BDGP Sequence Production Resources |
Search the DGRC for RE73195
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 731 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | rl-RA |
Protein status: | RE73195.pep: gold |
Sequenced Size: | 1159 |
Gene | Date | Evidence |
---|---|---|
rl-RA | 2010-01-15 | Manual selection by Sue Celniker |
1159 bp assembled on 2010-02-11
GenBank Submission: BT120325.1
> RE73195.complete ATTTGTCTAAAGAGTAAAAAAAAAAAGAAACGTTAGTCATGGAGGAATTT AATTCGAGCGGATCAGTAGTTAATGGTACAGGATCTACGGAAGTTCCTCA ATCTAATGCTGAAGTTATAAGGGGACAAATATTTGAAGTTGGTCCTAGGT ATATTAAACTCGCCTATATAGGTGAAGGAGCTTATGGCATGGTTGTGTCT GCGGATGACACGCTAACAAACCAAAGAGTTGCAATAAAAAAAATATCGCC CTTTGAACACCAAACTTATTGTCAAAGGACTCTCAGAGAAATAACCATAT TGACCAGATTTAAACATGAAAACATTATTGATATTCGAGATATTCTTCGA GTTGATAGCATAGACCAAATGAGAGATGTTTATATTGTACAGTGTTTGAT GGAGACTGATTTGTATAAACTACTTAAAACACAGGTAATGGTGCTCCCTG ATATTTGGTTAAAATTTATTGAAAGAATAACTACCATTGATATGTGGTGT ATTATCTTGGCCATTACTCCAAATACCAAGACTGAGTACAATTGTAGGTT GTCGGACATTTTCAATTATGGAAGTGATTCGCGTTATGCTTTCATGCGGG CTTTAAAATGATCTGATCAATGTTTAAAGAAGAATGTGGATATTCTCTTT TTAACTATTTTTACCAGAAATAACTATACTTTAACCTATAATATCTTTAT AAAAAAATAATAACCATAATCAATGGTAAAAGAATGTTAGTCACACATAA TTTAAACAGCTTAAGAAGAAATTTAGCATAAGAAACTGTAAGAGATCTAA GTGTGTGAAGGTATGCATATTAACATGAATTGAGAACGTTTATTTTTCTT CACAAAACAGCAACACTGTCGAGCCACGCAGCCGGCATCATTAAACAAGA CCAATTGTAAAAGTTATGGTTAACGTAAATCAGTCATTGTTTTCCTCTTG CTCATTTATCTAAGCAAACGTTTGCATACATACATTCTTATCTTTACGCT GAACTTTATACGCAGCCAAAGACAGACAAATTCTCTCAGTTTTGAGGTGA GTTGTCTACATACGCCGCCTGAATATATACTTTTCTCTCTGGCTTGACCC TTTCGTTATCAAATAAACTAAAATAAACCAAGAATATTATCCGAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2RHet | 3288813 | chr2RHet | 207078..207895 | 324..1141 | 4090 | 100 | Plus |
chr2RHet | 3288813 | chr2RHet | 199014..199187 | 25..198 | 870 | 100 | Plus |
chr2RHet | 3288813 | chr2RHet | 203381..203507 | 197..323 | 635 | 100 | Plus |
chr2R | 21145070 | chr2R | 499953..500037 | 950..866 | 290 | 89.4 | Minus |
chrU | 10048995 | chrU | 1089291..1089375 | 959..875 | 230 | 84.7 | Minus |
chr2L | 23010047 | chr2L | 22536417..22536487 | 889..959 | 220 | 87.3 | Plus |
chr2R | 21145070 | chr2R | 446663..446714 | 1089..1140 | 200 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 1080331..1081156 | 324..1149 | 4100 | 99.8 | Plus |
2R | 25286936 | 2R | 1072268..1072441 | 25..198 | 870 | 100 | Plus |
2R | 25286936 | 2R | 1076635..1076761 | 197..323 | 635 | 100 | Plus |
2R | 25286936 | 2R | 4612345..4612429 | 950..866 | 290 | 89.4 | Minus |
2R | 25286936 | 2R | 1512964..1513048 | 959..875 | 230 | 84.7 | Minus |
2L | 23513712 | 2L | 22645196..22645266 | 889..959 | 220 | 87.3 | Plus |
2R | 25286936 | 2R | 4559056..4559107 | 1089..1140 | 200 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 1080331..1081156 | 324..1149 | 4100 | 99.7 | Plus |
2R | 25260384 | 2R | 1072268..1072441 | 25..198 | 870 | 100 | Plus |
2R | 25260384 | 2R | 1076635..1076761 | 197..323 | 635 | 100 | Plus |
2R | 25260384 | 2R | 4613544..4613628 | 950..866 | 290 | 89.4 | Minus |
2R | 25260384 | 2R | 1512964..1513048 | 959..875 | 230 | 84.7 | Minus |
