Clone RE72821 Report

Search the DGRC for RE72821

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:728
Well:21
Vector:pFlc-1
Associated Gene/TranscriptNbr-RA
Protein status:RE72821.pep: gold
Sequenced Size:2330

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9247-RA 2011-07-18 Manual selection by Sue Celniker

Clone Sequence Records

RE72821.complete Sequence

2330 bp assembled on 2011-11-04

GenBank Submission: BT132751.1

> RE72821.complete
GTCGATTGCATTTGCAATTGGCAATTGCACTTGCTTCGCTCTGCAGTGGC
ACGGGAAACCCGTGAGAAATGGCACGCAAGAGCCACATGTACAACGCAAT
ACCCGCCGGCTTTGAGTCGGACGAGGAGAACATGGAGAACCTAATGAGCA
ACCTGAAGATCAAGCGCTTGGAGGACATCACGACAGGTGCTGGAATCGAC
GGCTGTAACTTTGACGCCACCTTGGACGCAAAGGCGGAGGAGTTTTTTAA
GCTGTTCCGCGAGAAGTGGAACATGTATAGCAAGAAAAAGTCGCCACATC
TGCGCCAGGAATTTGGAAGGGCTTTAATGGGCCATCAGGATCCTTTGCTC
CTGGCCCTGAAGATCTTCGCCAACTGCCCAGACAGCAGCAACATCAAGAC
GAAGAGCTTGTCACATTTTGTGCTGGACACGGTTTGCAAGCTCCACAAGG
ATTTCCCGCATCTTGGCGAGGGCTGTGATCCCAACACCAGCATGATAGCC
TTTAACTTTGTCAAGACCTCCGGCTTGCTGGCCCTCAACAATGCTGTTAT
CCATGCCTACAGTCTACGTCAGATCCGCGACCTACTGCTTCCCAAGTTGC
GCGAACTCCTGGACAACGGGCTTTACAAAGAGGTCACCCAATGGTCCATC
AGTCTGCAGTTGACGCACGAGTTCGACATGCTGGAACTGGCTTTCCCGCT
GATTGCAATTGAGAAACTACCACTGGCCGAGGAATATCTGGACCATGCCA
CACAGCAGAGGTTGCCCTTTGTCAAGTTCTTGGATTCGTTGCTGCACAAG
GAGAAGTCGGTTTTAGAGCTCTGCGAGCATCTACTCGATCGGTACAAAAA
TCTCAAAATTTCCCATAACGTGCTCAGCTATCGGCCTATGGCCAAGATTG
TGGCGCGACTGGCCAAGAAGTATGGTTTTGACGACGCCGTCACGCCCAAC
TATAAGTTCACGAAGACGTGCAGCTACTTGCATTACCTTTACCGCGAGTA
CGAGAAGACGCGCATGAACCTGGCCAGTTTCCGGGAGGTTGTGAGCGTCC
ATGCCTTTAACCACGAGCTGCGCACGGACTTCGTAAAGTATTTGGCCTCT
GCTGGAGCTCATTCTGAAGCCATCTACTGGTACACGGAGTTCAATATTGA
CCCGAAAGATTGTCCGTTGGAGATCGAGACGCAGGTATCGCAAAACGGTG
CTGGAAAAGCGTCAGGCTGGGAATCCCCCGGCAAGGAACGCTGTCCTTCG
AGTAGATGTGATATGTACCTGACCATGGACCTGCCCGACGAGTGCCTTAT
CATTGTGAACAAGGCTGATGAGTTCGATCGTATGTTATACCATCTGCAGC
AGGAGTGCGTCATATACCTGGATTCTGAATGGATGCAGAGCGTGTGCGGA
GACAATCAGCTGTGCGTGCTACAGATCGCCACCGGCCACAATGTCTACCT
GATCGATTGCCTGGCGCGGGAGAGCTTACGCTCGGAACACTGGCGCTTGC
TGGGCGCGAATATCTTTAATAACGTGAACATCCGTAAGGTGGGGTTCTCT
ATGGTCAGTGATCTCAGTGTATTGCAGCGGTCACTGCCCCTGCAACTGCG
CCTTCAAATGCCTCACCACTACTTGGACCTTCGCAATCTCTGGTTGGAGT
TAAAAAAGCAGCGCTTCGGCGTTGAACTTCCCTTCGGCAATGTTAACCGG
GCAGGAGACGCCCTTACGGATCTCTCATTGGCATGCCTTGGCAAGAAACT
GAACAAATCAAACCAGTGCTCAAACTGGGCCAATAGACCGCTGCGTCGCG
AGCAGATTCTTTATGCAGCCATCGATGCGCGGTGTTTGATGCTGATCTAC
AACACGCTCATTGAACGCGTGTCCTTCATACAAGCGGTTATCGAAAAGAG
CATCGCCAGCAATAACTTTCTCAGGCGGGGTGCCCATGTTAAGTGATTGA
GGAGCTGGCCTCTGTTATACCCATGCTCCTTTTGATGGATAGCGATTATC
ACGAAGACGACAAAGGCGTTCGCCCAACATTTATTAAGTGCAAATGTTAT
ATGTAGTTGCAAAGAGTATTTAACATATATTTAGTGACTAGCCAGGCAGC
TGGGTTAGTGCCGAGTTAGGCAGTTTGTACACATGTTACAAATCAGAAGG
AAACTATGTGACTGCGAGCAGGATATGAAAGAATGAATTTTATTACGTTA
TGATTTCAAGCTCACTGTATCTCCATACTTTAAATACTTGCATTATTCCA
ATTCGTAAATTCGCGTATTATTTGAATTCACGCATGATCAAAACTGAATA
AAAGCAATGAATAAGAAAAAAAAAAAAAAA

