BDGP Sequence Production Resources |
Search the DGRC for RE71830
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 718 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1399-RD |
Protein status: | RE71830.pep: gold |
Preliminary Size: | 4110 |
Sequenced Size: | 2909 |
Gene | Date | Evidence |
---|---|---|
CG1399 | 2004-01-12 | Blastp of sequenced clone |
CG1399 | 2008-04-29 | Release 5.5 accounting |
CG1399 | 2008-08-15 | Release 5.9 accounting |
CG1399 | 2008-12-18 | 5.12 accounting |
2909 bp (2909 high quality bases) assembled on 2004-01-12
GenBank Submission: BT011354
> RE71830.complete AGGGTGGACCTAGACTCAGACTAACGAATATACGGTGTGCTTCTGTTCCA GGATGCGGATGGTTTAATCATACGACCGGGTGGACGAGGCTCGATATTGC CCAAACTGGGCTTGGAATCGCCCACTGCCACACCGCATCTGCCCACCAAG CGACGCAGTCTGGCAAAGAAAGTGCGTCCCCAGTCCGTGGTGGAGAATCT CAGCCTGGGCCACTTCCCTGACCTCCTGGAGTCACCCTCCTCGCACCGAT CTAACTCCCAGTTGTCCGCCCGTGCAGCTGCAGGTGCCGCCGCCTTGGTG GGAGCCGCCAATATGACCGACAGCATCGCTGTGGACGACGGAGGAGTGGA TGAGTGTTGCGACTCCATCACCGAGCTGCCCAGCGCCTCGTTCCAGCTCC AGCATCTGGTCAAAGGACGTCCGAAGCGGGCCAAAACGCGTGCACCAACT CGGCCGTTGGTCACCACCGAGTGCGCCGGGGGCAGCAGGGAAATTGGCGA AGGTTTGGAACACTTCTTCCGGCCCGGTTCTGTTACGCCCACTACCCTGA CTCCCCTAGTTTCTCCAACGTCGGAGGAATGCAGCTCCTTGTCGTTTGTG GACAGTCCCACGATGAGCCGCGATGGGAATGGACATATGACCTCCGAGGA GACCACTCCCATTCTGGAGGAACGCCGACCAATTAAATTGGAGCGCCAGT CGCCATTGCTCAAAAGTGCGTCATGGGCCACCCGCTCCCGGTCCACGGAC AATCTAGAGAAGTATTCGCCACTGGTGGGTCGTAAGTCCCCGCTGGTCAA GATGCGAACTGAAGGAGGTCCCGGCTCGGGATCTGCCACCGGTGCTGAGG AGACGTCTATGCCCAGTTCTAATCTGCTTAAGGCAACCGCCCGAGAGGAC AAAACGCGTTCGCCCAGCAGCGATTCGATCAAAAGCCATGCCGCAGGCGA GGGTAGTGTTATTGTGAAGACTGGCAACGGCATCCTGCGAACACCCATAG TTCTGCAGAAGCCGCGTCCGTGGTCGGTTGTTGGAAGCGAGCCAAAGGCA GGCGGAGATCTTATTACAGGCAATGGGAATGCCGACTCCAGCAAGACCAC GCCGGACAAACTAGAAGAAGATGATGTCGAGATAGTGACATTTGGAAATA CCTGCAGTGGCTCAATTGTTGGCATCACGCCGGGCATAGCTTTATCCACC AGTGGCGGTGGAAGCATTGTGGGCATTACACCAGGAGGTGCCCTTGAAAA GAAGTCTGTGCGAGAACTAGCAGCGGGTCTAAACAGGATGGAACTCCCCC TAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAACGCGACTAGTGTCCGC ACAAGCACGTCCTCCACAGGCTCCACCTCCAATAGTGTATCAGTCAGCTC ATCCACGAACGCCAACACATCGATGACAGTATTAAACCAGAGCCAGACAC GATCACGGATCGTAAGCTCGACCAGCAGCACTGACAGCACCGAGACCATC ACAGAGCGCAGCACCACCAGCACTAGCAGCAGTTCATCCAGCAGCTACGA GAAGCAGCATGCCAAGGCCTGTGCCAATTTAATCAGCAACGAAATCCTCA GTATGCGCAACGGACAGTTGGGCGCCAAGTCTGGAAGCTGCGCAGAAAGT GGTGGTGTGAAGCGGATAGCCGGCAAGGAGATCTCCACGCTATTCGAGGA GACATTAGTTGAAGAACTGCAGCAGAGCATGGCGACCAGACGCGGTTTTA GAGACTCGACCTACACCAAGGAGGATGTCGTTGATTTATAAGTGTTCTAG TTATATGCTCAACATTCCCTCACGTCGATCCCTAGTCCTTCACCCAACCT GCCACAGTTTCACGTGATAGATAGTAGGGTTGATGATAACGTTAAGTGAT GATACTGATGATAAGGAGGAAATGAGATGAAATGGTGAAGACAGAAGGAT AGAGGGAAACAAGGTTGCAACTTATCGTACTGAACCATTAATTTATGTGC AATGCCGCGTGTGTGTTGTTTTCATTTGGCAATTTAGAATGAACGTGATT TATTTATTGATACAAACCCTGATACTTTTATCCAAATTAACCTTTGCATA TTTTTAAAAATGTTTTGTGTACTATATTTTATATTTTTATGTATTTAAAT CAGTTAAGTGCCAATTATATACAGAATTAATCTACAAGTATTTTTAGCGT GTGCTCTACATCAATTTCAATGAAACTAACGAAAATAACGCAATGAATAT GATACACTATACATATTATGTAATTCGATTGAGTGTATAAGAACTATTTT AATGGGCTAAACCTAAAAAAATCTAAATGAAATATAATATTTTTTATAAC TGCTTCCAAATACAAACTTTATGGTTTATTATTTCCCCTTTTCTGTTTAC CTCCCCTATACACATACTTATAGTATTTATAGTATTTAAGCGACAATCCG TTTTCAAATTTTGAGGCGCGTTATGCCGCCAGAAACAAATGCATTTATTT AGAAACAAGGCGGAGACCGACGATCTTATTGATTATTTTCTAAATAGTTA ACAATTTAAGAAACTAGGCGAAAACGAAACCGATATAAAATTACTAAGCC ATTTAACAACAGAAAACCGAAATCTATAGAAAACTAATTACCCTTATCGC AAAACGATCAACTTCAATTTTGATGATCTAGTAGTTTGCACCAACGACAC AGAATATATTCAGAGCAGCGTTTAAACTTTAAACCAGTCCACCACCGACC ACACACTTCGAGTTTTGAGTGTATCCCGTTCTCATTCAAAACCCCGAAAC GAAATAAGAGAAACTTAACGTGTTCATTAAAGTTAAGCAATTAAAACATC ATTGTAATCTATTGAAATTCAAATTAAACGGAAACGATATTGGAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1399-RD | 2919 | CG1399-RD | 30..2919 | 4..2893 | 14420 | 99.9 | Plus |
