BDGP Sequence Production Resources |
Search the DGRC for RE72821
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 728 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nbr-RA |
Protein status: | RE72821.pep: gold |
Sequenced Size: | 2330 |
Gene | Date | Evidence |
---|---|---|
CG9247-RA | 2011-07-18 | Manual selection by Sue Celniker |
2330 bp assembled on 2011-11-04
GenBank Submission: BT132751.1
> RE72821.complete GTCGATTGCATTTGCAATTGGCAATTGCACTTGCTTCGCTCTGCAGTGGC ACGGGAAACCCGTGAGAAATGGCACGCAAGAGCCACATGTACAACGCAAT ACCCGCCGGCTTTGAGTCGGACGAGGAGAACATGGAGAACCTAATGAGCA ACCTGAAGATCAAGCGCTTGGAGGACATCACGACAGGTGCTGGAATCGAC GGCTGTAACTTTGACGCCACCTTGGACGCAAAGGCGGAGGAGTTTTTTAA GCTGTTCCGCGAGAAGTGGAACATGTATAGCAAGAAAAAGTCGCCACATC TGCGCCAGGAATTTGGAAGGGCTTTAATGGGCCATCAGGATCCTTTGCTC CTGGCCCTGAAGATCTTCGCCAACTGCCCAGACAGCAGCAACATCAAGAC GAAGAGCTTGTCACATTTTGTGCTGGACACGGTTTGCAAGCTCCACAAGG ATTTCCCGCATCTTGGCGAGGGCTGTGATCCCAACACCAGCATGATAGCC TTTAACTTTGTCAAGACCTCCGGCTTGCTGGCCCTCAACAATGCTGTTAT CCATGCCTACAGTCTACGTCAGATCCGCGACCTACTGCTTCCCAAGTTGC GCGAACTCCTGGACAACGGGCTTTACAAAGAGGTCACCCAATGGTCCATC AGTCTGCAGTTGACGCACGAGTTCGACATGCTGGAACTGGCTTTCCCGCT GATTGCAATTGAGAAACTACCACTGGCCGAGGAATATCTGGACCATGCCA CACAGCAGAGGTTGCCCTTTGTCAAGTTCTTGGATTCGTTGCTGCACAAG GAGAAGTCGGTTTTAGAGCTCTGCGAGCATCTACTCGATCGGTACAAAAA TCTCAAAATTTCCCATAACGTGCTCAGCTATCGGCCTATGGCCAAGATTG TGGCGCGACTGGCCAAGAAGTATGGTTTTGACGACGCCGTCACGCCCAAC TATAAGTTCACGAAGACGTGCAGCTACTTGCATTACCTTTACCGCGAGTA CGAGAAGACGCGCATGAACCTGGCCAGTTTCCGGGAGGTTGTGAGCGTCC ATGCCTTTAACCACGAGCTGCGCACGGACTTCGTAAAGTATTTGGCCTCT GCTGGAGCTCATTCTGAAGCCATCTACTGGTACACGGAGTTCAATATTGA CCCGAAAGATTGTCCGTTGGAGATCGAGACGCAGGTATCGCAAAACGGTG CTGGAAAAGCGTCAGGCTGGGAATCCCCCGGCAAGGAACGCTGTCCTTCG AGTAGATGTGATATGTACCTGACCATGGACCTGCCCGACGAGTGCCTTAT CATTGTGAACAAGGCTGATGAGTTCGATCGTATGTTATACCATCTGCAGC AGGAGTGCGTCATATACCTGGATTCTGAATGGATGCAGAGCGTGTGCGGA GACAATCAGCTGTGCGTGCTACAGATCGCCACCGGCCACAATGTCTACCT GATCGATTGCCTGGCGCGGGAGAGCTTACGCTCGGAACACTGGCGCTTGC TGGGCGCGAATATCTTTAATAACGTGAACATCCGTAAGGTGGGGTTCTCT ATGGTCAGTGATCTCAGTGTATTGCAGCGGTCACTGCCCCTGCAACTGCG CCTTCAAATGCCTCACCACTACTTGGACCTTCGCAATCTCTGGTTGGAGT TAAAAAAGCAGCGCTTCGGCGTTGAACTTCCCTTCGGCAATGTTAACCGG GCAGGAGACGCCCTTACGGATCTCTCATTGGCATGCCTTGGCAAGAAACT GAACAAATCAAACCAGTGCTCAAACTGGGCCAATAGACCGCTGCGTCGCG AGCAGATTCTTTATGCAGCCATCGATGCGCGGTGTTTGATGCTGATCTAC AACACGCTCATTGAACGCGTGTCCTTCATACAAGCGGTTATCGAAAAGAG CATCGCCAGCAATAACTTTCTCAGGCGGGGTGCCCATGTTAAGTGATTGA GGAGCTGGCCTCTGTTATACCCATGCTCCTTTTGATGGATAGCGATTATC ACGAAGACGACAAAGGCGTTCGCCCAACATTTATTAAGTGCAAATGTTAT ATGTAGTTGCAAAGAGTATTTAACATATATTTAGTGACTAGCCAGGCAGC TGGGTTAGTGCCGAGTTAGGCAGTTTGTACACATGTTACAAATCAGAAGG AAACTATGTGACTGCGAGCAGGATATGAAAGAATGAATTTTATTACGTTA TGATTTCAAGCTCACTGTATCTCCATACTTTAAATACTTGCATTATTCCA ATTCGTAAATTCGCGTATTATTTGAATTCACGCATGATCAAAACTGAATA AAAGCAATGAATAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 21159703..21160682 | 1818..839 | 4900 | 100 | Minus |
chr2L | 23010047 | chr2L | 21160738..21161575 | 838..1 | 4175 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 21159150..21159647 | 2313..1816 | 2490 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21161198..21162177 | 1818..839 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 21162233..21163070 | 838..1 | 4175 | 99.9 | Minus |
2L | 23513712 | 2L | 21160645..21161142 | 2313..1816 | 2490 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21161198..21162177 | 1818..839 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 21162233..21163070 | 838..1 | 4175 | 99.8 | Minus |
2L | 23513712 | 2L | 21160645..21161142 | 2313..1816 | 2490 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 21159148..21159644 | 1819..2315 | 99 | <- | Minus |
chr2L | 21159703..21160682 | 839..1818 | 100 | <- | Minus |
chr2L | 21160738..21161575 | 1..838 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9247-RA | 1..1878 | 69..1946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nbr-RA | 1..1878 | 69..1946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nbr-RA | 1..1878 | 69..1946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9247-RA | 18..2331 | 1..2315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nbr-RA | 14..2327 | 1..2315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nbr-RA | 14..2327 | 1..2315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21160643..21161139 | 1819..2315 | 99 | <- | Minus |
