BDGP Sequence Production Resources |
Search the DGRC for RE72105
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 721 |
Well: | 5 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42747-RC |
Protein status: | RE72105.pep: gold |
Sequenced Size: | 2871 |
Gene | Date | Evidence |
---|---|---|
CG14910 | 2008-12-15 | Manual selection by Sue Celniker |
2871 bp assembled on 2009-04-23
GenBank Submission: BT082073.1
> RE72105.complete ACTTTTGCGTTCAGTTCAAGTTGAGCGCTTTCTGACGTTCGTACAACGTA TTTCCGCGGCCGTCTGCAATTCGCACCAACGGCGAGAATTTCGCGAAAGC CCAACTGTCATTCTATCCGGTGTATAAATATTAAAGGTCCCCGTTTGGGG AATTCGCATTTTATTCAAAAAACCATTTGTAGATTTGCGCGAAAATTGTG CTATTAAAGTGCCTGGTTATACCGAATTACATATATGTATAAAACATCTA ACATATGCAAAGTATTTATTTTTAAAACCCATTCAAGTGCCAAAGAGAAA AGTTGTATGCAAAATAAAGCAAATAGCTGTATATTAAATATTAAAATCCA TCTGCCTGCATCAAATCCATTGAATGAAAAATTCACAACAAGTGCAAAGC AACAAATTGAAAAATCACTACAGCGTTGGGAAAAGTTGTGGCAAAAGTTT CGCATTTCCCCGCCAATTTTCCCCCTTTTCGCGGTGACGCCTGCGCAGCT GTTTGGGAAAAATCTAATTGGATACTTTTCTGCCAAACGGACAGAGGAAA CGGAAGTTGGCTGCCATTCGCATTAGACTTACAGACACGGTCCACTGTGA AGAACCTGTTCATGGATTTATGAGAGTCGCCCAGCCGCACAAGACGCGAT CCAGGTCCAGATCCAGATACAGATCCATATCCAGATCAATGTGGCCGGAG TGCACAGACTGAGGTCCGCCCGTAGGTAGAAAATGGCGGACATTTACCAG GATGCCAGCACCACGCTGCGCTCCGTGTTTCCCAACTCGCGGCTGGACTC GCTGGCCGGAGTGGATCGCCGGATGGAGAGTCAGCTGCCAGGACCACCGG ATGCGGATGCAGTCACCACCGCCTCGAGCATTGGCTATAATCCGCTCAAC GACGACGACTGGTGGGCCAATGCCATCGAAGTGGACACCTTCGACTCACC GCTGGCCTTCGATGCTAGCGAAAATGGTCTGTGGAACGGACACTTTGTGC CGCCGCCACCTCGCCCGCCCTTCCTGGATGAAAGCGTCGCCGCCGACGGC CTGACCACCTGTGATCTGTGCACGTGGGCATGGCAGCGGAATGCCTACTC CCTGGATGGTTCCATAGAAACCGCCGGCGAACTTGGATGGGCATTCACCC TAATCATAGTTTCAATCATATCGGCTCTAATAGGTGCTATTGTAATGGTC ATAGTTCTAAGATGTAGAAGAATTAAATCAGCGAATGCCAATGGTGGCCG CCCGCAGCCTTGGTGGTGTCGCAATAACCGAAACGGTGGCCAAAATCGAT CGCCCATCTCGATCAAGCACTCGGCGGACAGCATCCGGCGGCCCACGAGC AACTCCGGCGTTTGGACCTGGCTGGGCGGCAGTCGTCGCTCCTCCGCCGG TCCCGACCAGATCGGTCCGCCGTCGACGTCGCCGGCGGAGAACCACTATA CCCACATGGACGATGCCTACAGTCCGGTGGGCGTGAGCGAGGCGCTCTAC GCGGAACTGGATCGCGAGTCCGTGCGATCCGCCAATCCCTCATATCAGAA TACGGCCTACAGTCAGTGTGGCGAGAAATACAATTACCAGGGCCACGAGC AGGACATTCCCATGGTGGTCTCCTCGGCACCCAGCAGTGCTTACTATTCG GATCTGTCGGTGACCGCGATGCCCGGCGGAGCGAGTGGCAGTAATCAGGG CGCCTACGAGATTGTCGGACTGAACGTGATGTCCCAGCCGCTGCCCAACT GGGATCATCATGGCGGAGGAGTGGGAGGTGGCGGTGTTGTGGCTGCAGGA GCAGCAGCCGCCATCCTTGGAGGCGGTGGTGGTGGGGGCAATGGCCTTAC GCCGGGCGAGGCTGCGGCGATGACGCAACGACGAGGTCCTCGACTGGCGG CCATCAACGAGACGAGCACCAGCACAGTGCCCTCGGACTATGTCTAAATG GAGTAAGCGTTTAAATACAAACATAATGTGAAATGTTCAGCGAGCTTAAC ATGTTAATAGGATATAGAAGTACGTTATATACACCCCACAGATCTAAGGT TAAATTTACATAATATTTAACACTGGCATACCATAGTGTTTAGTGTTTAG CATGGACTTGTGTCTTTGGTTAATGTCTGAAATTATAATCTGTACCCGTT GCCGATATTGGGATATATTTATACACACTTACAAGGCAAGAATGTATTAT