Clone RE72105 Report

Search the DGRC for RE72105

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:721
Well:5
Vector:pFlc-1
Associated Gene/TranscriptCG42747-RC
Protein status:RE72105.pep: gold
Sequenced Size:2871

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14910 2008-12-15 Manual selection by Sue Celniker

Clone Sequence Records

RE72105.complete Sequence

2871 bp assembled on 2009-04-23

GenBank Submission: BT082073.1

> RE72105.complete
ACTTTTGCGTTCAGTTCAAGTTGAGCGCTTTCTGACGTTCGTACAACGTA
TTTCCGCGGCCGTCTGCAATTCGCACCAACGGCGAGAATTTCGCGAAAGC
CCAACTGTCATTCTATCCGGTGTATAAATATTAAAGGTCCCCGTTTGGGG
AATTCGCATTTTATTCAAAAAACCATTTGTAGATTTGCGCGAAAATTGTG
CTATTAAAGTGCCTGGTTATACCGAATTACATATATGTATAAAACATCTA
ACATATGCAAAGTATTTATTTTTAAAACCCATTCAAGTGCCAAAGAGAAA
AGTTGTATGCAAAATAAAGCAAATAGCTGTATATTAAATATTAAAATCCA
TCTGCCTGCATCAAATCCATTGAATGAAAAATTCACAACAAGTGCAAAGC
AACAAATTGAAAAATCACTACAGCGTTGGGAAAAGTTGTGGCAAAAGTTT
CGCATTTCCCCGCCAATTTTCCCCCTTTTCGCGGTGACGCCTGCGCAGCT
GTTTGGGAAAAATCTAATTGGATACTTTTCTGCCAAACGGACAGAGGAAA
CGGAAGTTGGCTGCCATTCGCATTAGACTTACAGACACGGTCCACTGTGA
AGAACCTGTTCATGGATTTATGAGAGTCGCCCAGCCGCACAAGACGCGAT
CCAGGTCCAGATCCAGATACAGATCCATATCCAGATCAATGTGGCCGGAG
TGCACAGACTGAGGTCCGCCCGTAGGTAGAAAATGGCGGACATTTACCAG
GATGCCAGCACCACGCTGCGCTCCGTGTTTCCCAACTCGCGGCTGGACTC
GCTGGCCGGAGTGGATCGCCGGATGGAGAGTCAGCTGCCAGGACCACCGG
ATGCGGATGCAGTCACCACCGCCTCGAGCATTGGCTATAATCCGCTCAAC
GACGACGACTGGTGGGCCAATGCCATCGAAGTGGACACCTTCGACTCACC
GCTGGCCTTCGATGCTAGCGAAAATGGTCTGTGGAACGGACACTTTGTGC
CGCCGCCACCTCGCCCGCCCTTCCTGGATGAAAGCGTCGCCGCCGACGGC
CTGACCACCTGTGATCTGTGCACGTGGGCATGGCAGCGGAATGCCTACTC
CCTGGATGGTTCCATAGAAACCGCCGGCGAACTTGGATGGGCATTCACCC
TAATCATAGTTTCAATCATATCGGCTCTAATAGGTGCTATTGTAATGGTC
ATAGTTCTAAGATGTAGAAGAATTAAATCAGCGAATGCCAATGGTGGCCG
CCCGCAGCCTTGGTGGTGTCGCAATAACCGAAACGGTGGCCAAAATCGAT
CGCCCATCTCGATCAAGCACTCGGCGGACAGCATCCGGCGGCCCACGAGC
AACTCCGGCGTTTGGACCTGGCTGGGCGGCAGTCGTCGCTCCTCCGCCGG
TCCCGACCAGATCGGTCCGCCGTCGACGTCGCCGGCGGAGAACCACTATA
CCCACATGGACGATGCCTACAGTCCGGTGGGCGTGAGCGAGGCGCTCTAC
GCGGAACTGGATCGCGAGTCCGTGCGATCCGCCAATCCCTCATATCAGAA
TACGGCCTACAGTCAGTGTGGCGAGAAATACAATTACCAGGGCCACGAGC
AGGACATTCCCATGGTGGTCTCCTCGGCACCCAGCAGTGCTTACTATTCG
GATCTGTCGGTGACCGCGATGCCCGGCGGAGCGAGTGGCAGTAATCAGGG
CGCCTACGAGATTGTCGGACTGAACGTGATGTCCCAGCCGCTGCCCAACT
GGGATCATCATGGCGGAGGAGTGGGAGGTGGCGGTGTTGTGGCTGCAGGA
GCAGCAGCCGCCATCCTTGGAGGCGGTGGTGGTGGGGGCAATGGCCTTAC
GCCGGGCGAGGCTGCGGCGATGACGCAACGACGAGGTCCTCGACTGGCGG
CCATCAACGAGACGAGCACCAGCACAGTGCCCTCGGACTATGTCTAAATG
GAGTAAGCGTTTAAATACAAACATAATGTGAAATGTTCAGCGAGCTTAAC
ATGTTAATAGGATATAGAAGTACGTTATATACACCCCACAGATCTAAGGT
TAAATTTACATAATATTTAACACTGGCATACCATAGTGTTTAGTGTTTAG
CATGGACTTGTGTCTTTGGTTAATGTCTGAAATTATAATCTGTACCCGTT
GCCGATATTGGGATATATTTATACACACTTACAAGGCAAGAATGTATTAT
ATGTCTAGTTTTTATGTAGTCTCTAAGCAACGATTTAATCGTGGGTGATA
TTTAGCCTAAAAATATGCTATATTCTTATGTTCTACGTACTTTAAACATT
TTCTAAAAATGTAAAAACGACAACAAACGCATTTTTTCATAGGCTTAGAA
CGAGTGAAGTGAACGCGATGGACAAGAAATCGTATTTCCCCCCAGGATCA
GTACACGCAAATATAGAAACGATATATACATACGAATACAACATATTTAT
ACACTCAATATTTACAGCAGCCGAAAAGAGAAAACGCATTTAGCTCACCA
ACATATATAACTATACAAATATATATCTATAACAATAACTGAAGAATCAT
ATTTACAACGATTTTAATGCAACAGATTTCACCATATTTACCGGGGGAAA
TGATCGTGGCACGTCATATCATTTACCACACCATTATACATATGTATGCA
AAGCTATCTATATACTATACCATATACAATAAACAGACTCACGACCTTTA
GCAGATGTACTTTAGTTTTTAGTGGTCCGCGGCAGGAAGCGAATCCTCTG
CCGATTTATTTAGTAACACACACACACACACACACAATTCCTGTACATTA
TTGTTTTAGTTGAAAATATAATTAAACAATTATTGATATTTACATTCTGA
ATCCCAAAAAAAAAAAAAAAA