2L | 21161198..21162177 | 839..1818 | 100 | <- | Minus |
2L | 21162233..21163070 | 1..838 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21160643..21161139 | 1819..2315 | 99 | <- | Minus |
2L | 21161198..21162177 | 839..1818 | 100 | <- | Minus |
2L | 21162233..21163070 | 1..838 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21160643..21161139 | 1819..2315 | 99 | <- | Minus |
2L | 21161198..21162177 | 839..1818 | 100 | <- | Minus |
2L | 21162233..21163070 | 1..838 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 21160643..21161139 | 1819..2315 | 99 | <- | Minus |
arm_2L | 21161198..21162177 | 839..1818 | 100 | <- | Minus |
arm_2L | 21162233..21163070 | 1..838 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21160643..21161139 | 1819..2315 | 99 | <- | Minus |
2L | 21161198..21162177 | 839..1818 | 100 | <- | Minus |
2L | 21162233..21163070 | 1..838 | 99 | Minus |
Translation from 68 to 1945
> RE72821.hyp MARKSHMYNAIPAGFESDEENMENLMSNLKIKRLEDITTGAGIDGCNFDA TLDAKAEEFFKLFREKWNMYSKKKSPHLRQEFGRALMGHQDPLLLALKIF ANCPDSSNIKTKSLSHFVLDTVCKLHKDFPHLGEGCDPNTSMIAFNFVKT SGLLALNNAVIHAYSLRQIRDLLLPKLRELLDNGLYKEVTQWSISLQLTH EFDMLELAFPLIAIEKLPLAEEYLDHATQQRLPFVKFLDSLLHKEKSVLE LCEHLLDRYKNLKISHNVLSYRPMAKIVARLAKKYGFDDAVTPNYKFTKT CSYLHYLYREYEKTRMNLASFREVVSVHAFNHELRTDFVKYLASAGAHSE AIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPGKERCPSSRCDMY LTMDLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCV LQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLS VLQRSLPLQLRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALT DLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER VSFIQAVIEKSIASNNFLRRGAHVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nbr-PA | 625 | CG9247-PA | 1..625 | 1..625 | 3286 | 100 | Plus |
Translation from 68 to 1945
> RE72821.pep MARKSHMYNAIPAGFESDEENMENLMSNLKIKRLEDITTGAGIDGCNFDA TLDAKAEEFFKLFREKWNMYSKKKSPHLRQEFGRALMGHQDPLLLALKIF ANCPDSSNIKTKSLSHFVLDTVCKLHKDFPHLGEGCDPNTSMIAFNFVKT SGLLALNNAVIHAYSLRQIRDLLLPKLRELLDNGLYKEVTQWSISLQLTH EFDMLELAFPLIAIEKLPLAEEYLDHATQQRLPFVKFLDSLLHKEKSVLE LCEHLLDRYKNLKISHNVLSYRPMAKIVARLAKKYGFDDAVTPNYKFTKT CSYLHYLYREYEKTRMNLASFREVVSVHAFNHELRTDFVKYLASAGAHSE AIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPGKERCPSSRCDMY LTMDLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCV LQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLS VLQRSLPLQLRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALT DLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER VSFIQAVIEKSIASNNFLRRGAHVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15154-PA | 627 | GF15154-PA | 1..627 | 1..625 | 2257 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21519-PA | 625 | GG21519-PA | 1..625 | 1..625 | 3041 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13217-PA | 632 | GH13217-PA | 5..628 | 8..622 | 2352 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nbr-PA | 625 | CG9247-PA | 1..625 | 1..625 | 3286 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14516-PA | 625 | GI14516-PA | 5..622 | 8..623 | 2322 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25861-PA | 625 | GL25861-PA | 1..622 | 1..624 | 2440 | 72.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21642-PA | 625 | GA21642-PA | 1..622 | 1..624 | 2437 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23271-PA | 625 | GM23271-PA | 1..625 | 1..625 | 3194 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21649-PA | 422 | GD21649-PA | 1..422 | 204..625 | 2202 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16284-PA | 621 | GJ16284-PA | 5..618 | 8..623 | 2348 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21051-PA | 587 | GK21051-PA | 1..573 | 1..620 | 2025 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12998-PA | 625 | GE12998-PA | 1..625 | 1..625 | 3023 | 90.9 | Plus |