Clone RE71830 Report

Search the DGRC for RE71830

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:718
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG1399-RD
Protein status:RE71830.pep: gold
Preliminary Size:4110
Sequenced Size:2909

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1399 2004-01-12 Blastp of sequenced clone
CG1399 2008-04-29 Release 5.5 accounting
CG1399 2008-08-15 Release 5.9 accounting
CG1399 2008-12-18 5.12 accounting

Clone Sequence Records

RE71830.complete Sequence

2909 bp (2909 high quality bases) assembled on 2004-01-12

GenBank Submission: BT011354

> RE71830.complete
AGGGTGGACCTAGACTCAGACTAACGAATATACGGTGTGCTTCTGTTCCA
GGATGCGGATGGTTTAATCATACGACCGGGTGGACGAGGCTCGATATTGC
CCAAACTGGGCTTGGAATCGCCCACTGCCACACCGCATCTGCCCACCAAG
CGACGCAGTCTGGCAAAGAAAGTGCGTCCCCAGTCCGTGGTGGAGAATCT
CAGCCTGGGCCACTTCCCTGACCTCCTGGAGTCACCCTCCTCGCACCGAT
CTAACTCCCAGTTGTCCGCCCGTGCAGCTGCAGGTGCCGCCGCCTTGGTG
GGAGCCGCCAATATGACCGACAGCATCGCTGTGGACGACGGAGGAGTGGA
TGAGTGTTGCGACTCCATCACCGAGCTGCCCAGCGCCTCGTTCCAGCTCC
AGCATCTGGTCAAAGGACGTCCGAAGCGGGCCAAAACGCGTGCACCAACT
CGGCCGTTGGTCACCACCGAGTGCGCCGGGGGCAGCAGGGAAATTGGCGA
AGGTTTGGAACACTTCTTCCGGCCCGGTTCTGTTACGCCCACTACCCTGA
CTCCCCTAGTTTCTCCAACGTCGGAGGAATGCAGCTCCTTGTCGTTTGTG
GACAGTCCCACGATGAGCCGCGATGGGAATGGACATATGACCTCCGAGGA
GACCACTCCCATTCTGGAGGAACGCCGACCAATTAAATTGGAGCGCCAGT
CGCCATTGCTCAAAAGTGCGTCATGGGCCACCCGCTCCCGGTCCACGGAC
AATCTAGAGAAGTATTCGCCACTGGTGGGTCGTAAGTCCCCGCTGGTCAA
GATGCGAACTGAAGGAGGTCCCGGCTCGGGATCTGCCACCGGTGCTGAGG
AGACGTCTATGCCCAGTTCTAATCTGCTTAAGGCAACCGCCCGAGAGGAC
AAAACGCGTTCGCCCAGCAGCGATTCGATCAAAAGCCATGCCGCAGGCGA
GGGTAGTGTTATTGTGAAGACTGGCAACGGCATCCTGCGAACACCCATAG
TTCTGCAGAAGCCGCGTCCGTGGTCGGTTGTTGGAAGCGAGCCAAAGGCA
GGCGGAGATCTTATTACAGGCAATGGGAATGCCGACTCCAGCAAGACCAC
GCCGGACAAACTAGAAGAAGATGATGTCGAGATAGTGACATTTGGAAATA
CCTGCAGTGGCTCAATTGTTGGCATCACGCCGGGCATAGCTTTATCCACC
AGTGGCGGTGGAAGCATTGTGGGCATTACACCAGGAGGTGCCCTTGAAAA
GAAGTCTGTGCGAGAACTAGCAGCGGGTCTAAACAGGATGGAACTCCCCC
TAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAACGCGACTAGTGTCCGC
ACAAGCACGTCCTCCACAGGCTCCACCTCCAATAGTGTATCAGTCAGCTC
ATCCACGAACGCCAACACATCGATGACAGTATTAAACCAGAGCCAGACAC
GATCACGGATCGTAAGCTCGACCAGCAGCACTGACAGCACCGAGACCATC
ACAGAGCGCAGCACCACCAGCACTAGCAGCAGTTCATCCAGCAGCTACGA
GAAGCAGCATGCCAAGGCCTGTGCCAATTTAATCAGCAACGAAATCCTCA
GTATGCGCAACGGACAGTTGGGCGCCAAGTCTGGAAGCTGCGCAGAAAGT
GGTGGTGTGAAGCGGATAGCCGGCAAGGAGATCTCCACGCTATTCGAGGA
GACATTAGTTGAAGAACTGCAGCAGAGCATGGCGACCAGACGCGGTTTTA
GAGACTCGACCTACACCAAGGAGGATGTCGTTGATTTATAAGTGTTCTAG
TTATATGCTCAACATTCCCTCACGTCGATCCCTAGTCCTTCACCCAACCT
GCCACAGTTTCACGTGATAGATAGTAGGGTTGATGATAACGTTAAGTGAT
GATACTGATGATAAGGAGGAAATGAGATGAAATGGTGAAGACAGAAGGAT
AGAGGGAAACAAGGTTGCAACTTATCGTACTGAACCATTAATTTATGTGC
AATGCCGCGTGTGTGTTGTTTTCATTTGGCAATTTAGAATGAACGTGATT
TATTTATTGATACAAACCCTGATACTTTTATCCAAATTAACCTTTGCATA
TTTTTAAAAATGTTTTGTGTACTATATTTTATATTTTTATGTATTTAAAT
CAGTTAAGTGCCAATTATATACAGAATTAATCTACAAGTATTTTTAGCGT
GTGCTCTACATCAATTTCAATGAAACTAACGAAAATAACGCAATGAATAT
GATACACTATACATATTATGTAATTCGATTGAGTGTATAAGAACTATTTT
AATGGGCTAAACCTAAAAAAATCTAAATGAAATATAATATTTTTTATAAC
TGCTTCCAAATACAAACTTTATGGTTTATTATTTCCCCTTTTCTGTTTAC
CTCCCCTATACACATACTTATAGTATTTATAGTATTTAAGCGACAATCCG
TTTTCAAATTTTGAGGCGCGTTATGCCGCCAGAAACAAATGCATTTATTT
AGAAACAAGGCGGAGACCGACGATCTTATTGATTATTTTCTAAATAGTTA
ACAATTTAAGAAACTAGGCGAAAACGAAACCGATATAAAATTACTAAGCC
ATTTAACAACAGAAAACCGAAATCTATAGAAAACTAATTACCCTTATCGC
AAAACGATCAACTTCAATTTTGATGATCTAGTAGTTTGCACCAACGACAC
AGAATATATTCAGAGCAGCGTTTAAACTTTAAACCAGTCCACCACCGACC
ACACACTTCGAGTTTTGAGTGTATCCCGTTCTCATTCAAAACCCCGAAAC
GAAATAAGAGAAACTTAACGTGTTCATTAAAGTTAAGCAATTAAAACATC
ATTGTAATCTATTGAAATTCAAATTAAACGGAAACGATATTGGAAAAAAA
AAAAAAAAA

