RE73276.complete Sequence
809 bp (809 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003757
> RE73276.complete
AGTTCCAAAATGCAGCTCATCGTGAAATTACTGATTGTCCTTTTGGCATT
ATTTGCTGTTCTTTATGGAGAAGTAAAACATCCACAAAGATCCTGGAGCC
ACCTTCCATGGCGGTAAATTAAGTGGCGTGAAAATTAGATACAAAAGATT
CAACTGTAGTTGTTCTTGATGTCTTATTAAAAAGTGAAATACTTTTGACT
TGTGCAAAAAACTCGAACTTGATAGTTTTTTTGCGCAATATAATACTTAT
ATACAAAGGCGACAGCGCCCTCTAGCGCTTTTCATTTTACAATAATGCGG
GACTATAGCTAATCCCATTGTCCCAGCTGCCAAGTACCATATTCAAAAGA
TCTGGAAATTCGGGAACCGGCTGAGAGTGGAAACTTTTGGATGCCGTGGA
GAGGCCCTGATACGGAATGTGTCATCCAAGTCTACTGATGTGGCGTATTT
ATTCCCTTAAGCCCACATCCAAATTCTTGGAGTTCAGGATCAAGAGGAGA
TACGGCCTGACTCGTTGGCATCCGCAGTTTGATTTGGAGAGCTGTCCCCT
TTGCCCCAGTCGCCCAATGTCGAGAAATTCTCCTCAGACAAGGCTATTCT
ATCTAACGCTTGTAGGCCAGGTTGAAGGCGAACAAACAAGTAAGTTCTAA
CTATTTTTACAATTCCACGTACGGCAAGCACATAGACAACCAGGATTGGA
TGCATCGCTTTCACCCATGGAATCATGAAATGCGTAATTTTTAGACTAAA
TTAAATGTTGAACCACGTTAAATAAATAAATATTTGCCCTGGAAATAATA
AAAAAAAAA
RE73276.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMG6-MB6.chr2R.20.008.b | 895 | DMG6-MB6.chr2R.20.008.b | 102..895 | 1..794 | 3970 | 100 | Plus |
DMG6-MB6.chr2R.20.008.a | 320 | DMG6-MB6.chr2R.20.008.a | 102..320 | 1..219 | 1095 | 100 | Plus |
dup-RA | 3195 | dup-RA | 2054..2125 | 539..610 | 225 | 87.5 | Plus |
dup-RA | 3195 | dup-RA | 3083..3130 | 755..802 | 180 | 91.6 | Plus |
dup-RA | 3195 | dup-RA | 2006..2046 | 507..547 | 175 | 95.1 | Plus |
dup-RA | 3195 | dup-RA | 2933..3012 | 647..726 | 160 | 80 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 11262023..11262789 | 799..33 | 3670 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 11263097..11263320 | 470..247 | 1060 | 98.2 | Minus |
chr2R | 21145070 | chr2R | 11261252..11261416 | 612..448 | 690 | 94.5 | Minus |
chr2R | 21145070 | chr2R | 11263380..11263553 | 206..33 | 525 | 86.8 | Minus |
chr2R | 21145070 | chr2R | 11259141..11259359 | 323..117 | 395 | 80.8 | Minus |
chr2R | 21145070 | chr2R | 11263011..11263082 | 799..728 | 315 | 95.8 | Minus |
chr2R | 21145070 | chr2R | 11260672..11260727 | 204..149 | 235 | 94.6 | Minus |
chr2R | 21145070 | chr2R | 11261079..11261123 | 799..755 | 225 | 100 | Minus |
chr2R | 21145070 | chr2R | 11264766..11264837 | 610..539 | 225 | 87.5 | Minus |
chr2R | 21145070 | chr2R | 11261447..11261508 | 443..382 | 220 | 90.3 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15374845..15375612 | 800..33 | 3840 | 100 | Minus |
2R | 25286936 | 2R | 15375920..15376184 | 470..206 | 1265 | 98.5 | Minus |
2R | 25286936 | 2R | 15374065..15374231 | 612..448 | 635 | 93.4 | Minus |
2R | 25286936 | 2R | 15376222..15376395 | 206..33 | 540 | 87.4 | Minus |
2R | 25286936 | 2R | 15371947..15372165 | 323..117 | 410 | 81.3 | Minus |
2R | 25286936 | 2R | 15375833..15375905 | 800..728 | 320 | 95.9 | Minus |
2R | 25286936 | 2R | 15374262..15374371 | 443..327 | 310 | 86.3 | Minus |
2R | 25286936 | 2R | 15373889..15373934 | 800..755 | 230 | 100 | Minus |
2R | 25286936 | 2R | 15373482..15373535 | 204..151 | 225 | 94.4 | Minus |
2R | 25286936 | 2R | 15377614..15377685 | 610..539 | 225 | 87.5 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 15376044..15376811 | 800..33 | 3840 | 100 | Minus |
2R | 25260384 | 2R | 15377104..15377383 | 486..206 | 1275 | 97.5 | Minus |
2R | 25260384 | 2R | 15375264..15375430 | 612..448 | 645 | 93.4 | Minus |
2R | 25260384 | 2R | 15377421..15377535 | 206..92 | 515 | 96.5 | Minus |
