BDGP Sequence Production Resources |
Search the DGRC for RE72625
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 726 |
Well: | 25 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13025-RA |
Protein status: | RE72625.pep: gold |
Preliminary Size: | 1827 |
Sequenced Size: | 3143 |
Gene | Date | Evidence |
---|---|---|
CG13025 | 2001-12-16 | Blastp of sequenced clone |
CG13025 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13025 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13025 | 2008-04-29 | Release 5.5 accounting |
CG13025 | 2008-08-15 | Release 5.9 accounting |
CG13025 | 2008-12-18 | 5.12 accounting |
3143 bp (3143 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071651
> RE72625.complete AGCTTGAAATTTAGCGTCCTATTGCAGGAAAGTCGCGAAATAGATAAAAT AATAACAAGAACTTTCATGTTTTCCAAGAGGAAAACTTGATTGAGACCAT ATATAGGTGAAACGGACAGCGAAGGTTTCGCAAAAGGCGACAGCGCCGTG GATCCGGAAATATACTCATCGGGCAGCAGGGAATGCGATCAGTCTGAAGC GAGAAAGCGGAATTCAGACATCCTGCTGCAAGGAATGGAGAATGAAACCG AAGCTCTTGATCCGGAAGTTTATGCCGATGAGACCTCTACAGATGATAGC TCTGGTGATGATGAGGTAATCCTCAATCCAGTTGAAGGTCTGCAGCCGGC GGTTGAGATTGATGAACAACGTGACCAGCCTGGTGAGAACGCGGAACCCG AGCAACCGAGAGTTCCGCCTTTAATTCTGGTAGATCCTCCGCATTTGCCC AGTCCCCCGAGAAATTCCCGCCGCAATCAAGGCGAAGAGCAGGAGGTGAT CTCATTAGAAACGCCATCACCGCCCAAGAAACGTAAACGTCTCTCCGCTG CTGCCGATAAAAGCCTTAAAAAGTCGCCCGAGGGCAAACCAATAGTTGTA GATGACGAGGACGATGGCATGACCTGTCCCATTTGTCTGGATTCCTGGGA GATGAGTGGCGAGCATCGACTGGTCTCGCTGCGATGTGGTCACCTCTTTG GGGAAAGCTGCATTCGGCGGTGGTTAAACGAAAGCCATCGCCAATCTTCT GTGAAGGTGTGCCCGCAGTGCAAGACGAAGGCCACATTTAGAGATATCCG TCATCTGTATGCGAAGCGCATTCAGATGCTGGACACGGATATTAGGGAGC AGCTGGAGGCGGAGCGGCGGCGTACACATACTCTAACAACAGAGCTGGCT ACCGCGAAGCTGGCTAACACACTCACCACTGAGAAGCTGATTCTCCTGCA GAAGGACTACGAACGGCTTAAGGAGCTGGTGAGGGCAGGTGGTGGTCGGG GAGCCTTCGGAGGCGATGCATCCGGCCAGAAGAGCATTCAACAACTAGCC ACCTACCGATTGTACATGGAGAAGAACTTCGAGATAACTCGAGATCCCGG CTGCCGTGTATTGCTCTATTCCGCCAAGCACTCCATGCTGGTGGCCTCGC AAAAGAGTGCCCAAAACCTGTTCCCCGGCTACGGCGTACGCTTTATTGAT CCACCTACCTTCAAGCCCCTGCAATTCCTGCACACCTCGGCACTCCTAAT CCGGGACATTGCTTTTAGTGACTCACAGCACTTGCTCACTGTGGCCAGTC GGGAACTAAAGATCAAGATATTCGACATAAGAACACGGCTTTGCTCGTCT ATGTTCACCGCTCATGACAAGATGCTGTGGTCTTGCGCCCTGGATCGCAA CGAGCGCGAACACTTTCTATACGGCGGAGATCTGCGAGGTGGAGTTTATA TCTACGACTTGCGGTTTCCCGAGAACATTCTCTGCGAGTTCCAAGCCGAA GTGAACTTAAGTCCTGTGATACACATAGCTCCTGTGCAACCCAATAAGAT TTTTACCAGCGGTGGCTTCCTGGTCTGCCAACTTACGGCCCTTACATTCT ACGAGTACGCTGCGGCCAGTGATACGGCTGTGCCCACTCGGCTAAATGTG GAGGGACCCTTTCTGTCCATGCAATACGATGCCGTGCAGGACACGGTGCT CATATCGGCACGATCCAATCCGAATTTCCCCCAGTCTCGCTTCATACTTG GTCGAATGGACAAGATTGACGGAACGCCGGTGCTGAAGGTCAAGGCCACC ATATATGGATCGAAGGCCACACCGGTTATGACGCGACCGACCCAACTGGC CGTCGAGGATAATACCTTAGTGGTTGGCTATCTCCAGGATAGTAAGCAGC TGATGATGCATGATGTGCGGCGGGAGGAGCGAGTGCAAACAATGCCGGTC AACGAGGTGATCTACGACATCTGCCCTGTGGCTACCCAGGCCGGATCCTA TTTGGCCGCCCTCACCGACAATAAGTGTAGAGTTTACAAAGTGAACAGTT CCATGCGATGATATATGTATGTGTGCATTAGTTTTCCGTGAAAATAACCA AAAAAAATTTTCTTTTAGCTAATTTCTGTGAAATATGTGACTACTGATAT AAACGAGCTTTTAAGCTAAGTTATTAGTTATAAATTTTTCATTATTTCCG TTTATTAAACATTTGTCAACCTTAAGGTTCGCGTACAAGATTAATCTGAA CATAATTCTATATTGTGTGTACTCCATGTTTTTGTTTTTGATTTTTGATT