RE71830.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-RD 2919 CG1399-RD 30..2919 4..2893 14420 99.9 Plus
CG1399.p 6666 CG1399.p 3555..5202 52..1699 8225 99.9 Plus
CG1399.o 6493 CG1399.o 3382..5029 52..1699 8225 99.9 Plus
CG1399.p 6666 CG1399.p 5463..6660 1697..2894 5975 99.9 Plus
CG1399.o 6493 CG1399.o 5290..6487 1697..2894 5975 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3563847..3565043 2893..1697 5955 99.8 Minus
chr2R 21145070 chr2R 3566647..3567234 717..130 2925 99.8 Minus
chr2R 21145070 chr2R 3565304..3565712 1699..1291 2045 100 Minus
chr2R 21145070 chr2R 3566175..3566583 1120..712 2000 99.3 Minus
chr2R 21145070 chr2R 3568228..3568351 127..4 620 100 Minus
chr2R 21145070 chr2R 3565999..3566115 1235..1119 585 100 Minus
chr2R 21145070 chr2R 3565877..3565936 1291..1232 285 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7676539..7677736 2894..1697 5975 99.9 Minus
2R 25286936 2R 7679340..7679930 717..127 2955 100 Minus
2R 25286936 2R 7677997..7678405 1699..1291 2045 100 Minus
2R 25286936 2R 7678868..7679276 1120..712 2030 99.8 Minus
2R 25286936 2R 7680924..7681047 127..4 620 100 Minus
2R 25286936 2R 7678692..7678808 1235..1119 585 100 Minus
2R 25286936 2R 7678570..7678629 1291..1232 285 98.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7677738..7678935 2894..1697 5975 99.9 Minus
2R 25260384 2R 7680539..7681129 717..127 2955 100 Minus
2R 25260384 2R 7679196..7679604 1699..1291 2045 100 Minus
2R 25260384 2R 7680067..7680475 1120..712 2030 99.7 Minus
2R 25260384 2R 7682123..7682246 127..4 620 100 Minus
2R 25260384 2R 7679891..7680007 1235..1119 585 100 Minus
2R 25260384 2R 7679769..7679828 1291..1232 285 98.3 Minus
Blast to na_te.dros performed 2019-03-16 00:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 2095..2253 2155..1990 128 59.2 Minus
1360 3409 1360 1360 3409bp 1929..1997 1225..1297 121 67.1 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6568..6653 2537..2623 117 62.5 Plus

