Clone RE71924 Report

Search the DGRC for RE71924

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:719
Well:24
Vector:pFlc-1
Associated Gene/Transcriptpix-RA
Protein status:RE71924.pep: gold
Preliminary Size:1922
Sequenced Size:2228

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5651 2001-12-13 Blastp of sequenced clone
CG5651 2002-01-01 Sim4 clustering to Release 2
pix 2008-04-29 Release 5.5 accounting
pix 2008-08-15 Release 5.9 accounting
pix 2008-12-18 5.12 accounting

Clone Sequence Records

RE71924.complete Sequence

2228 bp (2228 high quality bases) assembled on 2001-12-13

GenBank Submission: AY089644

> RE71924.complete
GAGAAACTCATCAAAGCTCCCCCCTTTTGAAACTTGTTGGCTGACACGCA
AGAGCGTGCGTTCTGTCTGTTTTACAACAATTTCGGCCAAGTTCGCAGCA
TGTCGCGCAGAAAGGAGAACGAGGAGGTGGACAAGCAGACGCGTATTGCC
ATCGTCAGCGATGACAAGTGCAAGCCCAAACGGTGTCGGCAGGAGTGCAA
GAAGACCTGCCCAGTGGTGCGCATGGGCAAGCTCTGCATCGAGGTGACGC
CCACGTCCAAGATAGCCTCGTTGTCCGAGGAGCTGTGCATCGGTTGCGGT
ATTTGCGTCAAGAAATGCCCCTTCGAGGCCATCACAATCATCAACTTGCC
CAGCAATCTGGAGAAGCACACAACGCATCGATACAGCAAGAACTCCTTCA
AGCTGCATCGTCTGCCCATTCCGCGTCCCGGTGAAGTGCTCGGTCTTGTG
GGACAGAACGGTATTGGCAAGTCGACCGCTTTGAAGATCCTCGCGGGGAA
ACAAAAGCCGAACCTGGGGAAGTACGCCAATCCGCCCGACTGGACGGAGA
TCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGAACTACTTCACCAAGATC
TTGGAGGACAATCTGAAGGCGCTGGTCAAGCCGCAGTATGTGGATCAGAT
CCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCTTCTGGATAAGAAGGACG
AGAGGGAGCTGCAGACTAAGATTTGTGAAATGCTGGATCTATCGCACATC
CGTGATCGTGAGATCGCTCAGCTTTCTGGCGGAGAACTGCAACGCTTTGC
CATCGCCATGGTATGCATACAGAATGCAGACATCTTCATGTTCGACGAGC
CGTCCTCGTATTTGGATGTTAAGCAGCGTCTGAACGCTGCCTTGACCATT
CGATCACTCCTGCATCCCACCAAGTTTATTATTGTGGTGGAGCACGATTT
GTCTGTGCTGGATTACTTGTCTGACTTTATATGCTGCCTTTACGGAGTTC
CCGGCTGCTACGGTGTGGTTACTATGCCTTTCTCTGTGCGCGAAGGCATC
AACATTTTCCTCGATGGCTTTGTGCCCACCGAAAACATGCGATTCCGCAC
TGAGTCACTTACTTTCAAAGTATCTGAGTCCGCTACGGAGGAGGAGATCA
AGCGCATGAACCACTACGTATATCCCGCCATGGTCAAGACCCTGGGCAAG
TTCGAGTTGACGGTGGAAAAGGGTCACTTCAGCGACTCCGAGATCCTGGT
GCTCCTGGGCGAGAACGGTACAGGAAAGACGACGTTCATTCGCATGCTGG
CCGGTAACCTCCAACCCGATGGCGAGGTGGAACTGCCTATGCTGAATATT
TCCTACAAGCCCCAGAAGATTTCCCCGAAATTCCAAAATCATGTTCGCCA
TTTATTGCACGATAAGATTCGTGACGCCTACGTGCATCCTCAGTTTATTG
CCGATGTTATGAAACCCATGAAAATTGAGGAAATCATGGACCAGGAGGTG
CAGAACCTTTCCGGTGGTGAGTTGCAGCGAGTCGCCTTGGTCCTGTGTCT
TGGCAAGCCAGCGGATGTCTACCTCATCGACGAACCCTCTGCCTACTTGG
ATTCAGAGCAGCGTCTGGTGGCCGCCAAGGTTATCAAACGTTACATTCTG
CACGCCAAGAAAACTGGATTTGTGGTGGAGCACGATTTCATCATGGCCAC
CTACCTCGCCGACCGTGTCATCGTGATCGAGGGTCAGCCTTCAGTGAAGA
CGACAGCCTTTTCGCCGCAGTCGCTGCTAAATGGCATGAACCGCTTCCTC
GAACTGCTTGGTATTACGTTCCGTCGCGATCCCAACAACTTCAGACCCCG
CATTAACAAAAACAATTCGGTCAAGGACACAGAACAGAAACGCTCCGGCC
AGTTCTTCTTCTTGGAGGACGAAGCCTGCAACTAAGACAGGATCACGGGC
AACTTCGATGGGACAGCTCGTTTCTCTATGTTCTCCTCAGCTTTCCTTCG
TTCATTTTGCATTCTTTCGTTGAAGAACACATTTGCTTTCAAATTAATTT
GTTATTGTTGTCGAGGATTGCGTACAATCGAAAATTGGGGATTAATTGTA
CTTGATTAAAGTGAGTTTTATATACGTTTTTACAGCGAAATAAATAGTGA
ACCGAAACAACAGAATGTTGTTTTAAATGAGTCTAGCAAAAATAAACCAA
TTTTCTTTATGCAAAAAAAAAAAAAAAA

