Clone RE71854 Report

Search the DGRC for RE71854

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:718
Well:54
Vector:pFlc-1
Associated Gene/TranscriptTwdlE-RA
Protein status:RE71854.pep: gold
Preliminary Size:564
Sequenced Size:1359

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14534 2001-12-13 Blastp of sequenced clone
CG14534 2002-01-01 Sim4 clustering to Release 2
CG14534 2003-01-01 Sim4 clustering to Release 3
TwdlE 2008-04-29 Release 5.5 accounting
TwdlE 2008-08-15 Release 5.9 accounting
TwdlE 2008-12-18 5.12 accounting

Clone Sequence Records

RE71854.complete Sequence

1359 bp (1359 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070616

> RE71854.complete
TGGTGCAGTAAGAGGTTCCGCGTCGAAGCAGCACCACATTGCCAGTAACC
AGTAACCAGTAACAGCCAGTAGCACCTAGCCACCTGGAGCAGTGACAAAA
CCCGAAACGGATATACCCGAAATAAGCCACCCGAAAATGCATTCCAGTTG
TGTGTTAGTGGTCCTCATGGCCCTGGCTGCCCTGGTGGCCGCTCGTCCAG
AGCCGCCTCGTGACTCGTACAGTGCGCCCCCCTCCAGCAGCTACCAGCCA
AGTGGACCCAGCGGAGGCTACGGCGCCCCTGCGCCCCAGTACGGACCTCC
CCAGCAGGCGCCGGTGATTCACAAGCACGTCTACGTCCATGTACCTCCAC
CAGAGCCGGAATACCAGGCACCCAGGAAACCCCTTTACGTGCCACCTCCG
CAGAAGCACTACAAGATCGTCTTCATCAAGGCGCCATCTCCACCAGTACC
GACCGCCCCTGTAATACCGCAGTTCCCACAGAACGAAGAGAAGACCCTGG
TGTACGTGCTAGTCAAGAAGCCGGAGGAGCAGCCGGAGATCATTATCCCA
ACGCCAGCTCCCACCCAACCCAGCAAGCCGGAGGTGTACTTCATCCGCTA
CAAGACCCAGAAGGAGGAGACCGGACCCTATCCCAACAGTGTGGCGCCTC
CAGCGCCCGAGTACGGAGCTCCAGCTGCCCCGCCCGCACCCTCTGCTCCC
AGCAGCTCGTATGGGGCACCATCCCACTAGGCGATCCAGTCCAACCCGAA
TACCGATTTGCTTATCTCAACCCAACTCATGGCAAACTGCATATCTTATG
TGTATTGTATTATTTTCTGTTTCAAGGACCTTAACGCGTGACAAAGTTTA
CCAAGCAACGAATCTCCCCCATCCCCTCTCCACACCCAGCTCATAGGATT
ATTACTCCTATAGATGAGTAATTCTTATCTCTGATGTTGTTTCTACCTGA
TGTACGAGAAGTATGTTTTCCATCTAGGCTGTTTGTTTCAAATTGTTTGT
TTAGTCTTAAGTCTAGGTCTTTAAGCGAACGATGCGTTATACACTCACAC
AAAACACTCGAAACACTCACTGCGAGCTAGCCTTAGTTATCGATAGAGAT
ATCGATCCTGATACCGATTAACGATATATACGTGGTACATGATTTTCATC
ACAAACGCATTTTCAAGTAGGCAATTTATTCCAATTTCATATTGCACATT
TCGCACACGATTTGTCATTAAATAGAATGTGCGAAGCACTCGAAATGCAA
CAAAAAAAAACGAAGATTAAAATGATACTCAAGTATATAATGTTAAAAAC
ACAAAACATCAATGGCTAAATAAAAGTTTAACGAATTATCTGTAAAAAAA
AAAAAAAAA

