BDGP Sequence Production Resources |
Search the DGRC for RE73235
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 732 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SelR-RA |
Protein status: | RE73235.pep: gold |
Preliminary Size: | 1023 |
Sequenced Size: | 1042 |
Gene | Date | Evidence |
---|---|---|
CG6584 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6584 | 2002-06-10 | Blastp of sequenced clone |
CG6584 | 2003-01-01 | Sim4 clustering to Release 3 |
SelR | 2008-04-29 | Release 5.5 accounting |
SelR | 2008-08-15 | Release 5.9 accounting |
SelR | 2008-12-18 | 5.12 accounting |
1042 bp (1042 high quality bases) assembled on 2002-06-10
GenBank Submission: AY070627
> RE73235.complete GTTGCCTATCATCCAGCATTCGATTGGCAACGCGAGCCAGCCAGGTGTTT GATTTTCATCGCGTGCAGCTGTTTTCCCAAGCAGCTTTTTTTGTATTAGT TTTTAATTTTCCACCGCTGCGTAACATTGCGACGCACGCTTGTTTTCGCC CGCGTTTGGCGCATTCATAAACAAAAGGCCAAAAATAGAATCAGCACCAT TTAGAGCGCTATTCAGCAGATTCACGCCAAGACAGCGACAATCCGGACAA AAGGTATTCCGGACCAGCAGCGACTATGGATAACAAGAGCGAGAAGGTTA CGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAG GTTACCCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAA ACACTACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGT TCAGCTCGGAGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAAC GATGTCCTAGACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACC AGAACGTATACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGG GTCACGTCTTCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATC AATTCCGCCTCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCC GCCCGTGGCCACGCCCACCGCGGCGCCCATTGCCCAGCAGTGATGCCGAG GATCAACCGCCAAACGGAGGAGGCAAGCCTCAGAGTGTCGTTGCTGTTAA GAAATTTTTCTACGTGTACTTTCTAACTTTCCGCAAATGTGGCCAATTTT AGCTCGTAGTCAAGTCAATCGCCCCTCTGTTTGTGTAAATAGCTAATGTT TTGGTTCGAAATTTGTTCGTTAATTTATACAAACCCAAATACCGAATACT CTGTAACCCCACACATTCAACACAGTACTAATTTTAAAGTGAGCGCGCTA AATAAACGTGTGTTTTTTACAATAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-RA | 1161 | SelR-RA | 8..1032 | 1..1025 | 5125 | 100 | Plus |
SelR-RI | 1013 | SelR-RI | 217..1009 | 233..1025 | 3965 | 100 | Plus |
SelR-RB | 1208 | SelR-RB | 19..570 | 1..552 | 2760 | 100 | Plus |
SelR-RB | 1208 | SelR-RB | 600..1076 | 549..1025 | 2385 | 100 | Plus |
SelR-RI | 1013 | SelR-RI | 1..219 | 1..219 | 1095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6688891..6689367 | 1025..549 | 2385 | 100 | Minus |
chr3R | 27901430 | chr3R | 6693976..6694194 | 219..1 | 1095 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692344..6692516 | 389..217 | 865 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692066..6692235 | 552..383 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10863353..10863829 | 1025..549 | 2385 | 100 | Minus |
3R | 32079331 | 3R | 10868439..10868657 | 219..1 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 389..217 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866529..10866698 | 552..383 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10604184..10604660 | 1025..549 | 2385 | 100 | Minus |
3R | 31820162 | 3R | 10609270..10609488 | 219..1 | 1095 | 100 | Minus |
3R | 31820162 | 3R | 10607638..10607810 | 389..217 | 865 | 100 | Minus |
3R | 31820162 | 3R | 10607360..10607529 | 552..383 | 850 | 100 | Minus |
3R | 31820162 | 3R | 10606387..10606449 | 623..561 | 165 | 84.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6688890..6689363 | 553..1026 | 99 | <- | Minus |
chr3R | 6692066..6692230 | 388..552 | 100 | <- | Minus |
chr3R | 6692346..6692513 | 220..387 | 100 | <- | Minus |
chr3R | 6693976..6694194 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RC | 58..594 | 207..743 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RC | 58..594 | 207..743 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RC | 58..594 | 207..743 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RC | 58..594 | 207..743 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RA | 1..1025 | 1..1026 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RA | 1..1025 | 1..1026 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RA | 1..1008 | 16..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RA | 1..1025 | 1..1026 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RA | 1..1008 | 16..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10866529..10866693 | 388..552 | 100 | <- | Minus |
