BDGP Sequence Production Resources |
Search the DGRC for RE71924
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 719 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | pix-RA |
Protein status: | RE71924.pep: gold |
Preliminary Size: | 1922 |
Sequenced Size: | 2228 |
Gene | Date | Evidence |
---|---|---|
CG5651 | 2001-12-13 | Blastp of sequenced clone |
CG5651 | 2002-01-01 | Sim4 clustering to Release 2 |
pix | 2008-04-29 | Release 5.5 accounting |
pix | 2008-08-15 | Release 5.9 accounting |
pix | 2008-12-18 | 5.12 accounting |
2228 bp (2228 high quality bases) assembled on 2001-12-13
GenBank Submission: AY089644
> RE71924.complete GAGAAACTCATCAAAGCTCCCCCCTTTTGAAACTTGTTGGCTGACACGCA AGAGCGTGCGTTCTGTCTGTTTTACAACAATTTCGGCCAAGTTCGCAGCA TGTCGCGCAGAAAGGAGAACGAGGAGGTGGACAAGCAGACGCGTATTGCC ATCGTCAGCGATGACAAGTGCAAGCCCAAACGGTGTCGGCAGGAGTGCAA GAAGACCTGCCCAGTGGTGCGCATGGGCAAGCTCTGCATCGAGGTGACGC CCACGTCCAAGATAGCCTCGTTGTCCGAGGAGCTGTGCATCGGTTGCGGT ATTTGCGTCAAGAAATGCCCCTTCGAGGCCATCACAATCATCAACTTGCC CAGCAATCTGGAGAAGCACACAACGCATCGATACAGCAAGAACTCCTTCA AGCTGCATCGTCTGCCCATTCCGCGTCCCGGTGAAGTGCTCGGTCTTGTG GGACAGAACGGTATTGGCAAGTCGACCGCTTTGAAGATCCTCGCGGGGAA ACAAAAGCCGAACCTGGGGAAGTACGCCAATCCGCCCGACTGGACGGAGA TCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGAACTACTTCACCAAGATC TTGGAGGACAATCTGAAGGCGCTGGTCAAGCCGCAGTATGTGGATCAGAT CCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCTTCTGGATAAGAAGGACG AGAGGGAGCTGCAGACTAAGATTTGTGAAATGCTGGATCTATCGCACATC CGTGATCGTGAGATCGCTCAGCTTTCTGGCGGAGAACTGCAACGCTTTGC CATCGCCATGGTATGCATACAGAATGCAGACATCTTCATGTTCGACGAGC CGTCCTCGTATTTGGATGTTAAGCAGCGTCTGAACGCTGCCTTGACCATT CGATCACTCCTGCATCCCACCAAGTTTATTATTGTGGTGGAGCACGATTT GTCTGTGCTGGATTACTTGTCTGACTTTATATGCTGCCTTTACGGAGTTC CCGGCTGCTACGGTGTGGTTACTATGCCTTTCTCTGTGCGCGAAGGCATC AACATTTTCCTCGATGGCTTTGTGCCCACCGAAAACATGCGATTCCGCAC TGAGTCACTTACTTTCAAAGTATCTGAGTCCGCTACGGAGGAGGAGATCA AGCGCATGAACCACTACGTATATCCCGCCATGGTCAAGACCCTGGGCAAG TTCGAGTTGACGGTGGAAAAGGGTCACTTCAGCGACTCCGAGATCCTGGT GCTCCTGGGCGAGAACGGTACAGGAAAGACGACGTTCATTCGCATGCTGG CCGGTAACCTCCAACCCGATGGCGAGGTGGAACTGCCTATGCTGAATATT TCCTACAAGCCCCAGAAGATTTCCCCGAAATTCCAAAATCATGTTCGCCA TTTATTGCACGATAAGATTCGTGACGCCTACGTGCATCCTCAGTTTATTG CCGATGTTATGAAACCCATGAAAATTGAGGAAATCATGGACCAGGAGGTG CAGAACCTTTCCGGTGGTGAGTTGCAGCGAGTCGCCTTGGTCCTGTGTCT TGGCAAGCCAGCGGATGTCTACCTCATCGACGAACCCTCTGCCTACTTGG ATTCAGAGCAGCGTCTGGTGGCCGCCAAGGTTATCAAACGTTACATTCTG CACGCCAAGAAAACTGGATTTGTGGTGGAGCACGATTTCATCATGGCCAC CTACCTCGCCGACCGTGTCATCGTGATCGAGGGTCAGCCTTCAGTGAAGA CGACAGCCTTTTCGCCGCAGTCGCTGCTAAATGGCATGAACCGCTTCCTC GAACTGCTTGGTATTACGTTCCGTCGCGATCCCAACAACTTCAGACCCCG CATTAACAAAAACAATTCGGTCAAGGACACAGAACAGAAACGCTCCGGCC AGTTCTTCTTCTTGGAGGACGAAGCCTGCAACTAAGACAGGATCACGGGC AACTTCGATGGGACAGCTCGTTTCTCTATGTTCTCCTCAGCTTTCCTTCG TTCATTTTGCATTCTTTCGTTGAAGAACACATTTGCTTTCAAATTAATTT GTTATTGTTGTCGAGGATTGCGTACAATCGAAAATTGGGGATTAATTGTA CTTGATTAAAGTGAGTTTTATATACGTTTTTACAGCGAAATAAATAGTGA ACCGAAACAACAGAATGTTGTTTTAAATGAGTCTAGCAAAAATAAACCAA TTTTCTTTATGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8964748..8965464 | 1640..924 | 3585 | 100 | Minus |
chr3L | 24539361 | chr3L | 8965522..8966136 | 925..311 | 3030 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 8964121..8964691 | 2210..1640 | 2855 | 100 | Minus |