RE71924.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
pix-RA 2338 pix-RA 86..2301 1..2216 11065 99.9 Plus
pix-RB 2441 pix-RB 284..2404 96..2216 10590 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8964748..8965464 1640..924 3585 100 Minus
chr3L 24539361 chr3L 8965522..8966136 925..311 3030 99.5 Minus
chr3L 24539361 chr3L 8964121..8964691 2210..1640 2855 100 Minus
chr3L 24539361 chr3L 8966197..8966413 312..96 1085 100 Minus
chr3L 24539361 chr3L 8966720..8966817 98..1 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8972685..8973401 1640..924 3585 100 Minus
3L 28110227 3L 8973459..8974073 925..311 3075 100 Minus
3L 28110227 3L 8972052..8972628 2216..1640 2870 99.8 Minus
3L 28110227 3L 8974134..8974350 312..96 1085 100 Minus
3L 28110227 3L 8974657..8974754 98..1 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8965785..8966501 1640..924 3585 100 Minus
3L 28103327 3L 8966559..8967173 925..311 3075 100 Minus
3L 28103327 3L 8965152..8965728 2216..1640 2870 99.8 Minus
3L 28103327 3L 8967234..8967450 312..96 1085 100 Minus
3L 28103327 3L 8967757..8967854 98..1 490 100 Minus
Blast to na_te.dros performed 2019-03-16 23:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 781..867 390..302 115 61.8 Minus

RE71924.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:40:43 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8964119..8964690 1641..2212 99 <- Minus
chr3L 8964748..8965464 924..1640 100 <- Minus
chr3L 8965524..8966134 313..923 99 <- Minus
chr3L 8966197..8966410 99..312 100 <- Minus
chr3L 8966720..8966817 1..98 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:46 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RB 1..1836 100..1935 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:38 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RB 1..1836 100..1935 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:22:14 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1..1836 100..1935 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:40:47 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RB 1..1836 100..1935 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:15 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1..1836 100..1935 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:33 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1..2208 1..2208 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:38 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1..2208 1..2208 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:22:14 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 12..2223 1..2212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:40:47 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 1..2208 1..2208 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:15 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
pix-RA 12..2223 1..2212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:43 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8974657..8974754 1..98 100   Minus
3L 8972056..8972627 1641..2212 99 <- Minus
3L 8972685..8973401 924..1640 100 <- Minus
3L 8973461..8974071 313..923 100 <- Minus
3L 8974134..8974347 99..312 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:43 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8974657..8974754 1..98 100   Minus
3L 8972056..8972627 1641..2212 99 <- Minus
3L 8972685..8973401 924..1640 100 <- Minus
3L 8973461..8974071 313..923 100 <- Minus
3L 8974134..8974347 99..312 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:43 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8974657..8974754 1..98 100   Minus
3L 8972056..8972627 1641..2212 99 <- Minus
3L 8972685..8973401 924..1640 100 <- Minus
3L 8973461..8974071 313..923 100 <- Minus
3L 8974134..8974347 99..312 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:22:14 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8965156..8965727 1641..2212 99 <- Minus
arm_3L 8965785..8966501 924..1640 100 <- Minus
arm_3L 8966561..8967171 313..923 100 <- Minus
arm_3L 8967234..8967447 99..312 100 <- Minus
arm_3L 8967757..8967854 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:42 Download gff for RE71924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8965156..8965727 1641..2212 99 <- Minus
3L 8965785..8966501 924..1640 100 <- Minus
3L 8966561..8967171 313..923 100 <- Minus
3L 8967234..8967447 99..312 100 <- Minus
3L 8967757..8967854 1..98 100   Minus

