Clone RE73310 Report

Search the DGRC for RE73310

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:733
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG30496-RA
Protein status:RE73310.pep: gold
Sequenced Size:2391

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30496 2002-08-18 Blastp of sequenced clone
CG30496 2003-01-01 Sim4 clustering to Release 3
CG30496 2008-04-29 Release 5.5 accounting
CG30496 2008-08-15 Release 5.9 accounting
CG30496 2008-12-18 5.12 accounting

Clone Sequence Records

RE73310.complete Sequence

2391 bp (2391 high quality bases) assembled on 2002-08-18

GenBank Submission: BT001741

> RE73310.complete
GAAAAAAAGGGGGGAGAGAGAGAGAGAGAGAGCTAGTAAAGGGAACTGCT
GACTGTCAAATGCCGGCGGCCTTAGATTTTTCGACTATTTTCAATAAAAT
TGTGAAATACCAGTGAAAAATTAAAGCAAATAAATAAAATGCAGGAGCAG
GAGATGGAGGTGGAAGTGGGGGACCCGGCAAAGGCGTCGAATTTGCTGCG
GCTCATCAAGCAGCTGCTGCTGGAAAAAGCTTACGATGGCGTGCGGATGT
TGTTTCAAAGTGCCCAGGAATCGGAAAAGAACACTCGGCTGCTGCCCCAC
ATAGCCATGGATCTATACCATGACGTGTGCTTGGAAAACATTTCCGACGA
GGTGAACTCCCAGGAGCCAGAACTATTCGACTGCTCTGACGAGCTGCTCA
AGCTGCTGGCCAAGTACGCCCCACTGCATGAGCTTATGCTGGAACTGATG
GAGCGCTTGGAAGAGAGTAGCAGTATCAATGTGTTCGGCGCCTATCTGCG
GGCCCTACAAGTTGTGCTGCAGCGACAGGGACGCGACAAGCCGCAGGCCG
TTGAGTGGAGCCTGAATAGCATCTTCACCCATCTCAAGGATTTGCCCCTG
CCCGAATACCTCTCCGAGGGCTATGACGAGGCCCAAGCGCGACTCATAGA
GCAAAACGAACAGGTGGAGGACCTTCTGGCTCACTACATCACCGTGGGAC
TCTTTCGGGAGCCGCTCCGCGATGAAATTCTGCAGCAGGATGTGCGGACA
CCCAGCCAAATATTCAGGGATTGCGGCGTCAACCGGCGCAACATATTCAC
TTGCTTCTTCATTCAGCTGTTGGGACGTCCGTTGGCCCTGCTGGAGATGA
ATCACGCCAAGGAGGACCTTACGAGATCCTACGTGCAGCAGGTTACGGAA
AGCCTGACTCAGGATGCCAACCAGTTCCTGGGGGATCCCTTCTACCTGCT
CAACCTCGTGGAACAGCGTGCCAGATGGCTAAGGAAACTAGATGCCTCGA
GAGGCGTCTACGAGATGAGTTGCCAGAATGTTTTCCTCATCGAGGAGAAA
CTTCCGCTGCATGCTGTAGCCATGTACTATCACTCGCTGTTCGTGGGTAA
CCAACTGCCCACAAACGCACCAAAGGTATATGCACCTTTATTCCTATTCG
AAACGATTGTCTATCTGGCTGAAGTGCTACTCAGGCAGCAGGAGCCTCCC
CTACAATATTGTGGTCTTCGATTAGTGGAACATCATTTGAGTACCTTGCA
GCACTCAGTTCCCACCAGCTCCCTCCAGCTGGATGTCCACAAGCGCTTTT
GCGAAGCCCTTTGCAAGATTGTGGGCTATTCGCCGCAGGTCGCACTTCGG
CAGTTGGGAATTCATGTGCTCAGGCAATTTGTTCTGGCCTTCGATGATCA
TGGAAAGTATCTCATCCTTAAAAATCTGATGGGGACATTGCAGCACGGCG
GACTAATGGGCTACCTCGGAGGGATGTACAAGGACCTTGTTGACAAGGCG
CTAGGGCAATCTGGTCCCATGCCGGAAGTTTATAGCGGAAAGCTCTTCCG
CGAGATGTTGCTGCTCTGCGTCTGTGTGCTGCCCCATGACGTGAAATCCG
ATCTTCTTCTGCACTCCGATCGCCTGTGTCATGCTCTGAATATCCTACGC
TACTTTGCGGCAAGAGACAAGAATGATGTGACTGGCTTCTGGCAGGCTCT
GCCGGAAATTGAAAAGGAATTGCTGGACCCACTGGGAACAGCGCTTAACT
TTTCGATGGCCCATTACAAGGCGTACAAGGAGCGCGTCGAAAAGGGTCAG
AGTGCTTCGGATGATGAACTAATGCAGCGCCAACTCAACATGCTCGCCGT
CAACATAAGCAATAGCGGAATGGCTGGCGGCGACGCGGAGAGCAAGCTGC
CCGACATTGGACGGCAGGAGAAGCTCGATGTGCTGGCCAGTTCCATTACC
AGCTTGGAAACGCTACAATCTTTATATCTGCGCGCCAGAGAGATCATCGA
ACAGTCCGCTCGCCTGCGACGGGTTGCCAATCCATCAGATGCTTAGCTTG
TAGTTTGTCCACAATGAAAGCGAAATGATAACGTAAACTGTGTGTAAACA
GAACCGAAAACGAAATCGAAACTTAAACTGATCTATGTGGTCTGTGGGTT
CTTGGCTGGGGCGATAATTAACCGACTAATTGAGCCAGTTGTGGTGTGCT
AACTAACTGGCCAGCGATGCGGGCTTTGCATTGCGATCTGCGCACTGAAA
TCTAGTTGCACACAAATAGGTACACATAGGTGTGCGTACTTAACACCTAA
GCTGGCAGCGTTTTTCTAATTTTTATAGCCATTTTAAATATGTTTTTGTA
TTTCAAATATATGAATTAGCTAGGCAAAAAAAAAAAAAAAA

RE73310.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG30496-RA 2375 CG30496-RA 1..2375 1..2375 11860 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3586823..3589197 1..2375 11830 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7699504..7701890 1..2387 11905 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7700703..7703089 1..2387 11905 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 00:02:52 has no hits.