2R | 25260384 | 2R | 15373275..15373364 | 206..117 | 360 | 93.3 | Minus |
2R | 25260384 | 2R | 15377032..15377104 | 800..728 | 320 | 95.8 | Minus |
2R | 25260384 | 2R | 15375461..15375536 | 443..368 | 290 | 92.1 | Minus |
2R | 25260384 | 2R | 15373146..15373240 | 323..230 | 270 | 87.3 | Minus |
2R | 25260384 | 2R | 15375088..15375133 | 800..755 | 230 | 100 | Minus |
2R | 25260384 | 2R | 15378813..15378884 | 610..539 | 225 | 87.5 | Minus |
2R | 25260384 | 2R | 15374681..15374734 | 204..151 | 225 | 94.4 | Minus |
2R | 25260384 | 2R | 15377808..15377855 | 802..755 | 180 | 91.6 | Minus |
2R | 25260384 | 2R | 15378892..15378932 | 547..507 | 175 | 95.1 | Minus |
2R | 25260384 | 2R | 15377649..15377681 | 33..1 | 165 | 100 | Minus |
2R | 25260384 | 2R | 15376866..15376898 | 33..1 | 165 | 100 | Minus |
2R | 25260384 | 2R | 15377926..15378005 | 726..647 | 160 | 80 | Minus |
2R | 25260384 | 2R | 15375900..15375929 | 30..1 | 150 | 100 | Minus |
2R | 25260384 | 2R | 15375534..15375570 | 363..327 | 140 | 91.8 | Minus |
Blast to na_te.dros performed 2019-03-16 23:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 42..97 | 725..782 | 114 | 69 | Plus |
RE73276.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:41:00 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 11262023..11262788 | 34..799 | 98 | <- | Minus |
chr2R | 11262844..11262876 | 1..33 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:36:34 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:14 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43105-RB | 1..234 | 417..650 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 18:22:32 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 17:42:22 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:54:48 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 20:04:44 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:13 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43105-RB | 1..799 | 1..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 18:22:32 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 17:42:22 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:54:48 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15374846..15375611 | 34..799 | 100 | <- | Minus |
2R | 15375667..15375699 | 1..33 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15374846..15375611 | 34..799 | 100 | <- | Minus |
2R | 15375667..15375699 | 1..33 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:00 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15374846..15375611 | 34..799 | 100 | <- | Minus |
2R | 15375667..15375699 | 1..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:22:32 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11262351..11263116 | 34..799 | 100 | <- | Minus |
arm_2R | 11263172..11263204 | 1..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:04 Download gff for
RE73276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15376045..15376810 | 34..799 | 100 | <- | Minus |
2R | 15376866..15376898 | 1..33 | 100 | | Minus |
RE73276.pep Sequence
Translation from 416 to 649
> RE73276.pep
MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQFDLESCPLCPSRP
MSRNSPQTRLFYLTLVGQVEGEQTSKF*
Sequence RE73276.pep has no blast hits.
RE73276.hyp Sequence
Translation from 416 to 649
> RE73276.hyp
MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQFDLESCPLCPSRP
MSRNSPQTRLFYLTLVGQVEGEQTSKF*
Sequence RE73276.hyp has no blast hits.