RE71924.pep Sequence

Translation from 99 to 1934

> RE71924.pep
MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT
PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF
KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE
ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD
ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE
PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV
PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI
KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML
AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI
ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL
DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK
TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG
QFFFLEDEACN*

RE71924.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10137-PA 611 GF10137-PA 1..611 1..611 3234 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15047-PA 611 GG15047-PA 1..611 1..611 3274 100 Plus
Dere\GG19712-PA 1617 GG19712-PA 1286..1476 371..559 177 30.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14962-PA 611 GH14962-PA 1..608 1..608 3202 97.5 Plus
Dgri\GH11841-PA 1997 GH11841-PA 1673..1838 111..297 170 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
pix-PB 611 CG5651-PB 1..611 1..611 3172 100 Plus
pix-PA 611 CG5651-PA 1..611 1..611 3172 100 Plus
CG34120-PD 1981 CG34120-PD 1641..1839 370..559 175 28.6 Plus
CG34120-PC 1997 CG34120-PC 1657..1855 370..559 175 28.6 Plus
CG34120-PE 1998 CG34120-PE 1658..1856 370..559 175 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11489-PA 610 GI11489-PA 1..609 1..609 3220 98 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15045-PA 578 GL15045-PA 1..577 1..609 3001 92.9 Plus
Dper\GL16402-PA 1967 GL16402-PA 1635..1821 371..553 166 28 Plus
Dper\GL13853-PA 1301 GL13853-PA 282..460 379..543 161 29.5 Plus
Dper\GL13635-PA 1395 GL13635-PA 380..559 379..544 160 29.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19033-PA 610 GA19033-PA 1..609 1..609 3210 98.2 Plus
Dpse\GA14833-PA 1599 GA14833-PA 1279..1453 381..553 164 28.2 Plus
Dpse\GA26970-PB 1401 GA26970-PB 386..565 379..544 160 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24901-PA 611 GM24901-PA 1..611 1..611 3274 100 Plus
Dsec\GM23066-PA 1591 GM23066-PA 1251..1449 370..559 175 28.6 Plus
Dsec\GM23066-PA 1591 GM23066-PA 1270..1435 111..297 157 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12951-PA 611 GD12951-PA 1..611 1..611 3274 100 Plus
Dsim\GD24885-PA 350 GD24885-PA 30..208 381..559 181 30.1 Plus
Dsim\GD17520-PA 1488 GD17520-PA 832..1030 370..559 179 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14590-PA 610 GJ14590-PA 1..609 1..609 3210 98 Plus
Dvir\GJ13683-PA 610 GJ13683-PA 1..609 1..609 3210 98 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12286-PA 611 GK12286-PA 1..611 1..611 3167 96.4 Plus
Dwil\GK19939-PA 1605 GK19939-PA 1254..1440 371..553 176 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21271-PA 611 GE21271-PA 1..611 1..611 3267 99.8 Plus
Dyak\GE17910-PA 1591 GE17910-PA 1257..1433 371..543 178 31.3 Plus

RE71924.hyp Sequence

Translation from 99 to 1934

> RE71924.hyp
MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT
PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF
KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE
ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD
ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE
PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV
PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI
KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML
AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI
ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL
DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK
TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG
QFFFLEDEACN*

RE71924.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
pix-PB 611 CG5651-PB 1..611 1..611 3172 100 Plus
pix-PA 611 CG5651-PA 1..611 1..611 3172 100 Plus
CG34120-PD 1981 CG34120-PD 1641..1839 370..559 175 28.6 Plus
CG34120-PC 1997 CG34120-PC 1657..1855 370..559 175 28.6 Plus
CG34120-PE 1998 CG34120-PE 1658..1856 370..559 175 28.6 Plus