RE71854.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1399 TwdlE-RA 44..1384 4..1344 6690 99.9 Plus
TwdlT-RA 1717 TwdlT-RA 779..915 479..615 310 81.7 Plus
TwdlT-RA 1717 TwdlT-RA 701..745 401..445 180 93.3 Plus
TwdlBeta-RA 712 TwdlBeta-RA 326..359 402..435 155 97 Plus
TwdlBeta-RA 712 TwdlBeta-RA 415..457 491..533 140 88.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7857030..7858001 1343..371 4770 99.6 Minus
chr2L 23010047 chr2L 7859452..7859674 376..154 1085 99.1 Minus
chr2L 23010047 chr2L 7859755..7859905 154..4 755 100 Minus
chr3R 27901430 chr3R 22873083..22873297 401..615 370 78.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7857956..7858929 1344..371 4855 99.9 Minus
2L 23513712 2L 7860380..7860602 376..154 1115 100 Minus
2L 23513712 2L 7860683..7860833 154..4 755 100 Minus
3R 32079331 3R 27050062..27050276 401..615 370 78.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7857956..7858929 1344..371 4855 99.8 Minus
2L 23513712 2L 7860380..7860602 376..154 1115 100 Minus
2L 23513712 2L 7860683..7860833 154..4 755 100 Minus
3R 31820162 3R 26790971..26791107 479..615 310 81.7 Plus
3R 31820162 3R 26790893..26790937 401..445 180 93.3 Plus
2R 25260384 2R 11864089..11864122 435..402 155 97 Minus
2R 25260384 2R 11863991..11864033 533..491 140 88.3 Minus
Blast to na_te.dros performed on 2019-03-15 16:40:01 has no hits.

RE71854.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:41:03 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7857030..7857996 376..1343 99 <- Minus
chr2L 7859453..7859673 155..375 99 <- Minus
chr2L 7859755..7859910 1..154 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:44 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 137..730 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:49 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 137..730 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:07:02 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 137..730 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:41:56 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 137..730 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:20 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 137..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:49 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..1345 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:49 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..1345 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:02 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 2..1346 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:41:56 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..1345 1..1343 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:20 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 2..1346 1..1343 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:03 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7857957..7858924 376..1343 99 <- Minus
2L 7860381..7860601 155..375 100 <- Minus
2L 7860683..7860838 1..154 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:03 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7857957..7858924 376..1343 99 <- Minus
2L 7860381..7860601 155..375 100 <- Minus
2L 7860683..7860838 1..154 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:03 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7857957..7858924 376..1343 99 <- Minus
2L 7860381..7860601 155..375 100 <- Minus
2L 7860683..7860838 1..154 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:02 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7857957..7858924 376..1343 99 <- Minus
arm_2L 7860381..7860601 155..375 100 <- Minus
arm_2L 7860683..7860838 1..154 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:55 Download gff for RE71854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7857957..7858924 376..1343 99 <- Minus
2L 7860381..7860601 155..375 100 <- Minus
2L 7860683..7860838 1..154 98   Minus