CG1399.p | 6666 | CG1399.p | 3555..5202 | 52..1699 | 8225 | 99.9 | Plus |
CG1399.o | 6493 | CG1399.o | 3382..5029 | 52..1699 | 8225 | 99.9 | Plus |
CG1399.p | 6666 | CG1399.p | 5463..6660 | 1697..2894 | 5975 | 99.9 | Plus |
CG1399.o | 6493 | CG1399.o | 5290..6487 | 1697..2894 | 5975 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3563847..3565043 | 2893..1697 | 5955 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 3566647..3567234 | 717..130 | 2925 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 3565304..3565712 | 1699..1291 | 2045 | 100 | Minus |
chr2R | 21145070 | chr2R | 3566175..3566583 | 1120..712 | 2000 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 3568228..3568351 | 127..4 | 620 | 100 | Minus |
chr2R | 21145070 | chr2R | 3565999..3566115 | 1235..1119 | 585 | 100 | Minus |
chr2R | 21145070 | chr2R | 3565877..3565936 | 1291..1232 | 285 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7676539..7677736 | 2894..1697 | 5975 | 99.9 | Minus |
2R | 25286936 | 2R | 7679340..7679930 | 717..127 | 2955 | 100 | Minus |
2R | 25286936 | 2R | 7677997..7678405 | 1699..1291 | 2045 | 100 | Minus |
2R | 25286936 | 2R | 7678868..7679276 | 1120..712 | 2030 | 99.8 | Minus |
2R | 25286936 | 2R | 7680924..7681047 | 127..4 | 620 | 100 | Minus |
2R | 25286936 | 2R | 7678692..7678808 | 1235..1119 | 585 | 100 | Minus |
2R | 25286936 | 2R | 7678570..7678629 | 1291..1232 | 285 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7677738..7678935 | 2894..1697 | 5975 | 99.9 | Minus |
2R | 25260384 | 2R | 7680539..7681129 | 717..127 | 2955 | 100 | Minus |
2R | 25260384 | 2R | 7679196..7679604 | 1699..1291 | 2045 | 100 | Minus |
2R | 25260384 | 2R | 7680067..7680475 | 1120..712 | 2030 | 99.7 | Minus |
2R | 25260384 | 2R | 7682123..7682246 | 127..4 | 620 | 100 | Minus |
2R | 25260384 | 2R | 7679891..7680007 | 1235..1119 | 585 | 100 | Minus |
2R | 25260384 | 2R | 7679769..7679828 | 1291..1232 | 285 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 2095..2253 | 2155..1990 | 128 | 59.2 | Minus |
1360 | 3409 | 1360 1360 3409bp | 1929..1997 | 1225..1297 | 121 | 67.1 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6568..6653 | 2537..2623 | 117 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3563847..3565041 | 1699..2893 | 94 | <- | Minus |
chr2R | 3565305..3565711 | 1292..1698 | 100 | <- | Minus |
chr2R | 3565877..3565933 | 1235..1291 | 98 | <- | Minus |
chr2R | 3566000..3566113 | 1121..1234 | 100 | <- | Minus |
chr2R | 3566175..3566579 | 716..1120 | 99 | <- | Minus |
chr2R | 3566649..3567237 | 127..715 | 99 | <- | Minus |
chr2R | 3568229..3568354 | 1..126 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RA | 305..1968 | 39..1702 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RC | 2627..4290 | 39..1702 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RF | 2690..2771 | 39..122 | 94 | <- | Plus |
