BDGP Sequence Production Resources |
Search the DGRC for RE72284
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 722 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | danr-RA |
Protein status: | RE72284.pep: gold |
Preliminary Size: | 1260 |
Sequenced Size: | 1843 |
Gene | Date | Evidence |
---|---|---|
CG13651 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13651 | 2002-02-27 | Blastp of sequenced clone |
CG13651 | 2003-01-01 | Sim4 clustering to Release 3 |
danr | 2008-04-29 | Release 5.5 accounting |
danr | 2008-08-15 | Release 5.9 accounting |
danr | 2008-12-18 | 5.12 accounting |
1843 bp (1843 high quality bases) assembled on 2002-02-27
GenBank Submission: AY084187
> RE72284.complete GCAGTTCGCAGCTCGCCTTTCGCGGAATCGGATTCACAATCACATCCTTC TGCGAGTTCGAGGAGTGCACACCGGTGGTCGCATCCGCAAAGTCCGCGCT TCGAAACCGCTATCGTAATCGCAATCGCTATCGCCAGCGCAACCAGAAAT AGAACCATGGATATCTCCGCCTACCAGCACATGAACATCCGGATGAGCAC GCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGACAAGGTGCGTG CCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGTGTCGCGGGAC ATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGAACGAGCAGAA GCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTGGGTCTCGACA CGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCAGCTGCCACCG AAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCTTCGGTGCACT GCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCCCTGCTGGAGA AGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATTGCATCCGGAG GGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACTCCAACAACAT GCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAACTCACCCCAC AGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGAGGACAACAAA GTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAAACAATTACCC CTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAGCGGGTGAACT CCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAATGCCCTGGAG GCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGGCGAAGACTCC CATGTTCTCGGACACCACAATGCCCCTACTGCCAGCACCCTTCCCGAATC CTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCGGCAAACGCCCCG CCCACTGGAACCGATAACCAGGGAGCGGCTCTGCTCGACTGGTGCAAGCT CTTCAATGCCAGTTTGAACTTCCTGGCCTTCGCTGCGGCCGCAGCCTCCA TGCAGCCCGGCGGCGGAGGACCAGGTGGACCCAGCTACAATCCCAACCAA ATGGCCAGCGGCGGATCGGAGCCGGATCTCGAAACATATCCTTTCAACGA GGCGCTACTAAAGCGACTGAGTCCACTGGCGCACAGTGAGGCCTCCAACG AAAGCTACTGCGACAGCGAGCCGGAGGATCTGTCCGTGCGCTCCTGCGCC TCCAAGGCGTCCAGCAGATCCCACACTCCCGACAAGAGCGTCGGGTCCAG CGACGCCGAACAGTAGACACCCTACATTATAGCATAGTTGTAGTTGTAGT TCATAGTGTAAATACATCCATTTTTATTGTTATTAGCCACCTTTAGTATT AATGAAACTCGAATCATTTCGCAATGCAAATGCCATTTGTACTTATCAAT TAACGTATTAATATCACTGCAACAGGTATTAATAGCTCAGCATACTATAG CTAGTATTAACTAGGAATATCAACTGTGTGACTACTTGTTTGAAAGCCAA ATTCAATTCATCTACACGTATTATAACAAATACTAATTGTGTTAAGTAGC TTAATTAGTTGGCACATTTTGTCAGCCATTCCAATCGATTTGTTTTATTA CTGTGTAATCTGCGTAACTCTCAAATAAGCATATAAACTAATTACTAATG AAACGAATAAATATTTATTAACAAAACAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20961216..20963042 | 1..1827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1260 | 157..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1260 | 157..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1260 | 157..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1260 | 157..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1260 | 157..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1827 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1827 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1827 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 1..1827 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
danr-RA | 6..1832 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25138077..25139903 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25138077..25139903 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25138077..25139903 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20963799..20965625 | 1..1827 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24878908..24880734 | 1..1827 | 100 | Plus |
Translation from 0 to 1415
> RE72284.hyp AVRSSPFAESDSQSHPSASSRSAHRWSHPQSPRFETAIVIAIAIASATRN RTMDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRD IGVPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPP KFVALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPE GALHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNK VIDSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALE ANSSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAP PTGTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQ MASGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCA SKASSRSHTPDKSVGSSDAEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