2L | 23513712 | 2L | 22645196..22645266 | 889..959 | 220 | 87.3 | Plus |
2R | 25260384 | 2R | 4560255..4560306 | 1089..1140 | 200 | 92.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2RHet | 198769..198791 | 1..24 | 95 | -> | Plus |
chr2RHet | 199014..199185 | 25..196 | 100 | -> | Plus |
chr2RHet | 203381..203507 | 197..323 | 100 | -> | Plus |
chr2RHet | 207078..207897 | 324..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 1..573 | 39..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 1..573 | 39..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 1..573 | 39..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 1..573 | 39..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 66..88 | 1..24 | 95 | -> | Plus |
rl-RA | 311..975 | 25..689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 66..88 | 1..24 | 95 | -> | Plus |
rl-RA | 311..975 | 25..689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 49..71 | 1..24 | 95 | -> | Plus |
rl-RA | 294..1412 | 25..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rl-RA | 49..71 | 1..24 | 95 | -> | Plus |
rl-RA | 294..1412 | 25..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1072268..1072439 | 25..196 | 100 | -> | Plus |
2R | 1076635..1076761 | 197..323 | 100 | -> | Plus |
2R | 1080331..1081150 | 324..1143 | 99 | Plus | |
2R | 1072023..1072045 | 1..24 | 95 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1072268..1072439 | 25..196 | 100 | -> | Plus |
2R | 1076635..1076761 | 197..323 | 100 | -> | Plus |
2R | 1080331..1081150 | 324..1143 | 99 | Plus | |
2R | 1072023..1072045 | 1..24 | 95 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1072268..1072439 | 25..196 | 100 | -> | Plus |
2R | 1076635..1076761 | 197..323 | 100 | -> | Plus |
2R | 1080331..1081150 | 324..1143 | 99 | Plus | |
2R | 1072023..1072045 | 1..24 | 95 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2RHet | 198737..198759 | 1..24 | 95 | -> | Plus |
2RHet | 198982..199153 | 25..196 | 100 | -> | Plus |
2RHet | 203349..203475 | 197..323 | 100 | -> | Plus |
2RHet | 207045..207864 | 324..1143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1080331..1081150 | 324..1143 | 99 | Plus | |
2R | 1072023..1072045 | 1..24 | 95 | -> | Plus |
2R | 1072268..1072439 | 25..196 | 100 | -> | Plus |
2R | 1076635..1076761 | 197..323 | 100 | -> | Plus |
Translation from 38 to 610
> RE73195.pep MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQVMVLPDIWLKFIERITTI DMWCIILAITPNTKTEYNCRLSDIFNYGSDSRYAFMRALK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13942-PA | 229 | GF13942-PA | 1..82 | 51..132 | 417 | 98.8 | Plus |
Dana\GF23057-PA | 365 | GF23057-PA | 18..123 | 32..132 | 193 | 38.7 | Plus |
Dana\GF14126-PA | 371 | GF14126-PA | 17..117 | 32..130 | 178 | 38.6 | Plus |
Dana\GF18893-PA | 366 | GF18893-PA | 19..126 | 32..134 | 177 | 37 | Plus |
Dana\GF20951-PA | 352 | GF20951-PA | 11..111 | 37..137 | 164 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23119-PA | 539 | GG23119-PA | 1..132 | 1..132 | 680 | 96.2 | Plus |
Dere\GG23876-PA | 361 | GG23876-PA | 14..119 | 32..132 | 192 | 38.7 | Plus |