ATGTCTAGTTTTTATGTAGTCTCTAAGCAACGATTTAATCGTGGGTGATA TTTAGCCTAAAAATATGCTATATTCTTATGTTCTACGTACTTTAAACATT TTCTAAAAATGTAAAAACGACAACAAACGCATTTTTTCATAGGCTTAGAA CGAGTGAAGTGAACGCGATGGACAAGAAATCGTATTTCCCCCCAGGATCA GTACACGCAAATATAGAAACGATATATACATACGAATACAACATATTTAT ACACTCAATATTTACAGCAGCCGAAAAGAGAAAACGCATTTAGCTCACCA ACATATATAACTATACAAATATATATCTATAACAATAACTGAAGAATCAT ATTTACAACGATTTTAATGCAACAGATTTCACCATATTTACCGGGGGAAA TGATCGTGGCACGTCATATCATTTACCACACCATTATACATATGTATGCA AAGCTATCTATATACTATACCATATACAATAAACAGACTCACGACCTTTA GCAGATGTACTTTAGTTTTTAGTGGTCCGCGGCAGGAAGCGAATCCTCTG CCGATTTATTTAGTAACACACACACACACACACACAATTCCTGTACATTA TTGTTTTAGTTGAAAATATAATTAAACAATTATTGATATTTACATTCTGA ATCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6477119..6478398 | 1574..2855 | 6095 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 6393038..6393639 | 1..602 | 2905 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 6454005..6454494 | 623..1117 | 2350 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 6476666..6476998 | 1243..1575 | 1620 | 99.1 | Plus |
chr3L | 24539361 | chr3L | 6468999..6469103 | 1116..1220 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 6484683..6485968 | 1574..2859 | 6415 | 99.9 | Plus |
3L | 28110227 | 3L | 6400592..6401193 | 1..602 | 3010 | 100 | Plus |
3L | 28110227 | 3L | 6461556..6462050 | 623..1117 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 6484230..6484562 | 1243..1575 | 1665 | 100 | Plus |
3L | 28110227 | 3L | 6476541..6476645 | 1116..1220 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6477783..6479068 | 1574..2859 | 6415 | 99.9 | Plus |
3L | 28103327 | 3L | 6393692..6394293 | 1..602 | 3010 | 100 | Plus |
3L | 28103327 | 3L | 6454656..6455150 | 623..1117 | 2475 | 100 | Plus |
3L | 28103327 | 3L | 6477330..6477662 | 1243..1575 | 1665 | 100 | Plus |
3L | 28103327 | 3L | 6469641..6469745 | 1116..1220 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1217..1328 | 2411..2522 | 145 | 61.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6477121..6478398 | 1576..2855 | 97 | Plus | |
chr3L | 6393038..6393639 | 1..602 | 98 | -> | Plus |
chr3L | 6441560..6441581 | 603..624 | 100 | -> | Plus |
chr3L | 6454007..6454494 | 625..1117 | 90 | -> | Plus |
chr3L | 6469001..6469103 | 1118..1220 | 100 | -> | Plus |
chr3L | 6472730..6472752 | 1221..1243 | 100 | -> | Plus |