RE73310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:04:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3586823..3589197 1..2375 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:35 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..1908 139..2046 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:09 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..1908 139..2046 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:45 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..1908 139..2046 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:07 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..1908 139..2046 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:21 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..1908 139..2046 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:39:59 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..2375 1..2375 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:09 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..2375 1..2375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:45 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 5..2379 1..2375 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 1..2375 1..2375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:21 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
CG30496-RA 5..2379 1..2375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7699504..7701878 1..2375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7699504..7701878 1..2375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7699504..7701878 1..2375 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:45 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3587009..3589383 1..2375 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:08 Download gff for RE73310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7700703..7703077 1..2375 99   Plus

RE73310.pep Sequence

Translation from 138 to 2045

> RE73310.pep
MQEQEMEVEVGDPAKASNLLRLIKQLLLEKAYDGVRMLFQSAQESEKNTR
LLPHIAMDLYHDVCLENISDEVNSQEPELFDCSDELLKLLAKYAPLHELM
LELMERLEESSSINVFGAYLRALQVVLQRQGRDKPQAVEWSLNSIFTHLK
DLPLPEYLSEGYDEAQARLIEQNEQVEDLLAHYITVGLFREPLRDEILQQ
DVRTPSQIFRDCGVNRRNIFTCFFIQLLGRPLALLEMNHAKEDLTRSYVQ
QVTESLTQDANQFLGDPFYLLNLVEQRARWLRKLDASRGVYEMSCQNVFL
IEEKLPLHAVAMYYHSLFVGNQLPTNAPKVYAPLFLFETIVYLAEVLLRQ
QEPPLQYCGLRLVEHHLSTLQHSVPTSSLQLDVHKRFCEALCKIVGYSPQ
VALRQLGIHVLRQFVLAFDDHGKYLILKNLMGTLQHGGLMGYLGGMYKDL
VDKALGQSGPMPEVYSGKLFREMLLLCVCVLPHDVKSDLLLHSDRLCHAL
NILRYFAARDKNDVTGFWQALPEIEKELLDPLGTALNFSMAHYKAYKERV
EKGQSASDDELMQRQLNMLAVNISNSGMAGGDAESKLPDIGRQEKLDVLA
SSITSLETLQSLYLRAREIIEQSARLRRVANPSDA*

RE73310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13195-PA 637 GF13195-PA 5..637 2..635 2611 77.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21885-PA 666 GH21885-PA 4..652 14..629 1924 58.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30496-PA 635 CG30496-PA 1..635 1..635 3255 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20384-PA 631 GI20384-PA 2..631 5..634 2002 59.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10524-PA 646 GL10524-PA 24..629 29..629 2198 68.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15883-PA 646 GA15883-PA 24..629 29..629 2198 68.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20974-PA 459 GM20974-PA 1..335 1..335 1743 97 Plus
Dsec\GM20974-PA 459 GM20974-PA 337..459 513..635 609 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22110-PA 672 GJ22110-PA 5..652 14..628 1999 60 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17802-PA 641 GK17802-PA 12..623 16..621 2124 67.7 Plus

RE73310.hyp Sequence

Translation from 138 to 2045

> RE73310.hyp
MQEQEMEVEVGDPAKASNLLRLIKQLLLEKAYDGVRMLFQSAQESEKNTR
LLPHIAMDLYHDVCLENISDEVNSQEPELFDCSDELLKLLAKYAPLHELM
LELMERLEESSSINVFGAYLRALQVVLQRQGRDKPQAVEWSLNSIFTHLK
DLPLPEYLSEGYDEAQARLIEQNEQVEDLLAHYITVGLFREPLRDEILQQ
DVRTPSQIFRDCGVNRRNIFTCFFIQLLGRPLALLEMNHAKEDLTRSYVQ
QVTESLTQDANQFLGDPFYLLNLVEQRARWLRKLDASRGVYEMSCQNVFL
IEEKLPLHAVAMYYHSLFVGNQLPTNAPKVYAPLFLFETIVYLAEVLLRQ
QEPPLQYCGLRLVEHHLSTLQHSVPTSSLQLDVHKRFCEALCKIVGYSPQ
VALRQLGIHVLRQFVLAFDDHGKYLILKNLMGTLQHGGLMGYLGGMYKDL
VDKALGQSGPMPEVYSGKLFREMLLLCVCVLPHDVKSDLLLHSDRLCHAL
NILRYFAARDKNDVTGFWQALPEIEKELLDPLGTALNFSMAHYKAYKERV
EKGQSASDDELMQRQLNMLAVNISNSGMAGGDAESKLPDIGRQEKLDVLA
SSITSLETLQSLYLRAREIIEQSARLRRVANPSDA*

RE73310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30496-PA 635 CG30496-PA 1..635 1..635 3255 100 Plus