RE72105.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14911.a 2855 CG14911.a 1..2855 1..2855 14260 99.9 Plus
CG14911.b 1277 CG14911.b 31..1274 1234..2477 6190 99.8 Plus
CG14911-RA 978 CG14911-RA 31..978 1234..2181 4710 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6477119..6478398 1574..2855 6095 98.7 Plus
chr3L 24539361 chr3L 6393038..6393639 1..602 2905 98.8 Plus
chr3L 24539361 chr3L 6454005..6454494 623..1117 2350 98.8 Plus
chr3L 24539361 chr3L 6476666..6476998 1243..1575 1620 99.1 Plus
chr3L 24539361 chr3L 6468999..6469103 1116..1220 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6484683..6485968 1574..2859 6415 99.9 Plus
3L 28110227 3L 6400592..6401193 1..602 3010 100 Plus
3L 28110227 3L 6461556..6462050 623..1117 2475 100 Plus
3L 28110227 3L 6484230..6484562 1243..1575 1665 100 Plus
3L 28110227 3L 6476541..6476645 1116..1220 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6477783..6479068 1574..2859 6415 99.9 Plus
3L 28103327 3L 6393692..6394293 1..602 3010 100 Plus
3L 28103327 3L 6454656..6455150 623..1117 2475 100 Plus
3L 28103327 3L 6477330..6477662 1243..1575 1665 100 Plus
3L 28103327 3L 6469641..6469745 1116..1220 525 100 Plus
Blast to na_te.dros performed 2019-03-16 09:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1217..1328 2411..2522 145 61.1 Plus