chr3L | 6476667..6476998 | 1244..1575 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14911-RA | 27..744 | 1229..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 1..1215 | 733..1947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 1..1215 | 733..1947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 1..1215 | 733..1947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14911-RA | 27..744 | 1229..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 1..2855 | 1..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 3..2857 | 1..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42747-RC | 3..2857 | 1..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6400592..6401193 | 1..602 | 100 | -> | Plus |
3L | 6449107..6449128 | 603..624 | 100 | -> | Plus |
3L | 6461558..6462050 | 625..1117 | 100 | -> | Plus |
3L | 6476543..6476645 | 1118..1220 | 100 | -> | Plus |
3L | 6480295..6480317 | 1221..1243 | 100 | -> | Plus |
3L | 6484231..6484562 | 1244..1575 | 100 | -> | Plus |
3L | 6484685..6485964 | 1576..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6400592..6401193 | 1..602 | 100 | -> | Plus |
3L | 6449107..6449128 | 603..624 | 100 | -> | Plus |
3L | 6461558..6462050 | 625..1117 | 100 | -> | Plus |
3L | 6476543..6476645 | 1118..1220 | 100 | -> | Plus |
3L | 6480295..6480317 | 1221..1243 | 100 | -> | Plus |
3L | 6484231..6484562 | 1244..1575 | 100 | -> | Plus |
3L | 6484685..6485964 | 1576..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6400592..6401193 | 1..602 | 100 | -> | Plus |
3L | 6449107..6449128 | 603..624 | 100 | -> | Plus |
3L | 6461558..6462050 | 625..1117 | 100 | -> | Plus |
3L | 6476543..6476645 | 1118..1220 | 100 | -> | Plus |
3L | 6480295..6480317 | 1221..1243 | 100 | -> | Plus |
3L | 6484231..6484562 | 1244..1575 | 100 | -> | Plus |
3L | 6484685..6485964 | 1576..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6393692..6394293 | 1..602 | 100 | -> | Plus |
arm_3L | 6442207..6442228 | 603..624 | 100 | -> | Plus |
arm_3L | 6454658..6455150 | 625..1117 | 100 | -> | Plus |
arm_3L | 6469643..6469745 | 1118..1220 | 100 | -> | Plus |
arm_3L | 6473395..6473417 | 1221..1243 | 100 | -> | Plus |
arm_3L | 6477331..6477662 | 1244..1575 | 100 | -> | Plus |
arm_3L | 6477785..6479064 | 1576..2855 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6393692..6394293 | 1..602 | 100 | -> | Plus |
3L | 6442207..6442228 | 603..624 | 100 | -> | Plus |
3L | 6454658..6455150 | 625..1117 | 100 | -> | Plus |
3L | 6469643..6469745 | 1118..1220 | 100 | -> | Plus |
3L | 6473395..6473417 | 1221..1243 | 100 | -> | Plus |
3L | 6477331..6477662 | 1244..1575 | 100 | -> | Plus |
3L | 6477785..6479064 | 1576..2855 | 99 | Plus |
Translation from 732 to 1946
> RE72105.pep MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP SDYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23536-PA | 389 | GF23536-PA | 1..389 | 1..404 | 1686 | 88.2 | Plus |
Dana\GF10901-PA | 398 | GF10901-PA | 87..203 | 72..186 | 310 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15344-PA | 386 | GG15344-PA | 1..386 | 1..404 | 1580 | 88.6 | Plus |
