BDGP Sequence Production Resources |
Search the DGRC for RE72803
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 728 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4753-RA |
Protein status: | RE72803.pep: gold |
Preliminary Size: | 1215 |
Sequenced Size: | 1586 |
Gene | Date | Evidence |
---|---|---|
CG4753 | 2001-12-13 | Blastp of sequenced clone |
CG4753 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4753 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4753 | 2008-04-29 | Release 5.5 accounting |
CG4753 | 2008-08-15 | Release 5.9 accounting |
CG4753 | 2008-12-18 | 5.12 accounting |
1586 bp (1586 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070622
> RE72803.complete GTTTTTGAGATTCCCAGAAATGCTTTCAAAAGTTACCTTTTGAACAGGAA GGAAATGAGCAATAAGCAAAGCATATTATCCAAATATTTGTGTTTATCAG CATTCTTCCTACACGTTCGTTTCTTTATCAGTTGTAACGATCAGAAGCAG CACACGTTCCGTTAGTTCGACTGCTTGCCCTTGGCTATATGATCAATACA ACCACACGCCAAGCATAAAATCGCCTTTATTCGCCGATAAGCAGTGTCGC CCATTCCAATTGACTGATAACAGGATGTCGCATCTCCGGGGTTTGGGGCG ACTGCTGATCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTG GCCAGCTCCTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCC CGCAGTCTGGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTG TGTGGCGGAATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCC AGGACGAGCAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAAC CACACGTACGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCT GGGCAATCTGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATG TTCCGGTCCTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGAC CGCAACTTCGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGT CTTCTCCTATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCC GTTTCACACCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGA GGTCTTCCCCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCAC GACCAGTCTGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCA ATCTGGCCTTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAG TTGAACGGAGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACT GGACGTGGTTCCCGATGACGAGAAGGAGGCCGCCGCCTGGATGCAGGACT TCTTTGCGGAAAAGGACAAGATCATCGACAGCTTCCACGAGACCGGCAGC TTCTTTAAGAATTCCGGAGTCAAGGAGGTGCCCGAGAAAATCTACAAGCC GCGCCTGAGCACGCTCCTCAACTTCTTGGGCTGGGCCACCTTTGCCGTCC TGTGCATTCTGCACTACTTGGTCACCTCGCTGGTTGCCGGCAACTGGTTT GGCTTCATCACGGTTCTTTCCATTTTGGGAGGATTCTATAGCCTCATGGA ATACGCTGTGAATGCTTCGAAGATCAGCAAAGCCTCTGCGTATGGAGCAG CTGCTGCCAAGAAATAGATTTTCATACCTGAGTTTTATAAACTCTGCAAC AGTTTTGGAATATACGACCTATGGACTAATAACTCAACTGCACTGACCAT AGAAATATTATGTACATTGAATATGTACGATAAACCATTGTAGTTAACTG AATAAAATAACATTTTATGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4753-RB | 1574 | CG4753-RB | 1..1574 | 1..1574 | 7855 | 99.9 | Plus |
CG4753.b | 1842 | CG4753.b | 446..1748 | 272..1574 | 6500 | 99.9 | Plus |
CG4753.a | 1584 | CG4753.a | 277..1579 | 272..1574 | 6500 | 99.9 | Plus |
CG4753.b | 1842 | CG4753.b | 1..274 | 1..274 | 1370 | 100 | Plus |
CG4753.a | 1584 | CG4753.a | 1..273 | 1..273 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16369449..16369984 | 976..441 | 2680 | 100 | Minus |
chr3L | 24539361 | chr3L | 16369019..16369378 | 1334..975 | 1800 | 100 | Minus |
chr3L | 24539361 | chr3L | 16371052..16371325 | 274..1 | 1370 | 100 | Minus |
chr3L | 24539361 | chr3L | 16368723..16368958 | 1570..1335 | 1180 | 100 | Minus |
chr3L | 24539361 | chr3L | 16370226..16370394 | 440..272 | 845 | 100 | Minus |
chr3L | 24539361 | chr3L | 16373108..16373542 | 954..520 | 570 | 75.4 | Minus |
