Clone RE72529 Report

Search the DGRC for RE72529

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:725
Well:29
Vector:pFlc-1
Associated Gene/TranscriptAda1-2-RA
Protein status:RE72529.pep: gold
Sequenced Size:1094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31866 2003-01-01 Sim4 clustering to Release 3
CG31866 2004-10-25 Blastp of sequenced clone
CG31866 2008-04-29 Release 5.5 accounting
Ada1-2 2008-08-15 Release 5.9 accounting
Ada1-2 2008-12-18 5.12 accounting

Clone Sequence Records

RE72529.complete Sequence

1094 bp (1094 high quality bases) assembled on 2004-10-25

GenBank Submission: BT015976

> RE72529.complete
TGACTCGAATCAGCTGCATTCATTTGTTTATATAGCAATTCGCAAACAGT
TGGATTTTCCTGTTTAGTTGTTATTCCCATTACTAAAATGCTTACCGACA
GAGTTCTGGCCACCAAGGAGGCGCTAGTGGTGGCTCTGGGCGACAACTGG
GAGCGTTACCGGGCCAACATGAAGAATTGGTTTCGGAGCCGTTGGACTAA
GGAGGAATTCGATGCGGAGTCGCGGAAAATCCTAACACCTGACAAACTGC
ACCTGCACAATCAGTTCCTGCTCGCCCTGCTCAACAAGATCGACGCCTTT
GCTCCCCTGGAGAATCCTCCGGCCGTCCAGACCAGCAGCAGTAGTGGCAA
CCGAAGCAAACGGCGCAAAAGAAGTTCCCGCACCTTCGCCGAACGCCTTA
ATTTTGAGCTCAGCGACGTCCTGGACTTTGTAGCCGAGGACAACATGCAA
ATCATTCGTCCGCCAACCACGATCGGTATTCCGTCGGACCAGCAACAGCA
ACAGCTTCAGTCGCAGCGGTACTGCGCGCAGGAACTTTTCCTGCCCGACG
CGGGATTCATTATGGGACGATTTCTGATCGGTGCCTGGGAAATCGGACTT
GTCTCCGTGGACGACAATGTCGCCGAGTACGTTGCCATGGCCGTGCAAGT
TCTGCTCAAGGATCTACTATCGGCAATCATCAAGAAACGAAAGCACTACA
AGACCAGCGGCGAGGGAAACTTTTACTACGATGTAGGTGCTCCGTTGCGT
GATCCTTCGCTGCGCAACACCGTCACCCGGCAGAAGGTCGACGACACGCC
GCTGGAACTGGACAAGGAACTGAATACGGCCAACTTTATGCGGCGACAGA
ACGACGATGTGACCTTCCTCTCCGCCTGCGAAGAAGTCCAACCCACCGAA
CGCACAGTAATCACCCTCAAGGACTGCCAACTGGCCTTACGGGATCGCAA
CCTGATAGGCTCGCATGCCGTCTACTCTATAAACATGGAACGACTCAATA
TGATGATGCATTAGCTTATAAGTTCTAATTATTTTATTATATCAGCTTCT
GTAAAAATATATACATTATACGCTAGTGAAAAAAAAAAAAAAAA

RE72529.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ada1-2-RA 1091 Ada1-2-RA 9..1084 3..1078 5380 100 Plus
Ada1-1-RA 1093 Ada1-1-RA 9..1084 3..1078 5335 99.7 Plus
CG18787-RA 1587 CG18787-RA 1524..1587 1078..1015 320 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11991561..11992445 3..887 4425 100 Plus
chr2L 23010047 chr2L 11995481..11996365 3..887 4395 99.8 Plus
chr2L 23010047 chr2L 11992510..11992700 888..1078 955 100 Plus
chr2L 23010047 chr2L 11996430..11996620 888..1078 940 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11992908..11993792 3..887 4425 100 Plus
2L 23513712 2L 11996819..11997703 3..887 4395 99.8 Plus
2L 23513712 2L 11993857..11994047 888..1078 955 100 Plus
2L 23513712 2L 11997768..11997958 888..1078 940 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11992908..11993792 3..887 4425 100 Plus
2L 23513712 2L 11996819..11997703 3..887 4395 99.7 Plus
2L 23513712 2L 11993857..11994047 888..1078 955 100 Plus
2L 23513712 2L 11997768..11997958 888..1078 940 99.4 Plus
Blast to na_te.dros performed 2019-03-16 14:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 6601..6633 225..257 111 81.8 Plus