RE72821.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21159703..21160682 1818..839 4900 100 Minus
chr2L 23010047 chr2L 21160738..21161575 838..1 4175 99.9 Minus
chr2L 23010047 chr2L 21159150..21159647 2313..1816 2490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21161198..21162177 1818..839 4900 100 Minus
2L 23513712 2L 21162233..21163070 838..1 4175 99.9 Minus
2L 23513712 2L 21160645..21161142 2313..1816 2490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21161198..21162177 1818..839 4900 100 Minus
2L 23513712 2L 21162233..21163070 838..1 4175 99.8 Minus
2L 23513712 2L 21160645..21161142 2313..1816 2490 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:14:54 has no hits.

RE72821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:15:41 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21159148..21159644 1819..2315 99 <- Minus
chr2L 21159703..21160682 839..1818 100 <- Minus
chr2L 21160738..21161575 1..838 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-04 08:58:38 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9247-RA 1..1878 69..1946 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:40:19 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
Nbr-RA 1..1878 69..1946 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:27:08 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
Nbr-RA 1..1878 69..1946 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-04 08:58:37 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9247-RA 18..2331 1..2315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:40:19 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
Nbr-RA 14..2327 1..2315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:08 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
Nbr-RA 14..2327 1..2315 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:41 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21160643..21161139 1819..2315 99 <- Minus
2L 21161198..21162177 839..1818 100 <- Minus
2L 21162233..21163070 1..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:41 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21160643..21161139 1819..2315 99 <- Minus
2L 21161198..21162177 839..1818 100 <- Minus
2L 21162233..21163070 1..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:41 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21160643..21161139 1819..2315 99 <- Minus
2L 21161198..21162177 839..1818 100 <- Minus
2L 21162233..21163070 1..838 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:40:19 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21160643..21161139 1819..2315 99 <- Minus
arm_2L 21161198..21162177 839..1818 100 <- Minus
arm_2L 21162233..21163070 1..838 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:38:20 Download gff for RE72821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21160643..21161139 1819..2315 99 <- Minus
2L 21161198..21162177 839..1818 100 <- Minus
2L 21162233..21163070 1..838 99   Minus

RE72821.hyp Sequence

Translation from 68 to 1945

> RE72821.hyp
MARKSHMYNAIPAGFESDEENMENLMSNLKIKRLEDITTGAGIDGCNFDA
TLDAKAEEFFKLFREKWNMYSKKKSPHLRQEFGRALMGHQDPLLLALKIF
ANCPDSSNIKTKSLSHFVLDTVCKLHKDFPHLGEGCDPNTSMIAFNFVKT
SGLLALNNAVIHAYSLRQIRDLLLPKLRELLDNGLYKEVTQWSISLQLTH
EFDMLELAFPLIAIEKLPLAEEYLDHATQQRLPFVKFLDSLLHKEKSVLE
LCEHLLDRYKNLKISHNVLSYRPMAKIVARLAKKYGFDDAVTPNYKFTKT
CSYLHYLYREYEKTRMNLASFREVVSVHAFNHELRTDFVKYLASAGAHSE
AIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPGKERCPSSRCDMY
LTMDLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCV
LQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLS
VLQRSLPLQLRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALT
DLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER
VSFIQAVIEKSIASNNFLRRGAHVK*

RE72821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Nbr-PA 625 CG9247-PA 1..625 1..625 3286 100 Plus

RE72821.pep Sequence

Translation from 68 to 1945

> RE72821.pep
MARKSHMYNAIPAGFESDEENMENLMSNLKIKRLEDITTGAGIDGCNFDA
TLDAKAEEFFKLFREKWNMYSKKKSPHLRQEFGRALMGHQDPLLLALKIF
ANCPDSSNIKTKSLSHFVLDTVCKLHKDFPHLGEGCDPNTSMIAFNFVKT
SGLLALNNAVIHAYSLRQIRDLLLPKLRELLDNGLYKEVTQWSISLQLTH
EFDMLELAFPLIAIEKLPLAEEYLDHATQQRLPFVKFLDSLLHKEKSVLE
LCEHLLDRYKNLKISHNVLSYRPMAKIVARLAKKYGFDDAVTPNYKFTKT
CSYLHYLYREYEKTRMNLASFREVVSVHAFNHELRTDFVKYLASAGAHSE
AIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPGKERCPSSRCDMY
LTMDLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCV
LQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLS
VLQRSLPLQLRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALT
DLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER
VSFIQAVIEKSIASNNFLRRGAHVK*

RE72821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15154-PA 627 GF15154-PA 1..627 1..625 2257 69.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21519-PA 625 GG21519-PA 1..625 1..625 3041 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13217-PA 632 GH13217-PA 5..628 8..622 2352 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Nbr-PA 625 CG9247-PA 1..625 1..625 3286 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14516-PA 625 GI14516-PA 5..622 8..623 2322 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25861-PA 625 GL25861-PA 1..622 1..624 2440 72.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21642-PA 625 GA21642-PA 1..622 1..624 2437 72.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23271-PA 625 GM23271-PA 1..625 1..625 3194 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21649-PA 422 GD21649-PA 1..422 204..625 2202 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16284-PA 621 GJ16284-PA 5..618 8..623 2348 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21051-PA 587 GK21051-PA 1..573 1..620 2025 63 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12998-PA 625 GE12998-PA 1..625 1..625 3023 90.9 Plus