CG1399-RF | 2794..4461 | 123..1791 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RA | 305..1968 | 39..1702 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RF | 2690..2771 | 39..122 | 94 | <- | Plus |
CG1399-RF | 2794..4461 | 123..1791 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RA | 447..2104 | 39..1698 | 99 | -> | Plus |
CG1399-RA | 2368..3035 | 1699..2366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RD | 1..2893 | 1..2893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RD | 1..2893 | 1..2893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RA | 447..2104 | 39..1698 | 99 | -> | Plus |
CG1399-RA | 2368..3035 | 1699..2366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1399-RD | 1..2893 | 1..2893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7676540..7677734 | 1699..2893 | 99 | <- | Minus |
2R | 7677998..7678404 | 1292..1698 | 100 | <- | Minus |
2R | 7678570..7678626 | 1235..1291 | 98 | <- | Minus |
2R | 7678693..7678806 | 1121..1234 | 100 | <- | Minus |
2R | 7678868..7679272 | 716..1120 | 100 | <- | Minus |
2R | 7679342..7679930 | 127..715 | 100 | <- | Minus |
2R | 7680925..7681050 | 1..126 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7676540..7677734 | 1699..2893 | 99 | <- | Minus |
2R | 7677998..7678404 | 1292..1698 | 100 | <- | Minus |
2R | 7678570..7678626 | 1235..1291 | 98 | <- | Minus |
2R | 7678693..7678806 | 1121..1234 | 100 | <- | Minus |
2R | 7678868..7679272 | 716..1120 | 100 | <- | Minus |
2R | 7679342..7679930 | 127..715 | 100 | <- | Minus |
2R | 7680925..7681050 | 1..126 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7676540..7677734 | 1699..2893 | 99 | <- | Minus |
2R | 7677998..7678404 | 1292..1698 | 100 | <- | Minus |
2R | 7678570..7678626 | 1235..1291 | 98 | <- | Minus |
2R | 7678693..7678806 | 1121..1234 | 100 | <- | Minus |
2R | 7678868..7679272 | 716..1120 | 100 | <- | Minus |
2R | 7679342..7679930 | 127..715 | 100 | <- | Minus |
2R | 7680925..7681050 | 1..126 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3565503..3565909 | 1292..1698 | 100 | <- | Minus |
arm_2R | 3566075..3566131 | 1235..1291 | 98 | <- | Minus |
arm_2R | 3566198..3566311 | 1121..1234 | 100 | <- | Minus |
arm_2R | 3564045..3565239 | 1699..2893 | 99 | <- | Minus |
arm_2R | 3566373..3566777 | 716..1120 | 100 | <- | Minus |
arm_2R | 3566847..3567435 | 127..715 | 100 | <- | Minus |
arm_2R | 3568430..3568555 | 1..126 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7680067..7680471 | 716..1120 | 100 | <- | Minus |
2R | 7677739..7678933 | 1699..2893 | 99 | <- | Minus |
2R | 7679197..7679603 | 1292..1698 | 100 | <- | Minus |
2R | 7679769..7679825 | 1235..1291 | 98 | <- | Minus |
2R | 7679892..7680005 | 1121..1234 | 100 | <- | Minus |
2R | 7680541..7681129 | 127..715 | 100 | <- | Minus |
2R | 7682124..7682249 | 1..126 | 99 | Minus |
Translation from 312 to 1790