TCAATTTGTGAATGCTCAAAGTCTGTTGTGGATAAGTCTTGTATAAAGCA ATAGAAAATGTTGGTTCGATTAATAATATACATATAAAGCTATACAAAAA TGTTTTATCCATACAATATCCGATTTATATATGTATATGCGTAATTATAG ATACTCCTAAATGAAATGTGGAAATGAACGAATGTTTAAATAGATGTCTA AATTCATTCCTGACAGTCTCGAAATGTTTGCAACACTTCAAACTTTTGGA AAAGTCCTTCGATCTCAGACTTGCAACGAGTCTGACATTTCCAAGCCCAA GTAAATGTTTATGAATTCGGTTTTCTTCTCTCTTGAGTCTTGAGTTTTGT AAAATTCTATCAAAAAATGTTCGTCGTTGGTCGTTTGCTGGTTTTTTCTT TTTTTTTCGTAAATCAAAAACCTCTGTGGCATTTACTCCTATAAAGTTGT ATATGGTTTATAGTATTGTATATAGATTAGTGTGTTGAATAGTTGAAAGA CGCAGATCTATACTTTTTAAGTATAATTTTGTATATTTTGTGATGTTTTA TTTGTGTTTTTGCTGTTTGTGTCTGTGTGTTTATGTGTTCGTTAATGTTA AGATTAGAGAATACGTACTCGTATGAAGAAACGTATGGAGTCAGCATAAC TTAAGACTTTCAACTTAAACTTTAAGAGAACTAAATATCCGTTACACATA TATTTATATATATATAAACATTAGATTAACTTATGCTAAACTAAACACGA AACGAAGTCGGGAAGTATTAAGCTTTGATTAGGTAATCGGTTCGTATTAA ATTTAAAGAAATCGATTATTACTTACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13025-RA | 3184 | CG13025-RA | 58..3182 | 1..3125 | 15625 | 100 | Plus |
CG13025.a | 3132 | CG13025.a | 58..2123 | 1..2066 | 10330 | 100 | Plus |
Nrt-RA | 3986 | Nrt-RA | 2938..3986 | 3125..2077 | 5245 | 100 | Minus |
CG13025.a | 3132 | CG13025.a | 2124..3130 | 2119..3125 | 5035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 6107..6479 | 2551..2165 | 149 | 56 | Minus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 890..1023 | 2189..2057 | 136 | 56.7 | Minus |
Dbuz\Kepler | 722 | Dbuz\Kepler KEPLER 722bp | 407..481 | 2456..2377 | 126 | 67.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16766117..16767740 | 1502..3127 | 97 | <- | Minus |
chr3L | 16767802..16769302 | 1..1501 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..1827 | 235..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..1827 | 235..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..1827 | 235..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..1827 | 235..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..1827 | 235..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..3125 | 1..3127 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 30..3153 | 1..3124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 22..3145 | 1..3124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 1..3125 | 1..3127 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13025-RA | 22..3145 | 1..3124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16776528..16778153 | 1502..3127 | 99 | <- | Minus |
3L | 16778215..16779715 | 1..1501 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16776528..16778153 | 1502..3127 | 99 | <- | Minus |
3L | 16778215..16779715 | 1..1501 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16776528..16778153 | 1502..3127 | 99 | <- | Minus |
3L | 16778215..16779715 | 1..1501 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16769628..16771253 | 1502..3127 | 99 | <- | Minus |
arm_3L | 16771315..16772815 | 1..1501 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16769628..16771253 | 1502..3127 | 99 | <- | Minus |
3L | 16771315..16772815 | 1..1501 | 100 | Minus |
Translation from 234 to 2060