3R | 10866809..10866976 | 220..387 | 100 | <- | Minus |
3R | 10868439..10868657 | 1..219 | 100 | Minus | |
3R | 10863352..10863825 | 553..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10866529..10866693 | 388..552 | 100 | <- | Minus |
3R | 10866809..10866976 | 220..387 | 100 | <- | Minus |
3R | 10868439..10868657 | 1..219 | 100 | Minus | |
3R | 10863352..10863825 | 553..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10866529..10866693 | 388..552 | 100 | <- | Minus |
3R | 10866809..10866976 | 220..387 | 100 | <- | Minus |
3R | 10868439..10868657 | 1..219 | 100 | Minus | |
3R | 10863352..10863825 | 553..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6694161..6694379 | 1..219 | 100 | Minus | |
arm_3R | 6689074..6689547 | 553..1026 | 99 | <- | Minus |
arm_3R | 6692251..6692415 | 388..552 | 100 | <- | Minus |
arm_3R | 6692531..6692698 | 220..387 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10604183..10604656 | 553..1026 | 99 | <- | Minus |
3R | 10607360..10607524 | 388..552 | 100 | <- | Minus |
3R | 10607640..10607807 | 220..387 | 100 | <- | Minus |
3R | 10609270..10609488 | 1..219 | 100 | Minus |
Translation from 275 to 742
> RE73235.pep MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPERIRTEVR CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPATSSPPVATPTAA PIAQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16176-PA | 251 | GF16176-PA | 42..251 | 1..155 | 731 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17257-PA | 238 | GG17257-PA | 42..238 | 1..155 | 782 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18739-PA | 200 | GH18739-PA | 1..200 | 1..155 | 678 | 66.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PI | 155 | CG6584-PI | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PA | 155 | CG6584-PA | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 43..197 | 1..155 | 842 | 100 | Plus |
SelR-PB | 166 | CG6584-PB | 1..166 | 1..155 | 820 | 93.4 | Plus |
SelR-PE | 208 | CG6584-PE | 43..208 | 1..155 | 820 | 93.4 | Plus |
SelR-PH | 150 | CG6584-PH | 1..147 | 1..141 | 689 | 85.7 | Plus |
SelR-PJ | 192 | CG6584-PJ | 43..189 | 1..141 | 689 | 85.7 | Plus |
SelR-PG | 157 | CG6584-PG | 1..154 | 1..141 | 671 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24656-PA | 211 | GI24656-PA | 1..211 | 1..155 | 682 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12062-PA | 205 | GL12062-PA | 1..205 | 1..155 | 667 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19702-PD | 156 | GA19702-PD | 1..156 | 1..155 | 732 | 89.1 | Plus |
Dpse\GA19702-PE | 203 | GA19702-PE | 37..203 | 1..155 | 715 | 83.2 | Plus |
Dpse\GA19702-PB | 167 | GA19702-PB | 1..167 | 1..155 | 710 | 83.2 | Plus |
Dpse\GA19702-PF | 148 | GA19702-PF | 1..141 | 1..141 | 666 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26142-PA | 250 | GM26142-PA | 43..250 | 1..155 | 764 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20695-PA | 251 | GD20695-PA | 43..251 | 1..155 | 742 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24030-PA | 200 | GJ24030-PA | 1..200 | 1..155 | 696 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13287-PA | 209 | GK13287-PA | 1..138 | 1..138 | 662 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24659-PA | 252 | GE24659-PA | 45..252 | 1..155 | 773 | 73.6 | Plus |
Translation from 275 to 742
> RE73235.hyp MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPERIRTEVR CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPATSSPPVATPTAA PIAQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PI | 155 | CG6584-PI | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PA | 155 | CG6584-PA | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 43..197 | 1..155 | 842 | 100 | Plus |
SelR-PB | 166 | CG6584-PB | 1..166 | 1..155 | 820 | 93.4 | Plus |
SelR-PE | 208 | CG6584-PE | 43..208 | 1..155 | 820 | 93.4 | Plus |