Clone RE72803 Report

Search the DGRC for RE72803

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:728
Well:3
Vector:pFlc-1
Associated Gene/TranscriptCG4753-RA
Protein status:RE72803.pep: gold
Preliminary Size:1215
Sequenced Size:1586

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4753 2001-12-13 Blastp of sequenced clone
CG4753 2002-01-01 Sim4 clustering to Release 2
CG4753 2003-01-01 Sim4 clustering to Release 3
CG4753 2008-04-29 Release 5.5 accounting
CG4753 2008-08-15 Release 5.9 accounting
CG4753 2008-12-18 5.12 accounting

Clone Sequence Records

RE72803.complete Sequence

1586 bp (1586 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070622

> RE72803.complete
GTTTTTGAGATTCCCAGAAATGCTTTCAAAAGTTACCTTTTGAACAGGAA
GGAAATGAGCAATAAGCAAAGCATATTATCCAAATATTTGTGTTTATCAG
CATTCTTCCTACACGTTCGTTTCTTTATCAGTTGTAACGATCAGAAGCAG
CACACGTTCCGTTAGTTCGACTGCTTGCCCTTGGCTATATGATCAATACA
ACCACACGCCAAGCATAAAATCGCCTTTATTCGCCGATAAGCAGTGTCGC
CCATTCCAATTGACTGATAACAGGATGTCGCATCTCCGGGGTTTGGGGCG
ACTGCTGATCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTG
GCCAGCTCCTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCC
CGCAGTCTGGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTG
TGTGGCGGAATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCC
AGGACGAGCAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAAC
CACACGTACGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCT
GGGCAATCTGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATG
TTCCGGTCCTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGAC
CGCAACTTCGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGT
CTTCTCCTATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCC
GTTTCACACCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGA
GGTCTTCCCCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCAC
GACCAGTCTGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCA
ATCTGGCCTTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAG
TTGAACGGAGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACT
GGACGTGGTTCCCGATGACGAGAAGGAGGCCGCCGCCTGGATGCAGGACT
TCTTTGCGGAAAAGGACAAGATCATCGACAGCTTCCACGAGACCGGCAGC
TTCTTTAAGAATTCCGGAGTCAAGGAGGTGCCCGAGAAAATCTACAAGCC
GCGCCTGAGCACGCTCCTCAACTTCTTGGGCTGGGCCACCTTTGCCGTCC
TGTGCATTCTGCACTACTTGGTCACCTCGCTGGTTGCCGGCAACTGGTTT
GGCTTCATCACGGTTCTTTCCATTTTGGGAGGATTCTATAGCCTCATGGA
ATACGCTGTGAATGCTTCGAAGATCAGCAAAGCCTCTGCGTATGGAGCAG
CTGCTGCCAAGAAATAGATTTTCATACCTGAGTTTTATAAACTCTGCAAC
AGTTTTGGAATATACGACCTATGGACTAATAACTCAACTGCACTGACCAT
AGAAATATTATGTACATTGAATATGTACGATAAACCATTGTAGTTAACTG
AATAAAATAACATTTTATGCAAAAAAAAAAAAAAAA

RE72803.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RB 1574 CG4753-RB 1..1574 1..1574 7855 99.9 Plus
CG4753.b 1842 CG4753.b 446..1748 272..1574 6500 99.9 Plus
CG4753.a 1584 CG4753.a 277..1579 272..1574 6500 99.9 Plus
CG4753.b 1842 CG4753.b 1..274 1..274 1370 100 Plus
CG4753.a 1584 CG4753.a 1..273 1..273 1365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16369449..16369984 976..441 2680 100 Minus
chr3L 24539361 chr3L 16369019..16369378 1334..975 1800 100 Minus
chr3L 24539361 chr3L 16371052..16371325 274..1 1370 100 Minus
chr3L 24539361 chr3L 16368723..16368958 1570..1335 1180 100 Minus
chr3L 24539361 chr3L 16370226..16370394 440..272 845 100 Minus
chr3L 24539361 chr3L 16373108..16373542 954..520 570 75.4 Minus
chr3L 24539361 chr3L 16372292..16372425 1179..1046 325 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379700..16380235 976..441 2680 100 Minus
3L 28110227 3L 16379270..16379629 1334..975 1800 100 Minus
3L 28110227 3L 16381297..16381570 274..1 1370 100 Minus
3L 28110227 3L 16378970..16379209 1574..1335 1185 99.6 Minus
3L 28110227 3L 16380471..16380639 440..272 845 100 Minus
3L 28110227 3L 16383353..16383787 954..520 540 74.9 Minus
3L 28110227 3L 16382537..16382670 1179..1046 325 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16372800..16373335 976..441 2680 100 Minus
3L 28103327 3L 16372370..16372729 1334..975 1800 100 Minus
3L 28103327 3L 16374397..16374670 274..1 1370 100 Minus
3L 28103327 3L 16372070..16372309 1574..1335 1185 99.5 Minus
3L 28103327 3L 16373571..16373739 440..272 845 100 Minus
3L 28103327 3L 16375637..16375770 1179..1046 325 82.8 Minus
3L 28103327 3L 16376686..16376887 721..520 260 75.2 Minus
3L 28103327 3L 16376560..16376670 847..737 240 81 Minus
3L 28103327 3L 16376453..16376541 954..866 175 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 09:06:39 has no hits.