> RE72625.pep MENETEALDPEVYADETSTDDSSGDDEVILNPVEGLQPAVEIDEQRDQPG ENAEPEQPRVPPLILVDPPHLPSPPRNSRRNQGEEQEVISLETPSPPKKR KRLSAAADKSLKKSPEGKPIVVDDEDDGMTCPICLDSWEMSGEHRLVSLR CGHLFGESCIRRWLNESHRQSSVKVCPQCKTKATFRDIRHLYAKRIQMLD TDIREQLEAERRRTHTLTTELATAKLANTLTTEKLILLQKDYERLKELVR AGGGRGAFGGDASGQKSIQQLATYRLYMEKNFEITRDPGCRVLLYSAKHS MLVASQKSAQNLFPGYGVRFIDPPTFKPLQFLHTSALLIRDIAFSDSQHL LTVASRELKIKIFDIRTRLCSSMFTAHDKMLWSCALDRNEREHFLYGGDL RGGVYIYDLRFPENILCEFQAEVNLSPVIHIAPVQPNKIFTSGGFLVCQL TALTFYEYAAASDTAVPTRLNVEGPFLSMQYDAVQDTVLISARSNPNFPQ SRFILGRMDKIDGTPVLKVKATIYGSKATPVMTRPTQLAVEDNTLVVGYL QDSKQLMMHDVRREERVQTMPVNEVIYDICPVATQAGSYLAALTDNKCRV YKVNSSMR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10504-PA | 763 | GF10504-PA | 194..763 | 40..608 | 2471 | 81.2 | Plus |
Dana\GF20023-PA | 161 | GF20023-PA | 68..157 | 101..196 | 207 | 42.7 | Plus |
Dana\GF11644-PA | 261 | GF11644-PA | 135..191 | 130..192 | 193 | 54 | Plus |
Dana\GF21387-PA | 378 | GF21387-PA | 175..236 | 130..197 | 187 | 48.5 | Plus |
Dana\GF21156-PA | 369 | GF21156-PA | 302..366 | 126..196 | 171 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15851-PA | 660 | GG15851-PA | 49..660 | 1..608 | 2908 | 89.1 | Plus |
Dere\GG13729-PA | 176 | GG13729-PA | 60..174 | 77..196 | 193 | 33.1 | Plus |
Dere\GG24361-PA | 210 | GG24361-PA | 99..189 | 103..196 | 172 | 37.1 | Plus |
Dere\GG21800-PA | 134 | GG21800-PA | 61..131 | 122..198 | 166 | 40.3 | Plus |
Dere\GG25198-PA | 177 | GG25198-PA | 106..172 | 122..194 | 158 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15222-PA | 692 | GH15222-PA | 171..690 | 86..606 | 1843 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13025-PB | 608 | CG13025-PB | 1..608 | 1..608 | 3158 | 100 | Plus |
CG13025-PA | 608 | CG13025-PA | 1..608 | 1..608 | 3158 | 100 | Plus |
CG13481-PC | 176 | CG13481-PC | 95..174 | 111..196 | 199 | 41.9 | Plus |
CG13481-PB | 176 | CG13481-PB | 95..174 | 111..196 | 199 | 41.9 | Plus |
CG17329-PA | 162 | CG17329-PA | 96..156 | 127..193 | 163 | 46.3 | Plus |
CG31807-PB | 142 | CG31807-PB | 82..134 | 130..188 | 162 | 54.2 | Plus |
CG31807-PA | 155 | CG31807-PA | 95..147 | 130..188 | 162 | 54.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11932-PA | 684 | GI11932-PA | 122..682 | 48..606 | 2091 | 71.1 | Plus |
Dmoj\GI13216-PA | 214 | GI13216-PA | 155..212 | 131..194 | 174 | 50 | Plus |
Dmoj\GI12097-PA | 263 | GI12097-PA | 199..255 | 130..192 | 159 | 44.4 | Plus |
Dmoj\GI15028-PA | 241 | GI15028-PA | 148..237 | 86..192 | 152 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20867-PA | 330 | GL20867-PA | 1..329 | 278..606 | 1325 | 71.4 | Plus |
Dper\GL20866-PA | 240 | GL20866-PA | 136..235 | 69..167 | 353 | 70.2 | Plus |
Dper\GL19299-PA | 159 | GL19299-PA | 90..156 | 124..192 | 177 | 41.7 | Plus |
Dper\GL15116-PA | 178 | GL15116-PA | 65..171 | 82..191 | 174 | 36.3 | Plus |
Dper\GL15113-PA | 259 | GL15113-PA | 194..254 | 130..196 | 152 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11982-PA | 677 | GA11982-PA | 144..676 | 77..606 | 2027 | 69.3 | Plus |
