637 CG9304-PB 1..637 2..638 3397 100 Plus
CG9304-PA 637 CG9304-PA 1..637 2..638 3397 100 Plus

RE71821.pep Sequence

Translation from 5 to 1918

> RE71821.pep
MHRCRFGITSDCGFVVWKFPQNKNKNRPRCANLQAMHKGAPPWRVGCADV
ASGMEWQLSGNPALGEEEEAANKQQQQQLIRSERWACNRRTILLGCICII
ILIAVPSSNATHISGQFQTGDFFQFLAKFGFNKADLTRRNAYGYIYGNVT
STDKYAVPLTLVVLDRRTFLEFYGNRSQRSREAACTGMFSRLQRIAYDST
CNPRAKRDFLRHVPCPVNQLCSDEDEPGNVVPGSQFTYVINLEAEPRFWY
LSLVACYQNKSTCQWHAHESLPRLSKLDSNLLNTLHYDIHLVNLHPNNSA
AHPLTYQYSYDQQNLLEMYLVFLLVYIVLLPMQIYAVRRQKHPVTKLFTV
SLLSEFVSLALITAHLIHYAANGVGEPRLQAAGDVLDILSRTTFMLILLL
LAKGWAVTRQQISRTGWIILMSIWVPYCAFHVFLYIWDRTEVDVVSDIDE
YQTWPGWIVLILRTSFMMWFLYELRNTMKYEHSTKKLDFLLHLGASSLVW
FIYLPIVAIVALQVSPMWRYKLLQGITNSADCMAYCVMTGLLWPHRAGQY
LLLAGTKYAGMDELDEFNEAPHIVRERERRRNSPPDEIAVGTGSRGMVLS
TSIPHSLNGDACNDLLEAEDLDAELLTDLNKNSHIVA*

RE71821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13279-PA 601 GF13279-PA 1..601 36..637 2721 83.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22151-PA 602 GG22151-PA 1..602 36..637 3055 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21140-PA 624 GH21140-PA 92..624 106..637 2378 82.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9304-PB 637 CG9304-PB 1..637 1..637 3397 100 Plus
CG9304-PA 637 CG9304-PA 1..637 1..637 3397 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18742-PA 575 GI18742-PA 27..575 97..637 2370 79.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16964-PA 603 GL16964-PA 1..603 36..637 2615 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25007-PA 603 GA25007-PA 1..603 36..637 2620 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15875-PA 519 GM15875-PA 1..448 1..450 2308 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11636-PA 600 GD11636-PA 1..600 36..637 3149 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21762-PA 541 GJ21762-PA 7..541 106..637 2334 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15938-PA 627 GK15938-PA 1..627 36..637 2455 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12232-PA 600 GE12232-PA 1..600 36..637 3058 94.4 Plus