Clone RE72485 Report

Search the DGRC for RE72485

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:724
Well:85
Vector:pFlc-1
Associated Gene/TranscriptCG32335-RB
Protein status:RE72485.pep: gold
Sequenced Size:1093

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9120 2002-01-01 Sim4 clustering to Release 2
CG32335 2002-02-26 Blastp of sequenced clone
CG32335 2008-04-29 Release 5.5 accounting
CG32335 2008-08-15 Release 5.9 accounting
CG32335 2008-12-18 5.12 accounting

Clone Sequence Records

RE72485.complete Sequence

1093 bp (1093 high quality bases) assembled on 2002-02-26

GenBank Submission: AY084189

> RE72485.complete
GGTCGCTAGTTTACCTCCAGCAAGGAAAGGCCCTGAACCCGTACCGAAAT
ATTTGCAGAGATACCATGAACGGGAGTCACCTTCAAACGGAGCAGTTGCT
CTTTGAGGAGAGGCCACTCCATGTGCCGCCCCTCTCGGAACTGAAAAGAG
TCATACAGGGTGCTCTGGATGAGAACTTTCGGACCGTAGATGTCAGTGTG
GAAGCTTGCCCGGATTTAAGGGACTCCCAGTTTGGCCTTGTGGAGCGTGG
ACTGGGCGGAAAGGCCACTCTCCTAGAAGCAGGAGGGCCACCCTATTTGC
GGCCCTTGGTGCAGCGAGATAAGCTCTACAATCTGAAGGAGATCACTCGG
CGGACCCAAGGAGCAGGAAAGATCTTTGCAGTTGGACCGGGAGCAGGTCC
GTGGCCCATTCGTCACTCCAATTGCGAGGGGATCTTTAATTTCTCGCTAA
ACGAAGAGGATGAACTCACTCAAGGAAGCTACACGGCCACTGTGAGGGGA
GCGAATGAGGATTGTGTTCTCGAAAGGATTCCCGAAACCGAATCTCGTGC
TGCTCTGATCCTGAACCTCTTCCTCAGCGAGGGAAAACCAGGTCAAGTGC
TCCGAATTTCCGCAAAACAGCGCACTGGAGGGGAAAACTTTGTAGAATGC
ATTCGCAAGGGTCTGGAACGGCACTACGGAGACCAGGTGGTGGGCTTGGG
AGGAATGTTCGTGGTCAGGAGGGGATGTGTCCACCAGCACGTAATGCGAG
ATTTTAGCAAGACGCCCATCCACACACAGGAACAGATCCAAAACTGGTTG
AAGTTCTACGAAATGCCCGCCCAGCTAAACGCAGTGGGCACCTTGGTGAC
CAAGGACATGGGACTGGACCTCCGCCTGCAGCACTTCCACTCGTTTTCCT
TTGCAAACTGGGGAGGCCACTATCACTACGACACCACGCCGGACATTGTG
GAGTACGAGGCCTATCTGAACGTGGCCGAAAGAGTGATCCGTGTGGACAG
ACCCGTGGCGACCGATCAGTTGGGCAGAGATTGATCTTCATCTGCTCATT
TGTTCCTGCCAAAAATAAACGTCTTCGAAAAAAAAAAAAAAAA

RE72485.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32335-RB 1211 CG32335-RB 115..1196 2..1083 5395 99.9 Plus
CG9119-RA 1374 CG9119-RA 981..1189 801..1009 520 83.2 Plus
CG9119-RA 1374 CG9119-RA 744..954 564..774 320 76.7 Plus
CG9119-RA 1374 CG9119-RA 370..511 190..331 290 80.2 Plus
CG9119-RA 1374 CG9119-RA 570..713 390..533 225 77 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1201397..1202325 1077..149 4510 99 Minus
chr3L 24539361 chr3L 1202950..1203769 1009..190 1070 75.4 Minus
chr3L 24539361 chr3L 1202408..1202556 150..2 730 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1201865..1202799 1083..149 4660 99.9 Minus
3L 28110227 3L 1203428..1204247 1009..190 1115 75.7 Minus
3L 28110227 3L 1202882..1203030 150..2 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1201865..1202799 1083..149 4660 99.8 Minus
3L 28103327 3L 1202882..1203030 150..2 745 100 Minus
3L 28103327 3L 1203428..1203573 1009..864 370 83.5 Minus
3L 28103327 3L 1203663..1203873 774..564 320 76.7 Minus
3L 28103327 3L 1204106..1204247 331..190 290 80.2 Minus
3L 28103327 3L 1203904..1204047 533..390 225 77 Minus
3L 28103327 3L 1203581..1203636 856..801 205 91 Minus
Blast to na_te.dros performed on 2019-03-16 12:59:40 has no hits.