RE71854.pep Sequence

Translation from 136 to 729

> RE71854.pep
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSH*

RE71854.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22833-PA 197 GF22833-PA 1..197 1..197 924 97 Plus
Dana\GF23268-PA 286 GF23268-PA 132..232 60..160 353 74.3 Plus
Dana\GF11806-PA 195 GF11806-PA 1..189 1..182 333 50.8 Plus
Dana\GF23265-PA 369 GF23265-PA 104..236 23..161 239 52.8 Plus
Dana\GF22662-PA 385 GF22662-PA 157..260 57..160 238 46.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23499-PA 197 GG23499-PA 1..197 1..197 935 98 Plus
Dere\GG11520-PA 282 GG11520-PA 126..226 60..160 352 73.3 Plus
Dere\GG22628-PA 198 GG22628-PA 1..189 1..195 338 49 Plus
Dere\GG19076-PA 427 GG19076-PA 181..284 57..160 238 46.2 Plus
Dere\GG11517-PA 360 GG11517-PA 95..230 24..161 235 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11556-PA 196 GH11556-PA 1..196 1..197 570 92.9 Plus
Dgri\GH22882-PA 193 GH22882-PA 5..183 7..195 417 52.8 Plus
Dgri\GH18631-PA 293 GH18631-PA 138..238 60..160 335 69.3 Plus
Dgri\GH18628-PA 365 GH18628-PA 101..234 27..162 269 51.8 Plus
Dgri\GH11916-PA 242 GH11916-PA 4..174 1..160 231 36.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-PA 197 CG14534-PA 1..197 1..197 1071 100 Plus
Twdlbeta-PA 198 CG8986-PA 1..189 1..195 501 50.5 Plus
TwdlT-PA 286 CG5812-PA 113..233 40..163 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 95..288 24..196 367 44.2 Plus
TwdlG-PC 278 CG14643-PC 82..214 33..160 280 48.5 Plus
TwdlG-PB 278 CG14643-PB 82..214 33..160 280 48.5 Plus
TwdlG-PA 278 CG14643-PA 82..214 33..160 280 48.5 Plus
TwdlY-PA 247 CG32570-PA 6..177 6..160 247 38.3 Plus
Twdlalpha-PA 388 CG32574-PA 120..272 27..160 244 40.5 Plus
Muc91C-PB 949 CG7709-PB 229..416 18..196 206 35.8 Plus
Muc91C-PA 950 CG7709-PA 230..417 18..196 206 35.8 Plus
Muc91C-PB 949 CG7709-PB 375..564 21..196 193 36.9 Plus
Muc91C-PA 950 CG7709-PA 376..565 21..196 193 36.9 Plus
TwdlF-PA 354 CG14639-PA 134..243 56..160 187 42.7 Plus
TwdlZ-PB 210 CG32569-PB 29..182 55..188 177 30.6 Plus
TwdlX-PA 346 CG32571-PA 143..246 57..160 176 37.4 Plus
CG13722-PB 708 CG13722-PB 209..392 21..195 170 31.6 Plus
Vml-PB 578 CG34333-PB 100..272 23..197 168 33.7 Plus
Vml-PB 578 CG34333-PB 124..315 23..196 168 31.4 Plus
Vml-PA 578 CG34333-PA 100..272 23..197 168 33.7 Plus
Vml-PA 578 CG34333-PA 124..315 23..196 168 31.4 Plus
Muc91C-PB 949 CG7709-PB 658..845 21..196 164 29.6 Plus
Muc91C-PA 950 CG7709-PA 659..846 21..196 164 29.6 Plus
CG15021-PA 420 CG15021-PA 40..170 21..195 164 31.1 Plus
CG15021-PA 420 CG15021-PA 86..243 21..196 164 30.5 Plus
CG15021-PA 420 CG15021-PA 211..392 21..195 162 30.5 Plus
TwdlV-PA 251 CG14640-PA 50..175 38..160 159 36.2 Plus
Muc91C-PB 949 CG7709-PB 122..283 14..195 158 33 Plus
Muc91C-PA 950 CG7709-PA 123..284 14..195 158 33 Plus
CG15021-PA 420 CG15021-PA 130..308 23..187 158 32.4 Plus
CG31626-PB 285 CG31626-PB 77..268 24..196 157 32.3 Plus
CG31626-PA 285 CG31626-PA 77..268 24..196 157 32.3 Plus
psd-PB 381 CG9050-PB 166..349 24..195 157 31.1 Plus
psd-PA 381 CG9050-PA 166..349 24..195 157 31.1 Plus
CG13722-PB 708 CG13722-PB 351..527 19..185 156 30.4 Plus
CG31626-PB 285 CG31626-PB 49..214 23..196 155 32.1 Plus
CG31626-PA 285 CG31626-PA 49..214 23..196 155 32.1 Plus
CG32241-PB 415 CG32241-PB 66..246 20..195 154 29.9 Plus
Vml-PB 578 CG34333-PB 236..395 23..196 153 30.2 Plus
Vml-PA 578 CG34333-PA 236..395 23..196 153 30.2 Plus
CG11345-PA 242 CG11345-PA 3..209 6..195 153 29.9 Plus
CG13722-PB 708 CG13722-PB 119..299 23..195 150 30.9 Plus