Dere\GG14060-PA | 396 | GG14060-PA | 86..202 | 72..186 | 313 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15159-PA | 372 | GH15159-PA | 11..372 | 2..404 | 1342 | 74.7 | Plus |
Dgri\GH16276-PA | 397 | GH16276-PA | 115..231 | 72..186 | 315 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42747-PC | 404 | CG42747-PC | 1..404 | 1..404 | 2158 | 100 | Plus |
CG13300-PA | 388 | CG13300-PA | 53..370 | 33..320 | 420 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12098-PA | 369 | GI12098-PA | 11..369 | 2..404 | 1350 | 75.2 | Plus |
Dmoj\GI13217-PA | 388 | GI13217-PA | 91..247 | 72..202 | 315 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22579-PA | 250 | GL22579-PA | 9..250 | 163..404 | 934 | 85.4 | Plus |
Dper\GL22518-PA | 500 | GL22518-PA | 96..212 | 72..186 | 316 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24741-PA | 422 | GA24741-PA | 11..422 | 2..404 | 1341 | 74 | Plus |
Dpse\GA12184-PA | 475 | GA12184-PA | 96..212 | 72..186 | 315 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14785-PA | 247 | GM14785-PA | 1..247 | 158..404 | 1223 | 95.5 | Plus |
Dsec\GM14782-PA | 110 | GM14782-PA | 1..107 | 1..107 | 543 | 97.2 | Plus |
Dsec\GM13842-PA | 384 | GM13842-PA | 80..196 | 72..186 | 313 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13957-PA | 241 | GD13957-PA | 1..241 | 164..404 | 1213 | 97.5 | Plus |
Dsim\GD13956-PA | 131 | GD13956-PA | 1..128 | 1..128 | 679 | 100 | Plus |
Dsim\GD13127-PA | 387 | GD13127-PA | 83..199 | 72..186 | 311 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13372-PA | 365 | GJ13372-PA | 11..365 | 2..404 | 1350 | 75.3 | Plus |
Dvir\GJ11992-PA | 376 | GJ11992-PA | 93..249 | 72..202 | 315 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16848-PA | 397 | GK16848-PA | 13..397 | 2..404 | 1167 | 71.4 | Plus |
Dwil\GK17338-PA | 498 | GK17338-PA | 112..226 | 72..183 | 295 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21563-PA | 248 | GE21563-PA | 1..248 | 158..404 | 1202 | 94.4 | Plus |
Dyak\GE21562-PA | 184 | GE21562-PA | 1..137 | 1..136 | 602 | 92.1 | Plus |
Dyak\GE20484-PA | 402 | GE20484-PA | 89..205 | 72..186 | 313 | 61.5 | Plus |
Translation from 732 to 1946
> RE72105.hyp MADIYQDASTTLRSVFPNSRLDSLAGVDRRMESQLPGPPDADAVTTASSI GYNPLNDDDWWANAIEVDTFDSPLAFDASENGLWNGHFVPPPPRPPFLDE SVAADGLTTCDLCTWAWQRNAYSLDGSIETAGELGWAFTLIIVSIISALI GAIVMVIVLRCRRIKSANANGGRPQPWWCRNNRNGGQNRSPISIKHSADS IRRPTSNSGVWTWLGGSRRSSAGPDQIGPPSTSPAENHYTHMDDAYSPVG VSEALYAELDRESVRSANPSYQNTAYSQCGEKYNYQGHEQDIPMVVSSAP SSAYYSDLSVTAMPGGASGSNQGAYEIVGLNVMSQPLPNWDHHGGGVGGG GVVAAGAAAAILGGGGGGGNGLTPGEAAAMTQRRGPRLAAINETSTSTVP SDYV*