chr3L | 24539361 | chr3L | 8966197..8966413 | 312..96 | 1085 | 100 | Minus |
chr3L | 24539361 | chr3L | 8966720..8966817 | 98..1 | 490 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 8972685..8973401 | 1640..924 | 3585 | 100 | Minus |
3L | 28110227 | 3L | 8973459..8974073 | 925..311 | 3075 | 100 | Minus |
3L | 28110227 | 3L | 8972052..8972628 | 2216..1640 | 2870 | 99.8 | Minus |
3L | 28110227 | 3L | 8974134..8974350 | 312..96 | 1085 | 100 | Minus |
3L | 28110227 | 3L | 8974657..8974754 | 98..1 | 490 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8965785..8966501 | 1640..924 | 3585 | 100 | Minus |
3L | 28103327 | 3L | 8966559..8967173 | 925..311 | 3075 | 100 | Minus |
3L | 28103327 | 3L | 8965152..8965728 | 2216..1640 | 2870 | 99.8 | Minus |
3L | 28103327 | 3L | 8967234..8967450 | 312..96 | 1085 | 100 | Minus |
3L | 28103327 | 3L | 8967757..8967854 | 98..1 | 490 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 390..302 | 115 | 61.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8964119..8964690 | 1641..2212 | 99 | <- | Minus |
chr3L | 8964748..8965464 | 924..1640 | 100 | <- | Minus |
chr3L | 8965524..8966134 | 313..923 | 99 | <- | Minus |
chr3L | 8966197..8966410 | 99..312 | 100 | <- | Minus |
chr3L | 8966720..8966817 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RB | 1..1836 | 100..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RB | 1..1836 | 100..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 1..1836 | 100..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RB | 1..1836 | 100..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 1..1836 | 100..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 1..2208 | 1..2208 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 1..2208 | 1..2208 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 12..2223 | 1..2212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 1..2208 | 1..2208 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pix-RA | 12..2223 | 1..2212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8974657..8974754 | 1..98 | 100 | Minus | |
3L | 8972056..8972627 | 1641..2212 | 99 | <- | Minus |
3L | 8972685..8973401 | 924..1640 | 100 | <- | Minus |
3L | 8973461..8974071 | 313..923 | 100 | <- | Minus |
3L | 8974134..8974347 | 99..312 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8974657..8974754 | 1..98 | 100 | Minus | |
3L | 8972056..8972627 | 1641..2212 | 99 | <- | Minus |
3L | 8972685..8973401 | 924..1640 | 100 | <- | Minus |
3L | 8973461..8974071 | 313..923 | 100 | <- | Minus |
3L | 8974134..8974347 | 99..312 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8974657..8974754 | 1..98 | 100 | Minus | |
3L | 8972056..8972627 | 1641..2212 | 99 | <- | Minus |
3L | 8972685..8973401 | 924..1640 | 100 | <- | Minus |
3L | 8973461..8974071 | 313..923 | 100 | <- | Minus |
3L | 8974134..8974347 | 99..312 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8965156..8965727 | 1641..2212 | 99 | <- | Minus |
arm_3L | 8965785..8966501 | 924..1640 | 100 | <- | Minus |
arm_3L | 8966561..8967171 | 313..923 | 100 | <- | Minus |
arm_3L | 8967234..8967447 | 99..312 | 100 | <- | Minus |
arm_3L | 8967757..8967854 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8965156..8965727 | 1641..2212 | 99 | <- | Minus |