CG13722-PB 708 CG13722-PB 455..657 23..195 150 30.4 Plus
Vml-PB 578 CG34333-PB 290..451 23..196 149 29.9 Plus
Vml-PA 578 CG34333-PA 290..451 23..196 149 29.9 Plus
Vml-PB 578 CG34333-PB 243..419 12..196 147 29.9 Plus
Vml-PA 578 CG34333-PA 243..419 12..196 147 29.9 Plus
CG32241-PB 415 CG32241-PB 186..332 21..183 146 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17047-PA 196 GI17047-PA 1..196 1..197 597 89.3 Plus
Dmoj\GI21267-PA 201 GI21267-PA 6..195 5..182 377 53.9 Plus
Dmoj\GI24299-PA 357 GI24299-PA 119..227 57..162 243 58.7 Plus
Dmoj\GI21932-PA 273 GI21932-PA 88..196 56..160 232 55 Plus
Dmoj\GI14656-PA 374 GI14656-PA 165..268 57..160 226 44.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19485-PA 197 GL19485-PA 1..197 1..197 597 92.9 Plus
Dper\GL23893-PA 392 GL23893-PA 132..290 24..195 319 48.6 Plus
Dper\GL23896-PA 263 GL23896-PA 131..218 60..147 289 69.3 Plus
Dper\GL10248-PA 181 GL10248-PA 70..172 60..195 262 50 Plus
Dper\GL12334-PA 296 GL12334-PA 130..232 60..160 230 53.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25978-PA 197 GA25978-PA 1..197 1..197 604 93.4 Plus
Dpse\GA19149-PA 293 GA19149-PA 131..231 60..160 351 73.3 Plus
Dpse\GA21455-PA 197 GA21455-PA 70..188 60..195 310 55.1 Plus
Dpse\GA27091-PA 375 GA27091-PA 113..271 24..195 277 49.1 Plus
Dpse\GA22498-PA 375 GA22498-PA 113..271 24..195 275 49.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13288-PA 197 GM13288-PA 1..197 1..197 929 97.5 Plus
Dsec\GM20406-PA 196 GM20406-PA 25..187 14..195 328 48.6 Plus
Dsec\GM10360-PA 281 GM10360-PA 117..249 60..194 324 58.5 Plus
Dsec\GM10357-PA 360 GM10357-PA 95..230 24..161 234 51.8 Plus
Dsec\GM13463-PA 247 GM13463-PA 1..177 1..160 233 36.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22462-PA 197 GD22462-PA 1..197 1..197 935 98.5 Plus
Dsim\GD25881-PA 198 GD25881-PA 1..189 1..195 351 49.5 Plus
Dsim\GD17305-PA 405 GD17305-PA 172..275 57..160 239 46.2 Plus
Dsim\GD21319-PA 360 GD21319-PA 95..230 24..161 235 51.8 Plus
Dsim\GD19694-PA 278 GD19694-PA 113..214 61..160 213 54.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10078-PA 196 GJ10078-PA 1..196 1..197 557 92.4 Plus
Dvir\GJ23081-PA 283 GJ23081-PA 130..278 60..196 347 56.4 Plus
Dvir\GJ20869-PA 197 GJ20869-PA 6..191 5..182 338 52.6 Plus
Dvir\GJ23078-PA 369 GJ23078-PA 129..271 57..191 272 54.5 Plus
Dvir\GJ14291-PA 281 GJ14291-PA 100..214 52..160 233 52.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23969-PA 196 GK23969-PA 1..196 1..197 583 91.9 Plus
Dwil\GK17917-PA 195 GK17917-PA 1..186 1..195 364 49.3 Plus
Dwil\GK11039-PA 272 GK11039-PA 116..216 60..160 353 74.3 Plus
Dwil\GK25418-PA 366 GK25418-PA 158..259 57..158 234 48 Plus
Dwil\GK25415-PA 249 GK25415-PA 81..183 58..160 224 44.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18328-PA 197 GE18328-PA 1..197 1..197 933 97.5 Plus
Dyak\GE13497-PA 198 GE13497-PA 1..189 1..195 351 49.5 Plus
Dyak\GE23709-PA 275 GE23709-PA 123..223 60..160 348 72.3 Plus
Dyak\GE17621-PA 429 GE17621-PA 197..300 57..160 240 46.2 Plus
Dyak\GE23705-PA 360 GE23705-PA 95..230 24..161 235 51.8 Plus

RE71854.hyp Sequence

Translation from 136 to 729

> RE71854.hyp
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSH*

RE71854.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-PA 197 CG14534-PA 1..197 1..197 1071 100 Plus
TwdlBeta-PA 198 CG8986-PA 1..189 1..195 501 50.5 Plus
TwdlT-PA 286 CG5812-PA 113..233 40..163 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 95..288 24..196 367 44.2 Plus
TwdlG-PC 278 CG14643-PC 82..214 33..160 280 48.5 Plus