BDGP Sequence Production Resources |
Search the DGRC for RE72348
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 723 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(2)05714-RB |
Protein status: | RE72348.pep: gold |
Sequenced Size: | 979 |
Gene | Date | Evidence |
---|---|---|
l(2)05714-RB | 2010-11-11 | Gleaning Pick By Joe Carlson |
979 bp assembled on 2010-12-06
GenBank Submission: BT125806.1
> RE72348.complete GCTTTTGGCGCTCATCTTTCAAAGAATACTTTTCCACAAATCAGACAAGC TTCATCCGAAAGCGGGCACAATGCTGAAGGGTTACAAGACGGATGAGGAC AAGAAGGTGAAGCGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAA ATATCCGGAGCTCTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGG CGCACTGCAAGATCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATC AAGCAGCACCTCGCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAA CATTCTTGCCAAGAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATG ACCCAGACTTGGAGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCC AAATCAAAGACCTATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAA GATCAAGAACGACACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGG ACGAAATCGCCTCGAACGACTCAATCCTGGATGATTTACTCAGAACAGAT CAGCCCTATCAAGAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGT ACAACAGAATGAAACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAG AGATGATACAGCTCAAGCCGGAAGATACGGAGATTAATAACGAATACCAA GTCGACGCGATGACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGG CAAGAGTTTGGCTCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAA TGTGCCAGGAGCGTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTG CTCAAGCGCAAGAGAGAGCAAGCACGATCTTCGTAGGCTTACAATTTATA TCAAGCTGTCTTATGTACATAATATAATTTCTTTAACAACTAAATAAATA ACTATTCTGCCGCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4969235..4969884 | 314..963 | 99 | <- | Minus |
chr2L | 4970154..4970466 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 1..816 | 71..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 1..816 | 71..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 1..816 | 71..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 88..1050 | 1..963 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 88..1050 | 1..963 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)05714-RB | 120..1082 | 1..963 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4970135..4970784 | 314..963 | 99 | <- | Minus |
2L | 4971054..4971366 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4970135..4970784 | 314..963 | 99 | <- | Minus |
2L | 4971054..4971366 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4970135..4970784 | 314..963 | 99 | <- | Minus |
2L | 4971054..4971366 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4970135..4970784 | 314..963 | 99 | <- | Minus |
arm_2L | 4971054..4971366 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4970135..4970784 | 314..963 | 99 | <- | Minus |
2L | 4971054..4971366 | 1..313 | 100 | Minus |
Translation from 0 to 885
> RE72348.hyp LLALIFQRILFHKSDKLHPKAGTMLKGYKTDEDKKVKRLYHQRYRTEWEK YPELSSWLASSNDGYSAHCKICDINVLARLASIKQHLATRKHQESFKYHN ILAKNMIKGELVKDEHDPDLEASIISPKAKPKAKSKTYPRQKPRSKMQPK IKNDTKVESMEEETEEDEIASNDSILDDLLRTDQPYQEQEFEVENEFLEV QQNETDLQDQEVVYEEEMIQLKPEDTEINNEYQVDAMTEDTIISEFDLFG KSLALQLNNMDLEDALMCQERLQVVLTEFRLKVLKRKREQARSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)05714-PB | 271 | CG8886-PB | 1..271 | 24..294 | 1394 | 100 | Plus |
l(2)05714-PC | 260 | CG8886-PC | 1..260 | 24..294 | 1314 | 95.9 | Plus |
l(2)05714-PA | 260 | CG8886-PA | 1..260 | 24..294 | 1314 | 95.9 | Plus |
Translation from 1 to 885
> RE72348.pep LLALIFQRILFHKSDKLHPKAGTMLKGYKTDEDKKVKRLYHQRYRTEWEK YPELSSWLASSNDGYSAHCKICDINVLARLASIKQHLATRKHQESFKYHN ILAKNMIKGELVKDEHDPDLEASIISPKAKPKAKSKTYPRQKPRSKMQPK IKNDTKVESMEEETEEDEIASNDSILDDLLRTDQPYQEQEFEVENEFLEV QQNETDLQDQEVVYEEEMIQLKPEDTEINNEYQVDAMTEDTIISEFDLFG KSLALQLNNMDLEDALMCQERLQVVLTEFRLKVLKRKREQARSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23624-PA | 255 | GF23624-PA | 14..254 | 33..293 | 588 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24333-PA | 269 | GG24333-PA | 1..269 | 24..294 | 1085 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10242-PA | 219 | GH10242-PA | 3..214 | 35..287 | 484 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)05714-PB | 271 | CG8886-PB | 1..271 | 24..294 | 1394 | 100 | Plus |
l(2)05714-PC | 260 | CG8886-PC | 1..260 | 24..294 | 1314 | 95.9 | Plus |
l(2)05714-PA | 260 | CG8886-PA | 1..260 | 24..294 | 1314 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15353-PA | 231 | GI15353-PA | 3..226 | 35..287 | 530 | 47.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20681-PA | 252 | GL20681-PA | 1..252 | 25..294 | 515 | 48.1 | Plus |
Dper\GL20529-PA | 89 | GL20529-PA | 1..84 | 25..103 | 261 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21390-PA | 252 | GA21390-PA | 1..252 | 25..294 | 519 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18053-PA | 272 | GM18053-PA | 1..272 | 24..294 | 1160 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22673-PA | 275 | GD22673-PA | 1..275 | 24..294 | 1188 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17273-PA | 227 | GJ17273-PA | 3..222 | 35..287 | 510 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24477-PA | 365 | GK24477-PA | 128..361 | 43..289 | 356 | 35.8 | Plus |
Dwil\GK24477-PA | 365 | GK24477-PA | 9..81 | 30..102 | 245 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18712-PA | 272 | GE18712-PA | 1..272 | 24..294 | 1075 | 82.8 | Plus |