> RE71830.pep MTDSIAVDDGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLV TTECAGGSREIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPT MSRDGNGHMTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEK YSPLVGRKSPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRS PSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDL ITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGG SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTS STGSTSNSVSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERS TTSTSSSSSSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVK RIAGKEISTLFEETLVEELQQSMATRRGFRDSTYTKEDVVDL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11699-PA | 682 | GF11699-PA | 193..682 | 1..492 | 1860 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10719-PA | 1462 | GG10719-PA | 983..1462 | 1..492 | 2163 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20013-PA | 680 | GH20013-PA | 198..679 | 1..462 | 1607 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LRR-PF | 1486 | CG1399-PF | 995..1486 | 1..492 | 2469 | 100 | Plus |
LRR-PD | 492 | CG1399-PD | 1..492 | 1..492 | 2469 | 100 | Plus |
LRR-PC | 1429 | CG1399-PC | 967..1428 | 1..462 | 2321 | 100 | Plus |
LRR-PA | 655 | CG1399-PA | 193..654 | 1..462 | 2321 | 100 | Plus |
LRR-PB | 1452 | CG1399-PB | 990..1451 | 1..462 | 2321 | 100 | Plus |
LRR-PG | 1296 | CG1399-PG | 967..1292 | 1..326 | 1667 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19192-PA | 683 | GI19192-PA | 198..682 | 1..462 | 1504 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11537-PA | 632 | GL11537-PA | 193..631 | 1..462 | 1371 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24765-PA | 664 | GA24765-PA | 193..663 | 1..462 | 1682 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20766-PA | 777 | GM20766-PA | 282..777 | 1..492 | 2486 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10228-PA | 574 | GD10228-PA | 81..574 | 1..492 | 2479 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20259-PA | 650 | GJ20259-PA | 201..649 | 1..462 | 1464 | 68.4 | Plus |
Dvir\GJ19819-PA | 82 | GJ19819-PA | 5..71 | 59..135 | 236 | 67.5 | Plus |
Dvir\GJ15172-PA | 55 | GJ15172-PA | 7..53 | 6..56 | 165 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17998-PA | 661 | GK17998-PA | 203..660 | 1..462 | 1328 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23706-PA | 1447 | GE23706-PA | 990..1446 | 1..462 | 1967 | 90.7 | Plus |
Translation from 312 to 1790
> RE71830.hyp MTDSIAVDDGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLV TTECAGGSREIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPT MSRDGNGHMTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEK YSPLVGRKSPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRS PSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDL ITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGG SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTS STGSTSNSVSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERS TTSTSSSSSSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVK RIAGKEISTLFEETLVEELQQSMATRRGFRDSTYTKEDVVDL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1399-PF | 1486 | CG1399-PF | 995..1486 | 1..492 | 2469 | 100 | Plus |
CG1399-PD | 492 | CG1399-PD | 1..492 | 1..492 | 2469 | 100 | Plus |
CG1399-PC | 1429 | CG1399-PC | 967..1428 | 1..462 | 2321 | 100 | Plus |
CG1399-PA | 655 | CG1399-PA | 193..654 | 1..462 | 2321 | 100 | Plus |
CG1399-PB | 1452 | CG1399-PB | 990..1451 | 1..462 | 2321 | 100 | Plus |