Clone RE72132 Report

Search the DGRC for RE72132

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:721
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG15440-RA
Protein status:RE72132.pep: gold
Preliminary Size:1083
Sequenced Size:1246

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15440 2002-01-01 Sim4 clustering to Release 2
CG15440 2002-02-22 Blastp of sequenced clone
CG15440 2003-01-01 Sim4 clustering to Release 3
CG15440 2008-04-29 Release 5.5 accounting
CG15440 2008-08-15 Release 5.9 accounting
CG15440 2008-12-18 5.12 accounting

Clone Sequence Records

RE72132.complete Sequence

1246 bp (1246 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089645

> RE72132.complete
ATAAATGCTTGACGGCCAGTCACTCATTTGTTTTGGTAAACATCATTTGT
CTCTGGAAAATATTCAATTGAACACGTATTTGAACAATTATGGCGTCCGT
GCATTGTCAACTGTGGATGGGAAGCCTGGAGTCCTACATGACGGAGAACT
TCATAATCGCCGCTTTCCGGAAGATGGGCGAAGATCCCACCACGGTGCGC
CTGATGCGCAACAAGTACACGGGCGAACCAGCCGGCTACTGCTTCGTCAA
CTTCATATCCGATGACCATGCGCTGGACGCGATGCACAAGCTAAACGGTA
AGCCCATTCCGGGCACCAATCCCATTGTGCGATTCCGTCTTAACTCGGCC
AGCAACTCGTACAAGCTGCCCGGGAATGAACGCGAATTTAGCGTCTGGGT
GGGCGACCTCAGCTCGGACGTGGACGACTATCAGCTGTACAAGGTGTTCT
CCAGCAAGTTCACATCGATCAAAACCGCCAAGGTGATCTTGGACAGCCTG
GGGTTTTCCAAGGGTTACGGCTTTGTGCGATTTGGCATCGAGGATGAGCA
GAAATCAGCGCTGTACGACATGAACGGGTACATCGGATTGGGTACCAAGC
CCATAAAGATTTGCAATGCCGTGCCCAAACCCAAATCCGAGTTGGGTGGT
GCTGTGGGCGAAGGCAACACAAACTATGGATATGGAAGCGGTATGACTGC
AGCAGGTGGCACCGACTACTCGCAGTACTACGACCCCACCAGCACCTATT
GGCAGGGATACCAGGCCTGGCAAGGTTACTACGAGCAGGCCGGTGCTTCG
ATCACAGATGCGGCTGCATACTACCAGCAGGCCATGTCGCAGTCGCACTC
TAATCCGCAGACTCTGGCCCAGCACGCCGAGGCCTGGAGCGCACAACGCA
GCGCCCAGTACGAGCAGCAGCAGCAGCAGCAGACCGCTTCCGCCGCCAAT
GGAGCTGAGGATGAGAACGGACTGGTGGAGCACAAGTTCGTCCTGGATGT
GGACAAACTGAACCGAGAGGCCATTGATGCCGACCGCCGTCTGTACGATG
CTCTGGAGAGCTCTAAGTGGCTGCCCATTGAGCAGCTGGAAGTCTTTTAG
GATACTTATCTACTATATTTATAGCTTACTATAATTACAGCTTAGATATA
AGCAAAAAATATAAAAGCCTGACTTGTAGCGTATTATTGTTTTTGAGCCT
GCTATAAACTTTTATGCTCCTGAAAAAAAACAAAAAAAAAAAAAAA

RE72132.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1301 CG15440-RA 46..1269 1..1224 6105 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4452307..4453405 1224..126 5330 99 Minus
chr2L 23010047 chr2L 4453467..4453569 125..23 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453167..4454265 1224..126 5480 99.9 Minus
2L 23513712 2L 4454327..4454451 125..1 625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453167..4454265 1224..126 5480 99.9 Minus
2L 23513712 2L 4454327..4454451 125..1 625 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:14:08 has no hits.

RE72132.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:46 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4452307..4453405 126..1224 97 <- Minus
chr2L 4453467..4453585 1..125 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:53 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 90..1100 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:34 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 90..1100 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:49 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 90..1100 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:22 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 90..1100 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:42 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 90..1100 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:49 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 7..1230 1..1224 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:34 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 7..1230 1..1224 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:49 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 3..1224 1..1222 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:22 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 7..1230 1..1224 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:42 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 3..1224 1..1222 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:46 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453167..4454265 126..1224 99 <- Minus
2L 4454327..4454451 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:46 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453167..4454265 126..1224 99 <- Minus
2L 4454327..4454451 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:46 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453167..4454265 126..1224 99 <- Minus
2L 4454327..4454451 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:49 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453167..4454265 126..1224 99 <- Minus
arm_2L 4454327..4454451 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:27 Download gff for RE72132.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453167..4454265 126..1224 99 <- Minus
2L 4454327..4454451 1..125 100   Minus