RE72529.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:14:46 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11991559..11992445 1..887 99 -> Plus
chr2L 11992510..11992700 888..1078 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:04 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..927 88..1014 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:29:02 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..927 88..1014 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:36:00 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..927 88..1014 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:13:00 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..927 88..1014 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:11 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..927 88..1014 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:47 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:29:02 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:00 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 5..1082 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:13:00 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:11 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
Ada1-2-RA 5..1082 1..1078 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:46 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11993857..11994047 888..1078 100   Plus
2L 11992906..11993792 1..887 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:46 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11993857..11994047 888..1078 100   Plus
2L 11992906..11993792 1..887 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:46 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11993857..11994047 888..1078 100   Plus
2L 11992906..11993792 1..887 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:00 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11992906..11993792 1..887 99 -> Plus
arm_2L 11993857..11994047 888..1078 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:38 Download gff for RE72529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11992906..11993792 1..887 99 -> Plus
2L 11993857..11994047 888..1078 100   Plus

RE72529.hyp Sequence

Translation from 0 to 1013

> RE72529.hyp
SLESAAFICLYSNSQTVGFSCLVVIPITKMLTDRVLATKEALVVALGDNW
ERYRANMKNWFRSRWTKEEFDAESRKILTPDKLHLHNQFLLALLNKIDAF
APLENPPAVQTSSSSGNRSKRRKRSSRTFAERLNFELSDVLDFVAEDNMQ
IIRPPTTIGIPSDQQQQQLQSQRYCAQELFLPDAGFIMGRFLIGAWEIGL
VSVDDNVAEYVAMAVQVLLKDLLSAIIKKRKHYKTSGEGNFYYDVGAPLR
DPSLRNTVTRQKVDDTPLELDKELNTANFMRRQNDDVTFLSACEEVQPTE
RTVITLKDCQLALRDRNLIGSHAVYSINMERLNMMMH*

RE72529.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ada1-2-PA 308 CG31866-PA 1..308 30..337 1583 100 Plus
Ada1-1-PB 308 CG31865-PB 1..308 30..337 1578 99.7 Plus
Ada1-1-PA 308 CG31865-PA 1..308 30..337 1578 99.7 Plus

RE72529.pep Sequence

Translation from 87 to 1013

> RE72529.pep
MLTDRVLATKEALVVALGDNWERYRANMKNWFRSRWTKEEFDAESRKILT
PDKLHLHNQFLLALLNKIDAFAPLENPPAVQTSSSSGNRSKRRKRSSRTF
AERLNFELSDVLDFVAEDNMQIIRPPTTIGIPSDQQQQQLQSQRYCAQEL
FLPDAGFIMGRFLIGAWEIGLVSVDDNVAEYVAMAVQVLLKDLLSAIIKK
RKHYKTSGEGNFYYDVGAPLRDPSLRNTVTRQKVDDTPLELDKELNTANF
MRRQNDDVTFLSACEEVQPTERTVITLKDCQLALRDRNLIGSHAVYSINM
ERLNMMMH*

RE72529.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15138-PA 313 GF15138-PA 1..313 1..308 1366 88.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23753-PA 307 GG23753-PA 1..307 1..308 1601 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13820-PA 321 GH13820-PA 4..321 2..308 1322 80.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ada1-2-PA 308 CG31866-PA 1..308 1..308 1583 100 Plus
Ada1-1-PB 308 CG31865-PB 1..308 1..308 1578 99.7 Plus
Ada1-1-PA 308 CG31865-PA 1..308 1..308 1578 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24825-PA 319 GI24825-PA 4..319 2..308 1290 77.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18540-PA 305 GL18540-PA 1..305 1..308 1346 84.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16534-PA 305 GA16534-PA 1..305 1..308 1346 84.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26692-PA 308 GM26692-PA 1..308 1..308 1623 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23805-PA 308 GD23805-PA 1..308 1..308 1630 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22528-PA 318 GJ22528-PA 4..318 2..308 1258 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14963-PA 321 GK14963-PA 1..321 1..308 1334 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18560-PA 308 GE18560-PA 1..308 1..308 1618 97.4 Plus