3L | 8965785..8966501 | 924..1640 | 100 | <- | Minus |
3L | 8966561..8967171 | 313..923 | 100 | <- | Minus |
3L | 8967234..8967447 | 99..312 | 100 | <- | Minus |
3L | 8967757..8967854 | 1..98 | 100 | Minus |
Translation from 99 to 1934
> RE71924.pep MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG QFFFLEDEACN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10137-PA | 611 | GF10137-PA | 1..611 | 1..611 | 3234 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15047-PA | 611 | GG15047-PA | 1..611 | 1..611 | 3274 | 100 | Plus |
Dere\GG19712-PA | 1617 | GG19712-PA | 1286..1476 | 371..559 | 177 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14962-PA | 611 | GH14962-PA | 1..608 | 1..608 | 3202 | 97.5 | Plus |
Dgri\GH11841-PA | 1997 | GH11841-PA | 1673..1838 | 111..297 | 170 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pix-PB | 611 | CG5651-PB | 1..611 | 1..611 | 3172 | 100 | Plus |
pix-PA | 611 | CG5651-PA | 1..611 | 1..611 | 3172 | 100 | Plus |
CG34120-PD | 1981 | CG34120-PD | 1641..1839 | 370..559 | 175 | 28.6 | Plus |
CG34120-PC | 1997 | CG34120-PC | 1657..1855 | 370..559 | 175 | 28.6 | Plus |
CG34120-PE | 1998 | CG34120-PE | 1658..1856 | 370..559 | 175 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11489-PA | 610 | GI11489-PA | 1..609 | 1..609 | 3220 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15045-PA | 578 | GL15045-PA | 1..577 | 1..609 | 3001 | 92.9 | Plus |
Dper\GL16402-PA | 1967 | GL16402-PA | 1635..1821 | 371..553 | 166 | 28 | Plus |
Dper\GL13853-PA | 1301 | GL13853-PA | 282..460 | 379..543 | 161 | 29.5 | Plus |
Dper\GL13635-PA | 1395 | GL13635-PA | 380..559 | 379..544 | 160 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19033-PA | 610 | GA19033-PA | 1..609 | 1..609 | 3210 | 98.2 | Plus |
Dpse\GA14833-PA | 1599 | GA14833-PA | 1279..1453 | 381..553 | 164 | 28.2 | Plus |
Dpse\GA26970-PB | 1401 | GA26970-PB | 386..565 | 379..544 | 160 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24901-PA | 611 | GM24901-PA | 1..611 | 1..611 | 3274 | 100 | Plus |
Dsec\GM23066-PA | 1591 | GM23066-PA | 1251..1449 | 370..559 | 175 | 28.6 | Plus |
Dsec\GM23066-PA | 1591 | GM23066-PA | 1270..1435 | 111..297 | 157 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12951-PA | 611 | GD12951-PA | 1..611 | 1..611 | 3274 | 100 | Plus |
Dsim\GD24885-PA | 350 | GD24885-PA | 30..208 | 381..559 | 181 | 30.1 | Plus |
Dsim\GD17520-PA | 1488 | GD17520-PA | 832..1030 | 370..559 | 179 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14590-PA | 610 | GJ14590-PA | 1..609 | 1..609 | 3210 | 98 | Plus |
Dvir\GJ13683-PA | 610 | GJ13683-PA | 1..609 | 1..609 | 3210 | 98 | Plus |
Translation from 99 to 1934
> RE71924.hyp MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG QFFFLEDEACN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pix-PB | 611 | CG5651-PB | 1..611 | 1..611 | 3172 | 100 | Plus |
pix-PA | 611 | CG5651-PA | 1..611 | 1..611 | 3172 | 100 | Plus |
CG34120-PD | 1981 | CG34120-PD | 1641..1839 | 370..559 | 175 | 28.6 | Plus |
CG34120-PC | 1997 | CG34120-PC | 1657..1855 | 370..559 | 175 | 28.6 | Plus |
CG34120-PE | 1998 | CG34120-PE | 1658..1856 | 370..559 | 175 | 28.6 | Plus |