Clone RE72284 Report

Search the DGRC for RE72284

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:722
Well:84
Vector:pFlc-1
Associated Gene/Transcriptdanr-RA
Protein status:RE72284.pep: gold
Preliminary Size:1260
Sequenced Size:1843

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13651 2002-01-01 Sim4 clustering to Release 2
CG13651 2002-02-27 Blastp of sequenced clone
CG13651 2003-01-01 Sim4 clustering to Release 3
danr 2008-04-29 Release 5.5 accounting
danr 2008-08-15 Release 5.9 accounting
danr 2008-12-18 5.12 accounting

Clone Sequence Records

RE72284.complete Sequence

1843 bp (1843 high quality bases) assembled on 2002-02-27

GenBank Submission: AY084187

> RE72284.complete
GCAGTTCGCAGCTCGCCTTTCGCGGAATCGGATTCACAATCACATCCTTC
TGCGAGTTCGAGGAGTGCACACCGGTGGTCGCATCCGCAAAGTCCGCGCT
TCGAAACCGCTATCGTAATCGCAATCGCTATCGCCAGCGCAACCAGAAAT
AGAACCATGGATATCTCCGCCTACCAGCACATGAACATCCGGATGAGCAC
GCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGACAAGGTGCGTG
CCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGTGTCGCGGGAC
ATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGAACGAGCAGAA
GCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTGGGTCTCGACA
CGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCAGCTGCCACCG
AAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCTTCGGTGCACT
GCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCCCTGCTGGAGA
AGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATTGCATCCGGAG
GGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACTCCAACAACAT
GCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAACTCACCCCAC
AGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGAGGACAACAAA
GTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAAACAATTACCC
CTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAGCGGGTGAACT
CCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAATGCCCTGGAG
GCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGGCGAAGACTCC
CATGTTCTCGGACACCACAATGCCCCTACTGCCAGCACCCTTCCCGAATC
CTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCGGCAAACGCCCCG
CCCACTGGAACCGATAACCAGGGAGCGGCTCTGCTCGACTGGTGCAAGCT
CTTCAATGCCAGTTTGAACTTCCTGGCCTTCGCTGCGGCCGCAGCCTCCA
TGCAGCCCGGCGGCGGAGGACCAGGTGGACCCAGCTACAATCCCAACCAA
ATGGCCAGCGGCGGATCGGAGCCGGATCTCGAAACATATCCTTTCAACGA
GGCGCTACTAAAGCGACTGAGTCCACTGGCGCACAGTGAGGCCTCCAACG
AAAGCTACTGCGACAGCGAGCCGGAGGATCTGTCCGTGCGCTCCTGCGCC
TCCAAGGCGTCCAGCAGATCCCACACTCCCGACAAGAGCGTCGGGTCCAG
CGACGCCGAACAGTAGACACCCTACATTATAGCATAGTTGTAGTTGTAGT
TCATAGTGTAAATACATCCATTTTTATTGTTATTAGCCACCTTTAGTATT
AATGAAACTCGAATCATTTCGCAATGCAAATGCCATTTGTACTTATCAAT
TAACGTATTAATATCACTGCAACAGGTATTAATAGCTCAGCATACTATAG
CTAGTATTAACTAGGAATATCAACTGTGTGACTACTTGTTTGAAAGCCAA
ATTCAATTCATCTACACGTATTATAACAAATACTAATTGTGTTAAGTAGC
TTAATTAGTTGGCACATTTTGTCAGCCATTCCAATCGATTTGTTTTATTA
CTGTGTAATCTGCGTAACTCTCAAATAAGCATATAAACTAATTACTAATG
AAACGAATAAATATTTATTAACAAAACAAAAAAAAAAAAAAAA

RE72284.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
danr-RA 1827 danr-RA 1..1827 1..1827 9135 100 Plus
dan.a 2990 dan.a 100..314 158..372 475 81.3 Plus
dan.b 3667 dan.b 777..991 158..372 475 81.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20961216..20963042 1..1827 9090 99.8 Plus
chr3R 27901430 chr3R 21012997..21013211 158..372 475 81.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25138077..25139912 1..1836 9165 99.9 Plus
3R 32079331 3R 25189916..25190130 158..372 475 81.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24878908..24880743 1..1836 9165 99.9 Plus
3R 31820162 3R 24930747..24930961 158..372 475 81.3 Plus
Blast to na_te.dros performed on 2019-03-16 00:01:54 has no hits.

