Clone RE73276 Report

Search the DGRC for RE73276

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:732
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG43105-RA
Protein status:RE73276.pep: wuzgold
Sequenced Size:809

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8169 2003-01-01 Sim4 clustering to Release 3
dup 2008-04-29 Release 5.5 accounting

Clone Sequence Records

RE73276.complete Sequence

809 bp (809 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003757

> RE73276.complete
AGTTCCAAAATGCAGCTCATCGTGAAATTACTGATTGTCCTTTTGGCATT
ATTTGCTGTTCTTTATGGAGAAGTAAAACATCCACAAAGATCCTGGAGCC
ACCTTCCATGGCGGTAAATTAAGTGGCGTGAAAATTAGATACAAAAGATT
CAACTGTAGTTGTTCTTGATGTCTTATTAAAAAGTGAAATACTTTTGACT
TGTGCAAAAAACTCGAACTTGATAGTTTTTTTGCGCAATATAATACTTAT
ATACAAAGGCGACAGCGCCCTCTAGCGCTTTTCATTTTACAATAATGCGG
GACTATAGCTAATCCCATTGTCCCAGCTGCCAAGTACCATATTCAAAAGA
TCTGGAAATTCGGGAACCGGCTGAGAGTGGAAACTTTTGGATGCCGTGGA
GAGGCCCTGATACGGAATGTGTCATCCAAGTCTACTGATGTGGCGTATTT
ATTCCCTTAAGCCCACATCCAAATTCTTGGAGTTCAGGATCAAGAGGAGA
TACGGCCTGACTCGTTGGCATCCGCAGTTTGATTTGGAGAGCTGTCCCCT
TTGCCCCAGTCGCCCAATGTCGAGAAATTCTCCTCAGACAAGGCTATTCT
ATCTAACGCTTGTAGGCCAGGTTGAAGGCGAACAAACAAGTAAGTTCTAA
CTATTTTTACAATTCCACGTACGGCAAGCACATAGACAACCAGGATTGGA
TGCATCGCTTTCACCCATGGAATCATGAAATGCGTAATTTTTAGACTAAA
TTAAATGTTGAACCACGTTAAATAAATAAATATTTGCCCTGGAAATAATA
AAAAAAAAA

RE73276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
DMG6-MB6.chr2R.20.008.b 895 DMG6-MB6.chr2R.20.008.b 102..895 1..794 3970 100 Plus
DMG6-MB6.chr2R.20.008.a 320 DMG6-MB6.chr2R.20.008.a 102..320 1..219 1095 100 Plus
dup-RA 3195 dup-RA 2054..2125 539..610 225 87.5 Plus
dup-RA 3195 dup-RA 3083..3130 755..802 180 91.6 Plus
dup-RA 3195 dup-RA 2006..2046 507..547 175 95.1 Plus
dup-RA 3195 dup-RA 2933..3012 647..726 160 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11262023..11262789 799..33 3670 98.6 Minus
chr2R 21145070 chr2R 11263097..11263320 470..247 1060 98.2 Minus
chr2R 21145070 chr2R 11261252..11261416 612..448 690 94.5 Minus
chr2R 21145070 chr2R 11263380..11263553 206..33 525 86.8 Minus
chr2R 21145070 chr2R 11259141..11259359 323..117 395 80.8 Minus
chr2R 21145070 chr2R 11263011..11263082 799..728 315 95.8 Minus
chr2R 21145070 chr2R 11260672..11260727 204..149 235 94.6 Minus
chr2R 21145070 chr2R 11261079..11261123 799..755 225 100 Minus
chr2R 21145070 chr2R 11264766..11264837 610..539 225 87.5 Minus
chr2R 21145070 chr2R 11261447..11261508 443..382 220 90.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15374845..15375612 800..33 3840 100 Minus
2R 25286936 2R 15375920..15376184 470..206 1265 98.5 Minus
2R 25286936 2R 15374065..15374231 612..448 635 93.4 Minus
2R 25286936 2R 15376222..15376395 206..33 540 87.4 Minus
2R 25286936 2R 15371947..15372165 323..117 410 81.3 Minus
2R 25286936 2R 15375833..15375905 800..728 320 95.9 Minus
2R 25286936 2R 15374262..15374371 443..327 310 86.3 Minus
2R 25286936 2R 15373889..15373934 800..755 230 100 Minus
2R 25286936 2R 15373482..15373535 204..151 225 94.4 Minus
2R 25286936 2R 15377614..15377685 610..539 225 87.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15376044..15376811 800..33 3840 100 Minus
2R 25260384 2R 15377104..15377383 486..206 1275 97.5 Minus
2R 25260384 2R 15375264..15375430 612..448 645 93.4 Minus
2R 25260384 2R 15377421..15377535 206..92 515 96.5 Minus
2R 25260384 2R 15373275..15373364 206..117 360 93.3 Minus
2R 25260384 2R 15377032..15377104 800..728 320 95.8 Minus
2R 25260384 2R 15375461..15375536 443..368 290 92.1 Minus
2R 25260384 2R 15373146..15373240 323..230 270 87.3 Minus
2R 25260384 2R 15375088..15375133 800..755 230 100 Minus
2R 25260384 2R 15378813..15378884 610..539 225 87.5 Minus
2R 25260384 2R 15374681..15374734 204..151 225 94.4 Minus
2R 25260384 2R 15377808..15377855 802..755 180 91.6 Minus
2R 25260384 2R 15378892..15378932 547..507 175 95.1 Minus
2R 25260384 2R 15377649..15377681 33..1 165 100 Minus
2R 25260384 2R 15376866..15376898 33..1 165 100 Minus
2R 25260384 2R 15377926..15378005 726..647 160 80 Minus
2R 25260384 2R 15375900..15375929 30..1 150 100 Minus
2R 25260384 2R 15375534..15375570 363..327 140 91.8 Minus
Blast to na_te.dros performed 2019-03-16 23:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 42..97 725..782 114 69 Plus

RE73276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:41:00 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11262023..11262788 34..799 98 <- Minus
chr2R 11262844..11262876 1..33 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:36:34 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:14 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
CG43105-RB 1..234 417..650 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 18:22:32 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 17:42:22 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:54:48 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 20:04:44 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:13 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
CG43105-RB 1..799 1..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 18:22:32 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 17:42:22 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:54:48 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15374846..15375611 34..799 100 <- Minus
2R 15375667..15375699 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15374846..15375611 34..799 100 <- Minus
2R 15375667..15375699 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15374846..15375611 34..799 100 <- Minus
2R 15375667..15375699 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:22:32 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11262351..11263116 34..799 100 <- Minus
arm_2R 11263172..11263204 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:04 Download gff for RE73276.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15376045..15376810 34..799 100 <- Minus
2R 15376866..15376898 1..33 100   Minus

RE73276.pep Sequence

Translation from 416 to 649

> RE73276.pep
MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQFDLESCPLCPSRP
MSRNSPQTRLFYLTLVGQVEGEQTSKF*
Sequence RE73276.pep has no blast hits.

RE73276.hyp Sequence

Translation from 416 to 649

> RE73276.hyp
MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQFDLESCPLCPSRP
MSRNSPQTRLFYLTLVGQVEGEQTSKF*
Sequence RE73276.hyp has no blast hits.