RE72485.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:00:32 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1201397..1202323 151..1077 99 <- Minus
chr3L 1202408..1202556 1..150 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:03 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..969 66..1034 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:33:55 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..969 66..1034 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:03:26 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..969 66..1034 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:14 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..969 66..1034 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:51 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..969 66..1034 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:59:43 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..1071 2..1072 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:33:55 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..1076 2..1077 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:03:26 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 6..1082 1..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:14 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 1..1071 2..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:51 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
CG32335-RB 6..1082 1..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:32 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1201871..1202797 151..1077 100 <- Minus
3L 1202882..1203030 1..150 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:32 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1201871..1202797 151..1077 100 <- Minus
3L 1202882..1203030 1..150 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:32 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1201871..1202797 151..1077 100 <- Minus
3L 1202882..1203030 1..150 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:03:26 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1202882..1203030 1..150 99   Minus
arm_3L 1201871..1202797 151..1077 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:03 Download gff for RE72485.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1201871..1202797 151..1077 100 <- Minus
3L 1202882..1203030 1..150 99   Minus

RE72485.hyp Sequence

Translation from 2 to 1033

> RE72485.hyp
SLVYLQQGKALNPYRNICRDTMNGSHLQTEQLLFEERPLHVPPLSELKRV
IQGALDENFRTVDVSVEACPDLRDSQFGLVERGLGGKATLLEAGGPPYLR
PLVQRDKLYNLKEITRRTQGAGKIFAVGPGAGPWPIRHSNCEGIFNFSLN
EEDELTQGSYTATVRGANEDCVLERIPETESRAALILNLFLSEGKPGQVL
RISAKQRTGGENFVECIRKGLERHYGDQVVGLGGMFVVRRGCVHQHVMRD
FSKTPIHTQEQIQNWLKFYEMPAQLNAVGTLVTKDMGLDLRLQHFHSFSF
ANWGGHYHYDTTPDIVEYEAYLNVAERVIRVDRPVATDQLGRD*

RE72485.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32335-PB 322 CG32335-PB 1..322 22..343 1702 100 Plus
CG9119-PA 322 CG9119-PA 1..322 22..343 1350 76.7 Plus

RE72485.pep Sequence

Translation from 2 to 1033

> RE72485.pep
SLVYLQQGKALNPYRNICRDTMNGSHLQTEQLLFEERPLHVPPLSELKRV
IQGALDENFRTVDVSVEACPDLRDSQFGLVERGLGGKATLLEAGGPPYLR
PLVQRDKLYNLKEITRRTQGAGKIFAVGPGAGPWPIRHSNCEGIFNFSLN
EEDELTQGSYTATVRGANEDCVLERIPETESRAALILNLFLSEGKPGQVL
RISAKQRTGGENFVECIRKGLERHYGDQVVGLGGMFVVRRGCVHQHVMRD
FSKTPIHTQEQIQNWLKFYEMPAQLNAVGTLVTKDMGLDLRLQHFHSFSF
ANWGGHYHYDTTPDIVEYEAYLNVAERVIRVDRPVATDQLGRD*

RE72485.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10075-PA 335 GF10075-PA 1..319 22..340 1381 78.4 Plus
Dana\GF10074-PA 648 GF10074-PA 5..319 25..339 1333 76.2 Plus
Dana\GF10074-PA 648 GF10074-PA 336..646 25..335 1262 72.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14619-PA 322 GG14619-PA 1..322 22..343 1601 91.9 Plus
Dere\GG14618-PA 322 GG14618-PA 1..322 22..343 1378 77 Plus
Dere\GG19819-PA 115 GG19819-PA 1..115 22..136 418 69.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15990-PA 324 GH15990-PA 5..324 25..343 1279 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32335-PB 322 CG32335-PB 1..322 22..343 1702 100 Plus
CG9119-PA 322 CG9119-PA 1..322 22..343 1350 76.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16644-PA 322 GI16644-PA 1..322 22..343 1327 74.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16084-PA 221 GL16084-PA 27..221 149..343 786 71.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21557-PA 326 GA21557-PA 8..326 25..343 1336 75.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14231-PA 322 GM14231-PA 1..322 22..343 1650 95.7 Plus
Dsec\GM14230-PA 322 GM14230-PA 1..322 22..343 1388 77.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13492-PA 322 GD13492-PA 1..322 22..343 1681 97.2 Plus
Dsim\GD13491-PA 322 GD13491-PA 1..322 22..343 1369 76.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12897-PA 326 GJ12897-PA 10..326 27..343 1305 74.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12347-PA 322 GK12347-PA 1..322 22..343 1390 77.6 Plus
Dwil\GK12404-PA 323 GK12404-PA 1..314 22..334 1261 72.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20980-PA 322 GE20980-PA 1..322 22..343 1636 94.1 Plus
Dyak\GE20978-PA 322 GE20978-PA 1..322 22..343 1388 77.6 Plus