Dere\GG23964-PA | 372 | GG23964-PA | 18..118 | 32..130 | 178 | 38.6 | Plus |
Dere\GG12369-PA | 366 | GG12369-PA | 19..124 | 32..132 | 165 | 36.8 | Plus |
Dere\GG18504-PA | 353 | GG18504-PA | 11..109 | 37..136 | 161 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13352-PA | 378 | GH13352-PA | 22..134 | 20..132 | 570 | 95.6 | Plus |
Dgri\GH11110-PA | 361 | GH11110-PA | 14..119 | 32..132 | 187 | 37.7 | Plus |
Dgri\GH13559-PA | 369 | GH13559-PA | 15..115 | 32..130 | 180 | 39.6 | Plus |
Dgri\GH19092-PA | 366 | GH19092-PA | 19..124 | 32..132 | 171 | 38.7 | Plus |
Dgri\GH14986-PA | 546 | GH14986-PA | 162..248 | 44..129 | 159 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rl-PA | 190 | CG12559-PA | 1..190 | 1..190 | 980 | 100 | Plus |
rl-PI | 376 | CG12559-PI | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PC | 376 | CG12559-PC | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PD | 376 | CG12559-PD | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PE | 376 | CG12559-PE | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PG | 331 | CG12559-PG | 6..87 | 51..132 | 403 | 96.3 | Plus |
p38b-PA | 365 | CG7393-PA | 18..123 | 32..132 | 189 | 38.7 | Plus |
bsk-PE | 372 | CG5680-PE | 18..118 | 32..130 | 179 | 38.6 | Plus |
bsk-PF | 372 | CG5680-PF | 18..118 | 32..130 | 179 | 38.6 | Plus |
bsk-PB | 372 | CG5680-PB | 18..118 | 32..130 | 179 | 38.6 | Plus |
p38a-PC | 366 | CG5475-PC | 19..124 | 32..132 | 165 | 36.8 | Plus |
p38a-PB | 366 | CG5475-PB | 19..124 | 32..132 | 165 | 36.8 | Plus |
p38a-PA | 366 | CG5475-PA | 19..124 | 32..132 | 165 | 36.8 | Plus |
Cdk7-PA | 353 | CG3319-PA | 11..115 | 37..142 | 164 | 40.9 | Plus |
nmo-PC | 414 | CG7892-PC | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PB | 414 | CG7892-PB | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PA | 414 | CG7892-PA | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PH | 430 | CG7892-PH | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PG | 430 | CG7892-PG | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PF | 430 | CG7892-PF | 46..132 | 44..129 | 158 | 35.6 | Plus |
nmo-PE | 430 | CG7892-PE | 46..132 | 44..129 | 158 | 35.6 | Plus |
Erk7-PC | 451 | CG32703-PC | 24..129 | 31..144 | 148 | 37.1 | Plus |
Erk7-PB | 916 | CG32703-PB | 24..129 | 31..144 | 148 | 37.1 | Plus |
Erk7-PA | 916 | CG32703-PA | 24..129 | 31..144 | 148 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18259-PA | 339 | GI18259-PA | 19..131 | 20..132 | 569 | 95.6 | Plus |
Dmoj\GI18232-PA | 361 | GI18232-PA | 14..119 | 32..132 | 193 | 38.7 | Plus |
Dmoj\GI10639-PA | 366 | GI10639-PA | 15..115 | 32..130 | 179 | 39.6 | Plus |
Dmoj\GI23428-PA | 366 | GI23428-PA | 19..124 | 32..132 | 174 | 38.7 | Plus |
Dmoj\GI15304-PA | 349 | GI15304-PA | 11..109 | 37..136 | 163 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20446-PA | 375 | GL20446-PA | 1..132 | 1..132 | 599 | 85.6 | Plus |
Dper\GL21224-PA | 343 | GL21224-PA | 14..119 | 32..132 | 193 | 38.7 | Plus |
Dper\GL18977-PA | 371 | GL18977-PA | 17..117 | 32..130 | 175 | 38.6 | Plus |