danr-PA | 419 | CG13651-PA | 1..419 | 53..471 | 2198 | 100 | Plus |
dan-PC | 678 | CG11849-PC | 1..500 | 61..460 | 406 | 30.8 | Plus |
dan-PA | 678 | CG11849-PA | 1..500 | 61..460 | 406 | 30.8 | Plus |
dan-PB | 781 | CG11849-PB | 1..500 | 61..460 | 406 | 30.8 | Plus |
CG30401-PC | 275 | CG30401-PC | 8..59 | 68..118 | 156 | 61.5 | Plus |
Translation from 156 to 1415
> RE72284.pep MDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRDIG VPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPPKF VALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPEGA LHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNKVI DSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALEAN SSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAPPT GTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQMA SGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCASK ASSRSHTPDKSVGSSDAEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17893-PA | 420 | GF17893-PA | 1..420 | 1..419 | 1347 | 75.9 | Plus |
Dana\GF17896-PA | 831 | GF17896-PA | 31..190 | 1..146 | 377 | 51.5 | Plus |
Dana\GF11604-PA | 273 | GF11604-PA | 8..59 | 16..66 | 164 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11367-PA | 419 | GG11367-PA | 1..419 | 1..419 | 2156 | 96.7 | Plus |
Dere\GG11370-PA | 721 | GG11370-PA | 36..444 | 1..323 | 416 | 34.1 | Plus |
Dere\GG20731-PA | 264 | GG20731-PA | 8..59 | 16..66 | 163 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18050-PA | 412 | GH18050-PA | 1..412 | 1..419 | 896 | 52.3 | Plus |
Dgri\GH18053-PA | 687 | GH18053-PA | 1..138 | 9..122 | 325 | 49.7 | Plus |
Dgri\GH21351-PA | 214 | GH21351-PA | 8..53 | 16..61 | 154 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
danr-PA | 419 | CG13651-PA | 1..419 | 1..419 | 2198 | 100 | Plus |
dan-PC | 678 | CG11849-PC | 1..500 | 9..408 | 406 | 30.8 | Plus |
dan-PA | 678 | CG11849-PA | 1..500 | 9..408 | 406 | 30.8 | Plus |
dan-PB | 781 | CG11849-PB | 1..500 | 9..408 | 406 | 30.8 | Plus |
dany-PC | 275 | CG30401-PC | 8..59 | 16..66 | 156 | 61.5 | Plus |
dany-PA | 275 | CG30401-PA | 8..59 | 16..66 | 156 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23730-PA | 430 | GI23730-PA | 1..430 | 1..419 | 951 | 55.3 | Plus |
Dmoj\GI23731-PA | 769 | GI23731-PA | 55..456 | 1..323 | 424 | 34.8 | Plus |
Dmoj\GI20766-PA | 247 | GI20766-PA | 8..54 | 16..62 | 165 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21906-PA | 429 | GL21906-PA | 1..422 | 1..417 | 1137 | 61.7 | Plus |
Dper\GL21909-PA | 684 | GL21909-PA | 1..456 | 9..382 | 415 | 33.1 | Plus |
Dper\GL17502-PA | 251 | GL17502-PA | 8..57 | 16..65 | 152 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12437-PA | 432 | GA12437-PA | 1..425 | 1..417 | 1102 | 61.4 | Plus |
Dpse\GA11234-PA | 683 | GA11234-PA | 1..455 | 9..382 | 416 | 33.2 | Plus |
Dpse\GA30448-PA | 251 | GA30448-PA | 8..57 | 16..65 | 152 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17808-PA | 495 | GM17808-PA | 77..495 | 1..419 | 1938 | 95.5 | Plus |
Dsec\GM17814-PA | 762 | GM17814-PA | 35..419 | 1..323 | 413 | 34.5 | Plus |
Dsec\GM15674-PA | 158 | GM15674-PA | 8..59 | 16..66 | 160 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21179-PA | 495 | GD21179-PA | 77..495 | 1..419 | 2129 | 96.4 | Plus |
Dsim\GD21183-PA | 713 | GD21183-PA | 26..435 | 1..323 | 413 | 34.1 | Plus |
Dsim\GD25155-PA | 275 | GD25155-PA | 8..59 | 16..66 | 163 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23601-PA | 418 | GJ23601-PA | 1..404 | 1..410 | 897 | 54.4 | Plus |
Dvir\GJ23602-PA | 696 | GJ23602-PA | 1..394 | 9..323 | 384 | 34.1 | Plus |
Dvir\GJ17111-PA | 101 | GJ17111-PA | 8..64 | 16..74 | 165 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13890-PA | 443 | GK13890-PA | 1..443 | 1..419 | 1084 | 59.4 | Plus |
Dwil\GK13892-PA | 810 | GK13892-PA | 26..437 | 1..323 | 427 | 34 | Plus |
Dwil\GK15635-PA | 215 | GK15635-PA | 8..59 | 16..66 | 169 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23564-PA | 422 | GE23564-PA | 1..422 | 1..419 | 1932 | 94.1 | Plus |
Dyak\GE23568-PA | 809 | GE23568-PA | 47..461 | 1..323 | 417 | 34 | Plus |
Dyak\GE13663-PA | 276 | GE13663-PA | 8..59 | 16..66 | 163 | 59.6 | Plus |