RE71830.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:40 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3563847..3565041 1699..2893 94 <- Minus
chr2R 3565305..3565711 1292..1698 100 <- Minus
chr2R 3565877..3565933 1235..1291 98 <- Minus
chr2R 3566000..3566113 1121..1234 100 <- Minus
chr2R 3566175..3566579 716..1120 99 <- Minus
chr2R 3566649..3567237 127..715 99 <- Minus
chr2R 3568229..3568354 1..126 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:43 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 305..1968 39..1702 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:51 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RC 2627..4290 39..1702 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:37 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RF 2690..2771 39..122 94 <- Plus
CG1399-RF 2794..4461 123..1791 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:43 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 305..1968 39..1702 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:00 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RF 2690..2771 39..122 94 <- Plus
CG1399-RF 2794..4461 123..1791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:52:47 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 447..2104 39..1698 99 -> Plus
CG1399-RA 2368..3035 1699..2366 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:51 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RD 1..2893 1..2893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:37 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RD 1..2893 1..2893 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:43 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 447..2104 39..1698 99 -> Plus
CG1399-RA 2368..3035 1699..2366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:00 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RD 1..2893 1..2893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:40 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7676540..7677734 1699..2893 99 <- Minus
2R 7677998..7678404 1292..1698 100 <- Minus
2R 7678570..7678626 1235..1291 98 <- Minus
2R 7678693..7678806 1121..1234 100 <- Minus
2R 7678868..7679272 716..1120 100 <- Minus
2R 7679342..7679930 127..715 100 <- Minus
2R 7680925..7681050 1..126 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:40 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7676540..7677734 1699..2893 99 <- Minus
2R 7677998..7678404 1292..1698 100 <- Minus
2R 7678570..7678626 1235..1291 98 <- Minus
2R 7678693..7678806 1121..1234 100 <- Minus
2R 7678868..7679272 716..1120 100 <- Minus
2R 7679342..7679930 127..715 100 <- Minus
2R 7680925..7681050 1..126 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:40 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7676540..7677734 1699..2893 99 <- Minus
2R 7677998..7678404 1292..1698 100 <- Minus
2R 7678570..7678626 1235..1291 98 <- Minus
2R 7678693..7678806 1121..1234 100 <- Minus
2R 7678868..7679272 716..1120 100 <- Minus
2R 7679342..7679930 127..715 100 <- Minus
2R 7680925..7681050 1..126 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:37 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3565503..3565909 1292..1698 100 <- Minus
arm_2R 3566075..3566131 1235..1291 98 <- Minus
arm_2R 3566198..3566311 1121..1234 100 <- Minus
arm_2R 3564045..3565239 1699..2893 99 <- Minus
arm_2R 3566373..3566777 716..1120 100 <- Minus
arm_2R 3566847..3567435 127..715 100 <- Minus
arm_2R 3568430..3568555 1..126 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:15 Download gff for RE71830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7680067..7680471 716..1120 100 <- Minus
2R 7677739..7678933 1699..2893 99 <- Minus
2R 7679197..7679603 1292..1698 100 <- Minus
2R 7679769..7679825 1235..1291 98 <- Minus
2R 7679892..7680005 1121..1234 100 <- Minus
2R 7680541..7681129 127..715 100 <- Minus
2R 7682124..7682249 1..126 99   Minus