RE72105.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:17 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6477121..6478398 1576..2855 97   Plus
chr3L 6393038..6393639 1..602 98 -> Plus
chr3L 6441560..6441581 603..624 100 -> Plus
chr3L 6454007..6454494 625..1117 90 -> Plus
chr3L 6469001..6469103 1118..1220 100 -> Plus
chr3L 6472730..6472752 1221..1243 100 -> Plus
chr3L 6476667..6476998 1244..1575 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:20 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG14911-RA 27..744 1229..1947 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:15 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 1..1215 733..1947 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:20 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 1..1215 733..1947 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:18 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 1..1215 733..1947 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:20 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG14911-RA 27..744 1229..1947 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:14 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 1..2855 1..2855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:20 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 3..2857 1..2855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:18 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
CG42747-RC 3..2857 1..2855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:17 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6400592..6401193 1..602 100 -> Plus
3L 6449107..6449128 603..624 100 -> Plus
3L 6461558..6462050 625..1117 100 -> Plus
3L 6476543..6476645 1118..1220 100 -> Plus
3L 6480295..6480317 1221..1243 100 -> Plus
3L 6484231..6484562 1244..1575 100 -> Plus
3L 6484685..6485964 1576..2855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:17 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6400592..6401193 1..602 100 -> Plus
3L 6449107..6449128 603..624 100 -> Plus
3L 6461558..6462050 625..1117 100 -> Plus
3L 6476543..6476645 1118..1220 100 -> Plus
3L 6480295..6480317 1221..1243 100 -> Plus
3L 6484231..6484562 1244..1575 100 -> Plus
3L 6484685..6485964 1576..2855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:17 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6400592..6401193 1..602 100 -> Plus
3L 6449107..6449128 603..624 100 -> Plus
3L 6461558..6462050 625..1117 100 -> Plus
3L 6476543..6476645 1118..1220 100 -> Plus
3L 6480295..6480317 1221..1243 100 -> Plus
3L 6484231..6484562 1244..1575 100 -> Plus
3L 6484685..6485964 1576..2855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:20 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6393692..6394293 1..602 100 -> Plus
arm_3L 6442207..6442228 603..624 100 -> Plus
arm_3L 6454658..6455150 625..1117 100 -> Plus
arm_3L 6469643..6469745 1118..1220 100 -> Plus
arm_3L 6473395..6473417 1221..1243 100 -> Plus
arm_3L 6477331..6477662 1244..1575 100 -> Plus
arm_3L 6477785..6479064 1576..2855 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:03 Download gff for RE72105.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6393692..6394293 1..602 100 -> Plus
3L 6442207..6442228 603..624 100 -> Plus
3L 6454658..6455150 625..1117 100 -> Plus
3L 6469643..6469745 1118..1220 100 -> Plus
3L 6473395..6473417 1221..1243 100 -> Plus
3L 6477331..6477662 1244..1575 100 -> Plus
3L 6477785..6479064 1576..2855 99   Plus

RE72105.pep Sequence

Translation from 732 to 1946

> RE72105.pep
MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI
GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE
SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI
GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS
IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG
VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP
SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG
GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP
SDYV*

RE72105.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23536-PA 389 GF23536-PA 1..389 1..404 1686 88.2 Plus
Dana\GF10901-PA 398 GF10901-PA 87..203 72..186 310 61.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15344-PA 386 GG15344-PA 1..386 1..404 1580 88.6 Plus
Dere\GG14060-PA 396 GG14060-PA 86..202 72..186 313 61.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15159-PA 372 GH15159-PA 11..372 2..404 1342 74.7 Plus
Dgri\GH16276-PA 397 GH16276-PA 115..231 72..186 315 61.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42747-PC 404 CG42747-PC 1..404 1..404 2158 100 Plus
CG13300-PA 388 CG13300-PA 53..370 33..320 420 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12098-PA 369 GI12098-PA 11..369 2..404 1350 75.2 Plus
Dmoj\GI13217-PA 388 GI13217-PA 91..247 72..202 315 51.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22579-PA 250 GL22579-PA 9..250 163..404 934 85.4 Plus
Dper\GL22518-PA 500 GL22518-PA 96..212 72..186 316 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24741-PA 422 GA24741-PA 11..422 2..404 1341 74 Plus
Dpse\GA12184-PA 475 GA12184-PA 96..212 72..186 315 61.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14785-PA 247 GM14785-PA 1..247 158..404 1223 95.5 Plus
Dsec\GM14782-PA 110 GM14782-PA 1..107 1..107 543 97.2 Plus
Dsec\GM13842-PA 384 GM13842-PA 80..196 72..186 313 61.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13957-PA 241 GD13957-PA 1..241 164..404 1213 97.5 Plus
Dsim\GD13956-PA 131 GD13956-PA 1..128 1..128 679 100 Plus
Dsim\GD13127-PA 387 GD13127-PA 83..199 72..186 311 60.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13372-PA 365 GJ13372-PA 11..365 2..404 1350 75.3 Plus
Dvir\GJ11992-PA 376 GJ11992-PA 93..249 72..202 315 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16848-PA 397 GK16848-PA 13..397 2..404 1167 71.4 Plus
Dwil\GK17338-PA 498 GK17338-PA 112..226 72..183 295 60.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21563-PA 248 GE21563-PA 1..248 158..404 1202 94.4 Plus
Dyak\GE21562-PA 184 GE21562-PA 1..137 1..136 602 92.1 Plus
Dyak\GE20484-PA 402 GE20484-PA 89..205 72..186 313 61.5 Plus

RE72105.hyp Sequence

Translation from 732 to 1946

> RE72105.hyp
MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI
GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE
SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI
GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS
IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG
VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP
SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG
GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP
SDYV*

RE72105.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42747-PC 404 CG42747-PC 1..404 1..404 2158 100 Plus
CG13300-PA 388 CG13300-PA 53..370 33..320 420 33.8 Plus