chr3L | 24539361 | chr3L | 16372292..16372425 | 1179..1046 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16379700..16380235 | 976..441 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 16379270..16379629 | 1334..975 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16381297..16381570 | 274..1 | 1370 | 100 | Minus |
3L | 28110227 | 3L | 16378970..16379209 | 1574..1335 | 1185 | 99.6 | Minus |
3L | 28110227 | 3L | 16380471..16380639 | 440..272 | 845 | 100 | Minus |
3L | 28110227 | 3L | 16383353..16383787 | 954..520 | 540 | 74.9 | Minus |
3L | 28110227 | 3L | 16382537..16382670 | 1179..1046 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16372800..16373335 | 976..441 | 2680 | 100 | Minus |
3L | 28103327 | 3L | 16372370..16372729 | 1334..975 | 1800 | 100 | Minus |
3L | 28103327 | 3L | 16374397..16374670 | 274..1 | 1370 | 100 | Minus |
3L | 28103327 | 3L | 16372070..16372309 | 1574..1335 | 1185 | 99.5 | Minus |
3L | 28103327 | 3L | 16373571..16373739 | 440..272 | 845 | 100 | Minus |
3L | 28103327 | 3L | 16375637..16375770 | 1179..1046 | 325 | 82.8 | Minus |
3L | 28103327 | 3L | 16376686..16376887 | 721..520 | 260 | 75.2 | Minus |
3L | 28103327 | 3L | 16376560..16376670 | 847..737 | 240 | 81 | Minus |
3L | 28103327 | 3L | 16376453..16376541 | 954..866 | 175 | 79.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16368723..16368958 | 1335..1570 | 100 | <- | Minus |
chr3L | 16369019..16369376 | 977..1334 | 100 | <- | Minus |
chr3L | 16369449..16369984 | 441..976 | 100 | <- | Minus |
chr3L | 16370226..16370392 | 274..440 | 100 | <- | Minus |
chr3L | 16371053..16371325 | 1..273 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RA | 1..1143 | 275..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RA | 1..1143 | 275..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1143 | 275..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RA | 1..1143 | 275..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1143 | 275..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1570 | 1..1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1570 | 1..1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1570 | 1..1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1570 | 1..1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4753-RB | 1..1570 | 1..1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16378974..16379209 | 1335..1570 | 100 | <- | Minus |
3L | 16379270..16379627 | 977..1334 | 100 | <- | Minus |
3L | 16379700..16380235 | 441..976 | 100 | <- | Minus |
3L | 16380471..16380637 | 274..440 | 100 | <- | Minus |
3L | 16381298..16381570 | 1..273 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16378974..16379209 | 1335..1570 | 100 | <- | Minus |
3L | 16379270..16379627 | 977..1334 | 100 | <- | Minus |
3L | 16379700..16380235 | 441..976 | 100 | <- | Minus |
3L | 16380471..16380637 | 274..440 | 100 | <- | Minus |
3L | 16381298..16381570 | 1..273 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16378974..16379209 | 1335..1570 | 100 | <- | Minus |
3L | 16379270..16379627 | 977..1334 | 100 | <- | Minus |
3L | 16379700..16380235 | 441..976 | 100 | <- | Minus |
3L | 16380471..16380637 | 274..440 | 100 | <- | Minus |
3L | 16381298..16381570 | 1..273 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16372074..16372309 | 1335..1570 | 100 | <- | Minus |
arm_3L | 16372370..16372727 | 977..1334 | 100 | <- | Minus |
arm_3L | 16372800..16373335 | 441..976 | 100 | <- | Minus |
arm_3L | 16373571..16373737 | 274..440 | 100 | <- | Minus |
arm_3L | 16374398..16374670 | 1..273 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16373571..16373737 | 274..440 | 100 | <- | Minus |
3L | 16372074..16372309 | 1335..1570 | 100 | <- | Minus |
3L | 16372370..16372727 | 977..1334 | 100 | <- | Minus |