RE71830.pep Sequence

Translation from 312 to 1790

> RE71830.pep
MTDSIAVDDGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLV
TTECAGGSREIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPT
MSRDGNGHMTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEK
YSPLVGRKSPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRS
PSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDL
ITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGG
SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTS
STGSTSNSVSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERS
TTSTSSSSSSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVK
RIAGKEISTLFEETLVEELQQSMATRRGFRDSTYTKEDVVDL*

RE71830.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11699-PA 682 GF11699-PA 193..682 1..492 1860 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10719-PA 1462 GG10719-PA 983..1462 1..492 2163 88.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20013-PA 680 GH20013-PA 198..679 1..462 1607 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
LRR-PF 1486 CG1399-PF 995..1486 1..492 2469 100 Plus
LRR-PD 492 CG1399-PD 1..492 1..492 2469 100 Plus
LRR-PC 1429 CG1399-PC 967..1428 1..462 2321 100 Plus
LRR-PA 655 CG1399-PA 193..654 1..462 2321 100 Plus
LRR-PB 1452 CG1399-PB 990..1451 1..462 2321 100 Plus
LRR-PG 1296 CG1399-PG 967..1292 1..326 1667 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19192-PA 683 GI19192-PA 198..682 1..462 1504 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11537-PA 632 GL11537-PA 193..631 1..462 1371 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24765-PA 664 GA24765-PA 193..663 1..462 1682 77.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20766-PA 777 GM20766-PA 282..777 1..492 2486 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10228-PA 574 GD10228-PA 81..574 1..492 2479 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20259-PA 650 GJ20259-PA 201..649 1..462 1464 68.4 Plus
Dvir\GJ19819-PA 82 GJ19819-PA 5..71 59..135 236 67.5 Plus
Dvir\GJ15172-PA 55 GJ15172-PA 7..53 6..56 165 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17998-PA 661 GK17998-PA 203..660 1..462 1328 69.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23706-PA 1447 GE23706-PA 990..1446 1..462 1967 90.7 Plus

RE71830.hyp Sequence

Translation from 312 to 1790

> RE71830.hyp
MTDSIAVDDGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLV
TTECAGGSREIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPT
MSRDGNGHMTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEK
YSPLVGRKSPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRS
PSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDL
ITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGG
SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTS
STGSTSNSVSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERS
TTSTSSSSSSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVK
RIAGKEISTLFEETLVEELQQSMATRRGFRDSTYTKEDVVDL*

RE71830.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-PF 1486 CG1399-PF 995..1486 1..492 2469 100 Plus
CG1399-PD 492 CG1399-PD 1..492 1..492 2469 100 Plus
CG1399-PC 1429 CG1399-PC 967..1428 1..462 2321 100 Plus
CG1399-PA 655 CG1399-PA 193..654 1..462 2321 100 Plus
CG1399-PB 1452 CG1399-PB 990..1451 1..462 2321 100 Plus