RE72284.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:42 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20961216..20963042 1..1827 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:59 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 157..1416 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:36 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 157..1416 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:39 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 157..1416 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:26 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 157..1416 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:02 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 157..1416 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:32 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1827 1..1827 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:36 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1827 1..1827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:39 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1827 1..1827 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:26 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1827 1..1827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:02 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 6..1832 1..1827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:42 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25138077..25139903 1..1827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:42 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25138077..25139903 1..1827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:42 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25138077..25139903 1..1827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:39 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20963799..20965625 1..1827 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:39:13 Download gff for RE72284.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24878908..24880734 1..1827 100   Plus

RE72284.hyp Sequence

Translation from 0 to 1415

> RE72284.hyp
AVRSSPFAESDSQSHPSASSRSAHRWSHPQSPRFETAIVIAIAIASATRN
RTMDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRD
IGVPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPP
KFVALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPE
GALHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNK
VIDSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALE
ANSSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAP
PTGTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQ
MASGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCA
SKASSRSHTPDKSVGSSDAEQ*

RE72284.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
danr-PA 419 CG13651-PA 1..419 53..471 2198 100 Plus
dan-PC 678 CG11849-PC 1..500 61..460 406 30.8 Plus
dan-PA 678 CG11849-PA 1..500 61..460 406 30.8 Plus
dan-PB 781 CG11849-PB 1..500 61..460 406 30.8 Plus
CG30401-PC 275 CG30401-PC 8..59 68..118 156 61.5 Plus

RE72284.pep Sequence

Translation from 156 to 1415

> RE72284.pep
MDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRDIG
VPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPPKF
VALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPEGA
LHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNKVI
DSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALEAN
SSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAPPT
GTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQMA
SGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCASK
ASSRSHTPDKSVGSSDAEQ*

RE72284.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17893-PA 420 GF17893-PA 1..420 1..419 1347 75.9 Plus
Dana\GF17896-PA 831 GF17896-PA 31..190 1..146 377 51.5 Plus
Dana\GF11604-PA 273 GF11604-PA 8..59 16..66 164 59.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11367-PA 419 GG11367-PA 1..419 1..419 2156 96.7 Plus
Dere\GG11370-PA 721 GG11370-PA 36..444 1..323 416 34.1 Plus
Dere\GG20731-PA 264 GG20731-PA 8..59 16..66 163 61.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18050-PA 412 GH18050-PA 1..412 1..419 896 52.3 Plus
Dgri\GH18053-PA 687 GH18053-PA 1..138 9..122 325 49.7 Plus
Dgri\GH21351-PA 214 GH21351-PA 8..53 16..61 154 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
danr-PA 419 CG13651-PA 1..419 1..419 2198 100 Plus
dan-PC 678 CG11849-PC 1..500 9..408 406 30.8 Plus
dan-PA 678 CG11849-PA 1..500 9..408 406 30.8 Plus
dan-PB 781 CG11849-PB 1..500 9..408 406 30.8 Plus
dany-PC 275 CG30401-PC 8..59 16..66 156 61.5 Plus
dany-PA 275 CG30401-PA 8..59 16..66 156 61.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23730-PA 430 GI23730-PA 1..430 1..419 951 55.3 Plus
Dmoj\GI23731-PA 769 GI23731-PA 55..456 1..323 424 34.8 Plus
Dmoj\GI20766-PA 247 GI20766-PA 8..54 16..62 165 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21906-PA 429 GL21906-PA 1..422 1..417 1137 61.7 Plus
Dper\GL21909-PA 684 GL21909-PA 1..456 9..382 415 33.1 Plus
Dper\GL17502-PA 251 GL17502-PA 8..57 16..65 152 56 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12437-PA 432 GA12437-PA 1..425 1..417 1102 61.4 Plus
Dpse\GA11234-PA 683 GA11234-PA 1..455 9..382 416 33.2 Plus
Dpse\GA30448-PA 251 GA30448-PA 8..57 16..65 152 56 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17808-PA 495 GM17808-PA 77..495 1..419 1938 95.5 Plus
Dsec\GM17814-PA 762 GM17814-PA 35..419 1..323 413 34.5 Plus
Dsec\GM15674-PA 158 GM15674-PA 8..59 16..66 160 59.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21179-PA 495 GD21179-PA 77..495 1..419 2129 96.4 Plus
Dsim\GD21183-PA 713 GD21183-PA 26..435 1..323 413 34.1 Plus
Dsim\GD25155-PA 275 GD25155-PA 8..59 16..66 163 59.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23601-PA 418 GJ23601-PA 1..404 1..410 897 54.4 Plus
Dvir\GJ23602-PA 696 GJ23602-PA 1..394 9..323 384 34.1 Plus
Dvir\GJ17111-PA 101 GJ17111-PA 8..64 16..74 165 55.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13890-PA 443 GK13890-PA 1..443 1..419 1084 59.4 Plus
Dwil\GK13892-PA 810 GK13892-PA 26..437 1..323 427 34 Plus
Dwil\GK15635-PA 215 GK15635-PA 8..59 16..66 169 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23564-PA 422 GE23564-PA 1..422 1..419 1932 94.1 Plus
Dyak\GE23568-PA 809 GE23568-PA 47..461 1..323 417 34 Plus
Dyak\GE13663-PA 276 GE13663-PA 8..59 16..66 163 59.6 Plus