Clone RE72832 Report

Search the DGRC for RE72832

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:728
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG3262-RC
Protein status:RE72832.pep: wuzgold
Sequenced Size:1010

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3262-RD 2009-06-01 Manual selection by Ken Wan

Clone Sequence Records

RE72832.complete Sequence

1010 bp assembled on 2009-08-05

GenBank Submission: BT089047.1

> RE72832.complete
GTAACAATGGAGCGTCTATTGATCAACACGATATGGCGCTCCTACGCAAC
AAAATTAACTGGGTCCCAGGTGAAGTTAATGGCGCGGGGATTGCCTAAAA
AGCAACCGATTATTGGAGTACAAGATATTATAGTCGTTGCCTCTGGAAAG
GGTGGTGTTGGAAAAAGCACCGTGGCAGCTTGGCAAAACTAGGAAAGCGA
GTAGGATTGCTGGACGGGGATATCTTCGGGCCTACTATTCCACTTCTCAT
GAATGTCCATGGTGAGCCGGTTGTGAACGATAAGAATTTGATGATCCCGC
CGCAAAACTACAATGTAAAGTGCTTGTCTATGGGCATGCTGACACCTGTA
GAGACCTCTGTTATCTGGCGAGGTCCTCTTGTAATGTCAGCAATACAACG
ACTGCTAAAAGGTACTGATTGGGGGCTTCTAGATGTCCTAGTTATAGATA
CTCCACCGGGCACTGGAGATGTACATCTCTCACTATCCCAGCATGCACCT
ATCACAGGGGTTATCCTGGTAACAACACCTCATACTGCAGCTGTTCAGGT
GACCTTGAAAGGTGCAAGCATGTACGAAAAGTTAAATGTTCCTATCTTTG
GCGTAGTAGAGAACATGAAGTACACCATTTGTCAGAACTGTAATCAACGA
TTGGAGTTTTTTAAAGACAGCCGTATAAGTTCTCTACCGCGCAAGCTAAT
TTCTCTTCCGTTAGACTCACGAATAGCGGATAGCAACGAGAGTGGAGTGC
CTGTTGTAATAAAATATCCGGACAGCAAGTACTCTTATCTATTTACCCAA
TTGGCTGAGGAGATTACACAAATACTTAACGAACAAAGATGTAATCAAAA
TCAAAATAACAGTGCACATTAAAAAAAAATTTGTGTATATCAAAAATTCT
TATTACTTACATTTGTTATGCTGTACCGCTAAAACCAATAAAGTTATCAG
GGGAAAGGGACTGTTGTTTCGTTTCCCGCATTTACATTAAACAACAAAAA
AAAAAAAAAA

RE72832.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-RC 1176 CG3262-RC 54..1048 1..996 4940 99.8 Plus
CG3262-RD 1192 CG3262-RD 244..1064 175..996 4070 99.8 Plus
CG3262-RD 1192 CG3262-RD 54..231 1..178 890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22238697..22239516 175..995 4055 99.9 Plus
chr2L 23010047 chr2L 22238457..22238634 1..178 890 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22240166..22240986 175..996 4060 99.9 Plus
2L 23513712 2L 22239926..22240103 1..178 890 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22240166..22240986 175..996 4070 99.8 Plus
2L 23513712 2L 22239926..22240103 1..178 890 100 Plus
Blast to na_te.dros performed 2019-03-15 21:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1498..1536 438..400 114 76.9 Minus

RE72832.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:10:31 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22238457..22238634 1..178 100 -> Plus
chr2L 22238701..22239516 179..995 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:45 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 1..165 7..171 100 -> Plus
CG3262-RD 178..882 172..872 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:54:40 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 1..165 7..171 100 -> Plus
CG3262-RD 178..882 172..872 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:38:48 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 1..165 7..171 100 -> Plus
CG3262-RD 178..882 172..872 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:44:36 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 1..165 7..171 100 -> Plus
CG3262-RD 178..882 172..872 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 09:29:53 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RC 21..910 1..891 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:54:39 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RC 21..910 1..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:38:48 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RE 11..187 1..178 99 -> Plus
CG3262-RE 205..1020 179..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:36 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RE 11..187 1..178 99 -> Plus
CG3262-RE 205..1020 179..995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:31 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22239926..22240103 1..178 100 -> Plus
2L 22240170..22240985 179..995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:31 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22239926..22240103 1..178 100 -> Plus
2L 22240170..22240985 179..995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:31 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22239926..22240103 1..178 100 -> Plus
2L 22240170..22240985 179..995 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:38:48 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22239926..22240103 1..178 100 -> Plus
arm_2L 22240170..22240985 179..995 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:46:23 Download gff for RE72832.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22240170..22240985 179..995 99   Plus
2L 22239926..22240103 1..178 100 -> Plus

RE72832.pep Sequence

Translation from 6 to 191

> RE72832.pep
MERLLINTIWRSYATKLTGSQVKLMARGLPKKQPIIGVQDIIVVASGKGG
VGKSTVAAWQN*

RE72832.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22737-PA 310 GF22737-PA 1..34 25..58 136 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21464-PA 294 GG21464-PA 1..58 1..58 243 84.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13628-PA 292 GH13628-PA 3..57 4..58 177 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-PE 293 CG3262-PE 1..57 1..57 281 100 Plus
CG3262-PD 293 CG3262-PD 1..57 1..57 281 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11769-PA 297 GI11769-PA 3..57 4..58 173 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21144-PA 299 GL21144-PA 9..64 3..58 179 64.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17025-PA 299 GA17025-PA 9..64 3..58 179 64.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18803-PA 293 GM18803-PA 1..57 1..57 265 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21613-PA 293 GD21613-PA 1..57 1..57 258 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13135-PA 298 GJ13135-PA 3..57 4..58 196 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23989-PA 303 GK23989-PA 10..65 3..58 186 69.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12953-PA 293 GE12953-PA 1..58 1..58 251 86.2 Plus

RE72832.hyp Sequence

Translation from 248 to 871

> RE72832.hyp
MNVHGEPVVNDKNLMIPPQNYNVKCLSMGMLTPVETSVIWRGPLVMSAIQ
RLLKGTDWGLLDVLVIDTPPGTGDVHLSLSQHAPITGVILVTTPHTAAVQ
VTLKGASMYEKLNVPIFGVVENMKYTICQNCNQRLEFFKDSRISSLPRKL
ISLPLDSRIADSNESGVPVVIKYPDSKYSYLFTQLAEEITQILNEQRCNQ
NQNNSAH*

RE72832.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-PF 207 CG3262-PF 1..207 1..207 1077 100 Plus
CG3262-PE 293 CG3262-PE 87..293 1..207 1077 100 Plus
CG3262-PD 293 CG3262-PD 87..293 1..207 1077 100 Plus
CG17904-PA 311 CG17904-PA 127..285 22..166 229 35.8 Plus
CG4858-PA 260 CG4858-PA 75..258 19..193 224 31 Plus