RE72803.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:25 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16368723..16368958 1335..1570 100 <- Minus
chr3L 16369019..16369376 977..1334 100 <- Minus
chr3L 16369449..16369984 441..976 100 <- Minus
chr3L 16370226..16370392 274..440 100 <- Minus
chr3L 16371053..16371325 1..273 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:17 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 1..1143 275..1417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:18 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 1..1143 275..1417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:00:17 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1143 275..1417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:24 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 1..1143 275..1417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:29 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1143 275..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:29 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:18 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:00:17 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:24 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:29 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 1..1570 1..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:25 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16378974..16379209 1335..1570 100 <- Minus
3L 16379270..16379627 977..1334 100 <- Minus
3L 16379700..16380235 441..976 100 <- Minus
3L 16380471..16380637 274..440 100 <- Minus
3L 16381298..16381570 1..273 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:25 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16378974..16379209 1335..1570 100 <- Minus
3L 16379270..16379627 977..1334 100 <- Minus
3L 16379700..16380235 441..976 100 <- Minus
3L 16380471..16380637 274..440 100 <- Minus
3L 16381298..16381570 1..273 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:25 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16378974..16379209 1335..1570 100 <- Minus
3L 16379270..16379627 977..1334 100 <- Minus
3L 16379700..16380235 441..976 100 <- Minus
3L 16380471..16380637 274..440 100 <- Minus
3L 16381298..16381570 1..273 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:00:17 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372074..16372309 1335..1570 100 <- Minus
arm_3L 16372370..16372727 977..1334 100 <- Minus
arm_3L 16372800..16373335 441..976 100 <- Minus
arm_3L 16373571..16373737 274..440 100 <- Minus
arm_3L 16374398..16374670 1..273 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:28 Download gff for RE72803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16373571..16373737 274..440 100 <- Minus
3L 16372074..16372309 1335..1570 100 <- Minus
3L 16372370..16372727 977..1334 100 <- Minus
3L 16372800..16373335 441..976 100 <- Minus
3L 16374398..16374670 1..273 100   Minus

RE72803.hyp Sequence

Translation from 274 to 1416

> RE72803.hyp
MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH
YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL
TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV
VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH
LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP
YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK
EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI
LGGFYSLMEYAVNASKISKASAYGAAAAKK*

RE72803.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PC 380 CG4753-PC 1..380 1..380 2014 100 Plus
CG4753-PA 380 CG4753-PA 1..380 1..380 2014 100 Plus
CG4753-PB 380 CG4753-PB 1..380 1..380 2014 100 Plus
CG4729-PB 386 CG4729-PB 15..381 10..376 1268 62.7 Plus
CG4729-PC 386 CG4729-PC 15..381 10..376 1268 62.7 Plus

RE72803.pep Sequence

Translation from 274 to 1416

> RE72803.pep
MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH
YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL
TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV
VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH
LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP
YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK
EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI
LGGFYSLMEYAVNASKISKASAYGAAAAKK*

RE72803.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10215-PA 379 GF10215-PA 1..379 1..379 1727 82.8 Plus
Dana\GF10214-PA 386 GF10214-PA 7..383 1..378 1323 64.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13456-PA 379 GG13456-PA 1..379 1..379 1980 97.6 Plus
Dere\GG13455-PA 387 GG13455-PA 7..381 1..376 1275 62 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15594-PA 387 GH15594-PA 12..382 7..377 1398 68.5 Plus
Dgri\GH15593-PA 383 GH15593-PA 9..381 7..379 1223 57.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Agpat4-PC 380 CG4753-PC 1..380 1..380 2014 100 Plus
Agpat4-PA 380 CG4753-PA 1..380 1..380 2014 100 Plus
Agpat4-PB 380 CG4753-PB 1..380 1..380 2014 100 Plus
Agpat3-PB 386 CG4729-PB 15..381 10..376 1268 62.7 Plus
Agpat3-PC 386 CG4729-PC 15..381 10..376 1268 62.7 Plus
Agpat3-PA 386 CG4729-PA 15..381 10..376 1268 62.7 Plus
Agpat3-PE 397 CG4729-PE 26..392 10..376 1268 62.7 Plus
Agpat3-PD 143 CG4729-PD 1..138 239..376 451 60.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16871-PA 388 GI16871-PA 12..384 7..379 1355 66.5 Plus
Dmoj\GI16870-PA 387 GI16870-PA 12..383 7..379 1109 54.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17999-PA 383 GL17999-PA 1..380 1..380 1723 82.1 Plus
Dper\GL17998-PA 389 GL17998-PA 7..385 1..380 1311 64.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18406-PA 383 GA18406-PA 1..380 1..380 1723 82.1 Plus
Dpse\GA18389-PA 389 GA18389-PA 7..385 1..380 1309 64.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24407-PA 378 GM24407-PA 1..376 1..376 1971 98.1 Plus
Dsec\GM24405-PA 386 GM24405-PA 7..381 1..376 1276 62 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12475-PA 380 GD12475-PA 1..380 1..380 2015 99.5 Plus
Dsim\GD12474-PA 386 GD12474-PA 7..381 1..376 1279 62 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12621-PA 388 GJ12621-PA 12..384 7..379 1327 65.4 Plus
Dvir\GJ12620-PA 337 GJ12620-PA 2..333 47..379 1124 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20796-PA 382 GK20796-PA 1..380 1..380 1471 69.2 Plus
Dwil\GK20785-PA 395 GK20785-PA 7..382 1..377 1270 62.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22557-PA 379 GE22557-PA 1..379 1..379 1972 97.4 Plus
Dyak\GE22904-PA 379 GE22904-PA 1..379 1..379 1970 97.1 Plus
Dyak\GE22556-PA 387 GE22556-PA 7..383 1..378 1276 61.6 Plus
Dyak\GE22903-PA 387 GE22903-PA 7..383 1..378 1276 61.6 Plus