Dpse\GA25907-PA | 159 | GA25907-PA | 90..156 | 124..192 | 175 | 41.7 | Plus |
Dpse\GA25513-PA | 178 | GA25513-PA | 65..171 | 82..191 | 171 | 36.3 | Plus |
Dpse\GA26106-PA | 186 | GA26106-PA | 117..181 | 121..191 | 163 | 39.4 | Plus |
Dpse\GA25508-PA | 301 | GA25508-PA | 236..296 | 130..196 | 152 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24368-PA | 601 | GM24368-PA | 1..601 | 8..608 | 3018 | 94.8 | Plus |
Dsec\GM18080-PA | 164 | GM18080-PA | 89..161 | 131..211 | 184 | 46.9 | Plus |
Dsec\GM18662-PA | 176 | GM18662-PA | 3..170 | 17..193 | 180 | 30.9 | Plus |
Dsec\GM17169-PA | 155 | GM17169-PA | 95..150 | 130..191 | 172 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12443-PA | 601 | GD12443-PA | 1..601 | 8..608 | 3016 | 95 | Plus |
Dsim\GD22698-PA | 164 | GD22698-PA | 88..145 | 130..193 | 188 | 53.1 | Plus |
Dsim\GD24047-PA | 176 | GD24047-PA | 3..170 | 17..193 | 179 | 30.9 | Plus |
Dsim\GD21906-PA | 155 | GD21906-PA | 95..150 | 130..191 | 174 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12158-PA | 680 | GJ12158-PA | 54..678 | 2..606 | 2099 | 65.3 | Plus |
Dvir\GJ11989-PA | 96 | GJ11989-PA | 30..93 | 124..193 | 199 | 47.1 | Plus |
Dvir\GJ11990-PA | 229 | GJ11990-PA | 165..227 | 126..194 | 176 | 46.4 | Plus |
Dvir\GJ15380-PA | 258 | GJ15380-PA | 193..253 | 126..192 | 172 | 49.3 | Plus |
Dvir\GJ13370-PA | 108 | GJ13370-PA | 3..101 | 85..192 | 168 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13567-PA | 671 | GK13567-PA | 130..670 | 73..606 | 2058 | 70.2 | Plus |
Dwil\GK19353-PA | 135 | GK19353-PA | 60..135 | 121..202 | 153 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22190-PA | 662 | GE22190-PA | 49..662 | 1..608 | 2847 | 88.9 | Plus |
Dyak\GE20024-PA | 176 | GE20024-PA | 110..174 | 126..196 | 187 | 43.7 | Plus |
Dyak\GE11876-PA | 220 | GE11876-PA | 155..219 | 122..192 | 174 | 43.7 | Plus |
Dyak\GE14698-PA | 263 | GE14698-PA | 159..228 | 120..193 | 169 | 43.4 | Plus |
Dyak\GE13175-PA | 154 | GE13175-PA | 94..148 | 131..191 | 163 | 50.8 | Plus |
Translation from 234 to 2060
> RE72625.hyp MENETEALDPEVYADETSTDDSSGDDEVILNPVEGLQPAVEIDEQRDQPG ENAEPEQPRVPPLILVDPPHLPSPPRNSRRNQGEEQEVISLETPSPPKKR KRLSAAADKSLKKSPEGKPIVVDDEDDGMTCPICLDSWEMSGEHRLVSLR CGHLFGESCIRRWLNESHRQSSVKVCPQCKTKATFRDIRHLYAKRIQMLD TDIREQLEAERRRTHTLTTELATAKLANTLTTEKLILLQKDYERLKELVR AGGGRGAFGGDASGQKSIQQLATYRLYMEKNFEITRDPGCRVLLYSAKHS MLVASQKSAQNLFPGYGVRFIDPPTFKPLQFLHTSALLIRDIAFSDSQHL LTVASRELKIKIFDIRTRLCSSMFTAHDKMLWSCALDRNEREHFLYGGDL RGGVYIYDLRFPENILCEFQAEVNLSPVIHIAPVQPNKIFTSGGFLVCQL TALTFYEYAAASDTAVPTRLNVEGPFLSMQYDAVQDTVLISARSNPNFPQ SRFILGRMDKIDGTPVLKVKATIYGSKATPVMTRPTQLAVEDNTLVVGYL QDSKQLMMHDVRREERVQTMPVNEVIYDICPVATQAGSYLAALTDNKCRV YKVNSSMR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13025-PB | 608 | CG13025-PB | 1..608 | 1..608 | 3158 | 100 | Plus |
CG13025-PA | 608 | CG13025-PA | 1..608 | 1..608 | 3158 | 100 | Plus |
CG13481-PC | 176 | CG13481-PC | 95..174 | 111..196 | 199 | 41.9 | Plus |
CG13481-PB | 176 | CG13481-PB | 95..174 | 111..196 | 199 | 41.9 | Plus |
CG17329-PA | 162 | CG17329-PA | 96..156 | 127..193 | 163 | 46.3 | Plus |