3L | 16372800..16373335 | 441..976 | 100 | <- | Minus |
3L | 16374398..16374670 | 1..273 | 100 | Minus |
Translation from 274 to 1416
> RE72803.hyp MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI LGGFYSLMEYAVNASKISKASAYGAAAAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4753-PC | 380 | CG4753-PC | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4753-PA | 380 | CG4753-PA | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4753-PB | 380 | CG4753-PB | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4729-PB | 386 | CG4729-PB | 15..381 | 10..376 | 1268 | 62.7 | Plus |
CG4729-PC | 386 | CG4729-PC | 15..381 | 10..376 | 1268 | 62.7 | Plus |
Translation from 274 to 1416
> RE72803.pep MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI LGGFYSLMEYAVNASKISKASAYGAAAAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10215-PA | 379 | GF10215-PA | 1..379 | 1..379 | 1727 | 82.8 | Plus |
Dana\GF10214-PA | 386 | GF10214-PA | 7..383 | 1..378 | 1323 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13456-PA | 379 | GG13456-PA | 1..379 | 1..379 | 1980 | 97.6 | Plus |
Dere\GG13455-PA | 387 | GG13455-PA | 7..381 | 1..376 | 1275 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15594-PA | 387 | GH15594-PA | 12..382 | 7..377 | 1398 | 68.5 | Plus |
Dgri\GH15593-PA | 383 | GH15593-PA | 9..381 | 7..379 | 1223 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Agpat4-PC | 380 | CG4753-PC | 1..380 | 1..380 | 2014 | 100 | Plus |
Agpat4-PA | 380 | CG4753-PA | 1..380 | 1..380 | 2014 | 100 | Plus |
Agpat4-PB | 380 | CG4753-PB | 1..380 | 1..380 | 2014 | 100 | Plus |
Agpat3-PB | 386 | CG4729-PB | 15..381 | 10..376 | 1268 | 62.7 | Plus |
Agpat3-PC | 386 | CG4729-PC | 15..381 | 10..376 | 1268 | 62.7 | Plus |
Agpat3-PA | 386 | CG4729-PA | 15..381 | 10..376 | 1268 | 62.7 | Plus |
Agpat3-PE | 397 | CG4729-PE | 26..392 | 10..376 | 1268 | 62.7 | Plus |
Agpat3-PD | 143 | CG4729-PD | 1..138 | 239..376 | 451 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16871-PA | 388 | GI16871-PA | 12..384 | 7..379 | 1355 | 66.5 | Plus |
Dmoj\GI16870-PA | 387 | GI16870-PA | 12..383 | 7..379 | 1109 | 54.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17999-PA | 383 | GL17999-PA | 1..380 | 1..380 | 1723 | 82.1 | Plus |
Dper\GL17998-PA | 389 | GL17998-PA | 7..385 | 1..380 | 1311 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18406-PA | 383 | GA18406-PA | 1..380 | 1..380 | 1723 | 82.1 | Plus |
Dpse\GA18389-PA | 389 | GA18389-PA | 7..385 | 1..380 | 1309 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24407-PA | 378 | GM24407-PA | 1..376 | 1..376 | 1971 | 98.1 | Plus |
Dsec\GM24405-PA | 386 | GM24405-PA | 7..381 | 1..376 | 1276 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12475-PA | 380 | GD12475-PA | 1..380 | 1..380 | 2015 | 99.5 | Plus |
Dsim\GD12474-PA | 386 | GD12474-PA | 7..381 | 1..376 | 1279 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12621-PA | 388 | GJ12621-PA | 12..384 | 7..379 | 1327 | 65.4 | Plus |
Dvir\GJ12620-PA | 337 | GJ12620-PA | 2..333 | 47..379 | 1124 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20796-PA | 382 | GK20796-PA | 1..380 | 1..380 | 1471 | 69.2 | Plus |
Dwil\GK20785-PA | 395 | GK20785-PA | 7..382 | 1..377 | 1270 | 62.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22557-PA | 379 | GE22557-PA | 1..379 | 1..379 | 1972 | 97.4 | Plus |
Dyak\GE22904-PA | 379 | GE22904-PA | 1..379 | 1..379 | 1970 | 97.1 | Plus |
Dyak\GE22556-PA | 387 | GE22556-PA | 7..383 | 1..378 | 1276 | 61.6 | Plus |
Dyak\GE22903-PA | 387 | GE22903-PA | 7..383 | 1..378 | 1276 | 61.6 | Plus |