RE72132.pep Sequence

Translation from 89 to 1099

> RE72132.pep
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVF*

RE72132.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24033-PA 339 GF24033-PA 1..339 1..336 1550 87.1 Plus
Dana\GF20968-PA 379 GF20968-PA 127..289 5..174 156 29.9 Plus
Dana\GF14992-PA 660 GF14992-PA 100..264 8..174 156 27.8 Plus
Dana\GF20385-PA 341 GF20385-PA 15..192 8..191 153 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24374-PA 336 GG24374-PA 1..336 1..336 1676 95.3 Plus
Dere\GG17637-PA 335 GG17637-PA 86..246 7..174 156 30.2 Plus
Dere\GG24901-PA 446 GG24901-PA 114..278 8..174 155 27.8 Plus
Dere\GG21846-PA 635 GG21846-PA 4..172 8..184 153 28.6 Plus
Dere\GG19577-PA 339 GG19577-PA 15..192 8..191 152 29.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11659-PA 364 GH11659-PA 1..364 1..336 1486 80.8 Plus
Dgri\GH13638-PA 726 GH13638-PA 115..274 8..174 163 29.2 Plus
Dgri\GH17589-PA 340 GH17589-PA 15..192 8..191 158 29.8 Plus
Dgri\GH24172-PA 365 GH24172-PA 116..278 5..174 155 29.9 Plus
Dgri\GH21052-PA 645 GH21052-PA 4..172 8..184 153 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 336 CG15440-PA 1..336 1..336 1779 100 Plus
Rbp9-PH 439 CG3151-PH 117..309 13..207 153 28.4 Plus
Rbp9-PG 439 CG3151-PG 117..309 13..207 153 28.4 Plus
Rbp9-PF 439 CG3151-PF 117..309 13..207 153 28.4 Plus
Rbp9-PE 439 CG3151-PE 117..309 13..207 153 28.4 Plus
Rbp9-PJ 684 CG3151-PJ 117..309 13..207 153 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17961-PA 346 GI17961-PA 1..346 1..336 1522 86.7 Plus
Dmoj\GI16317-PA 340 GI16317-PA 15..192 8..191 159 29.8 Plus
Dmoj\GI11879-PA 724 GI11879-PA 126..290 8..174 156 27.8 Plus
Dmoj\GI21573-PA 367 GI21573-PA 116..278 5..174 155 29.9 Plus
Dmoj\GI18654-PA 645 GI18654-PA 4..172 8..184 151 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15405-PA 339 GL15405-PA 1..339 1..336 1575 90.3 Plus
Dper\GL26299-PA 678 GL26299-PA 112..271 8..174 160 28.7 Plus
Dper\GL14245-PA 618 GL14245-PA 122..279 8..172 158 30.2 Plus
Dper\GL26885-PA 377 GL26885-PA 124..288 3..174 157 30.1 Plus
Dper\GL21313-PA 341 GL21313-PA 15..192 8..191 153 29.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13731-PA 339 GA13731-PA 1..339 1..336 1575 90.3 Plus
Dpse\GA24952-PA 113 GA24952-PA 1..113 223..336 443 85.2 Plus
Dpse\GA22653-PA 377 GA22653-PA 124..288 3..174 157 30.1 Plus
Dpse\GA22715-PA 672 GA22715-PA 122..279 8..172 157 30.2 Plus
Dpse\GA17684-PA 341 GA17684-PA 15..192 8..191 154 29.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18090-PA 336 GM18090-PA 1..336 1..336 1791 98.8 Plus
Dsec\Sxl-PA 301 GM17480-PA 116..278 5..174 158 29.9 Plus
Dsec\GM18380-PA 650 GM18380-PA 318..482 8..174 158 27.8 Plus
Dsec\GM21847-PA 634 GM21847-PA 4..172 8..184 149 27.1 Plus
Dsec\GM12470-PA 299 GM12470-PA 15..192 8..191 148 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22708-PA 336 GD22708-PA 1..336 1..336 1796 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17734-PA 345 GJ17734-PA 1..345 1..336 1509 86.1 Plus
Dvir\GJ15655-PA 340 GJ15655-PA 15..192 8..191 159 29.8 Plus
Dvir\Sxl-PA 368 GJ16698-PA 117..279 5..174 155 29.9 Plus
Dvir\GJ13991-PA 725 GJ13991-PA 104..268 8..174 154 27.8 Plus
Dvir\GJ21671-PA 645 GJ21671-PA 4..172 8..184 153 27.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24678-PA 357 GK24678-PA 1..357 1..336 1549 85.4 Plus
Dwil\GK19652-PA 638 GK19652-PA 4..172 8..184 160 28.2 Plus
Dwil\GK19717-PA 339 GK19717-PA 15..192 8..191 157 29.8 Plus
Dwil\GK16445-PA 373 GK16445-PA 120..282 5..174 155 29.9 Plus
Dwil\GK14865-PA 725 GK14865-PA 123..287 8..174 152 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14719-PA 338 GE14719-PA 1..338 1..336 1707 95.9 Plus
Dyak\GE17544-PA 335 GE17544-PA 86..246 7..174 156 30.2 Plus
Dyak\GE18193-PA 446 GE18193-PA 114..278 8..174 155 27.8 Plus
Dyak\GE16738-PA 339 GE16738-PA 15..192 8..191 152 29.3 Plus
Dyak\GE11925-PA 634 GE11925-PA 4..172 8..184 149 27.5 Plus

RE72132.hyp Sequence

Translation from 89 to 1099

> RE72132.hyp
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVF*

RE72132.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 336 CG15440-PA 1..336 1..336 1779 100 Plus
Rbp9-PH 439 CG3151-PH 117..309 13..207 153 28.4 Plus
Rbp9-PG 439 CG3151-PG 117..309 13..207 153 28.4 Plus
Rbp9-PF 439 CG3151-PF 117..309 13..207 153 28.4 Plus
Rbp9-PE 439 CG3151-PE 117..309 13..207 153 28.4 Plus