Dper\GL24141-PA | 366 | GL24141-PA | 19..124 | 32..132 | 165 | 35.8 | Plus |
Dper\GL14332-PA | 350 | GL14332-PA | 9..109 | 35..136 | 163 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20320-PA | 365 | GA20320-PA | 18..123 | 32..132 | 193 | 38.7 | Plus |
Dpse\GA18909-PA | 366 | GA18909-PA | 19..124 | 32..132 | 165 | 35.8 | Plus |
Dpse\GA17354-PA | 350 | GA17354-PA | 9..109 | 35..136 | 163 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16932-PA | 340 | GM16932-PA | 1..132 | 1..132 | 679 | 97.7 | Plus |
Dsec\GM15179-PA | 365 | GM15179-PA | 18..123 | 32..132 | 191 | 38.7 | Plus |
Dsec\GM11912-PA | 372 | GM11912-PA | 18..118 | 32..130 | 178 | 38.6 | Plus |
Dsec\GM23508-PA | 366 | GM23508-PA | 19..124 | 32..132 | 168 | 36.8 | Plus |
Dsec\GM12652-PA | 353 | GM12652-PA | 11..109 | 37..136 | 161 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23919-PA | 365 | GD23919-PA | 18..123 | 32..132 | 191 | 38.7 | Plus |
Dsim\GD22289-PA | 372 | GD22289-PA | 18..118 | 32..130 | 178 | 38.6 | Plus |
Dsim\GD18318-PA | 366 | GD18318-PA | 19..124 | 32..132 | 168 | 36.8 | Plus |
Dsim\GD24595-PA | 353 | GD24595-PA | 11..109 | 37..136 | 161 | 41.3 | Plus |
Dsim\GD14046-PA | 430 | GD14046-PA | 46..132 | 44..129 | 159 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17518-PA | 375 | GJ17518-PA | 1..131 | 1..132 | 570 | 85.6 | Plus |
Dvir\GJ18140-PA | 361 | GJ18140-PA | 14..119 | 32..132 | 186 | 37.7 | Plus |
Dvir\GJ21884-PA | 369 | GJ21884-PA | 15..115 | 32..130 | 180 | 39.6 | Plus |
Dvir\GJ16576-PA | 352 | GJ16576-PA | 11..109 | 37..136 | 163 | 42.3 | Plus |
Dvir\GJ13897-PA | 519 | GJ13897-PA | 135..221 | 44..129 | 159 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18192-PA | 364 | GK18192-PA | 14..119 | 32..132 | 193 | 38.7 | Plus |
Dwil\GK23361-PA | 184 | GK23361-PA | 50..88 | 95..133 | 190 | 94.9 | Plus |
Dwil\GK18964-PA | 352 | GK18964-PA | 11..112 | 29..132 | 185 | 38.1 | Plus |
Dwil\GK12444-PA | 371 | GK12444-PA | 17..117 | 32..130 | 174 | 38.6 | Plus |
Dwil\GK20588-PA | 520 | GK20588-PA | 136..222 | 44..129 | 159 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11327-PA | 376 | GE11327-PA | 1..132 | 1..132 | 681 | 97.7 | Plus |
Dyak\GE18678-PA | 365 | GE18678-PA | 18..123 | 32..132 | 191 | 38.7 | Plus |
Dyak\GE26274-PA | 372 | GE26274-PA | 18..118 | 32..130 | 178 | 38.6 | Plus |
Dyak\GE16821-PA | 353 | GE16821-PA | 11..109 | 37..136 | 161 | 41.3 | Plus |
Dyak\GE10824-PA | 366 | GE10824-PA | 19..124 | 32..132 | 161 | 35.8 | Plus |
Translation from 38 to 610
> RE73195.hyp MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQVMVLPDIWLKFIERITTI DMWCIILAITPNTKTEYNCRLSDIFNYGSDSRYAFMRALK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rl-PA | 190 | CG12559-PA | 1..190 | 1..190 | 980 | 100 | Plus |
rl-PI | 376 | CG12559-PI | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PC | 376 | CG12559-PC | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PD | 376 | CG12559-PD | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PE | 376 | CG12559-PE | 1..132 | 1..132 | 670 | 100 | Plus |