Clone RE73396 Report

Search the DGRC for RE73396

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:733
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCG14427-RA
Protein status:RE73396.pep: gold
Preliminary Size:759
Sequenced Size:1178

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14427 2002-01-01 Sim4 clustering to Release 2
CG14427 2002-04-26 Blastp of sequenced clone
CG14427 2003-01-01 Sim4 clustering to Release 3
CG14427 2008-04-29 Release 5.5 accounting
CG14427 2008-08-15 Release 5.9 accounting
CG14427 2008-12-18 5.12 accounting

Clone Sequence Records

RE73396.complete Sequence

1178 bp (1178 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113551

> RE73396.complete
AGAATAGTCGACAAGGAATTGTCAAGCGAGTAACATCATACCAGAGTTTA
CTACACTACAACTTTCAAACGAAACCGAAATCATGGGTTGTTGTGCAAGC
AATCTGAAGCTCAAGGAGCTGAGCAGCCTGAATAGCAGCATCTATGTGGC
CTCCGGCGGATCGGCAAGTCGCTCCCAGAAGCGTTTGTACAGCAGTCGCA
ACAGCAGCGGAGTGGGCAGCAGCAGCAGCGGTAGCAGCAGCGGTAGCAGC
AGCTCCTCATCGTCCAGTCGCAGCATCTGGAGCCGCTCCAGCCAGCCGAT
TTGCGATGATTTCGCAGAGCAACCACAACTGGACAAATCCTGCGGTTACT
ACACCTGCAGCAGCGCCAATTCATCGCCGAGAAAGGGCCAGGAGAATGAC
GAGGAGATGGAGGGAGTGCTTATGCGCACGCAGGACATGAGTGCATCATC
CCGAGACTCTACACAATCCGATCAAATGGTGGGCAATCTGGAGTGGGAGA
TGCACATGATGCAGCAGGCGCAGCGCATTATGCCCAAGACCTCGTCGCCG
ATTTGCCAAAGAAGGGATAATGCTCAGATGCCTCCCTCATCGTACCAGAA
GTGGAGAAACTATCTGCAATCCACGCCAGCGCACATGCTGCACAATGTCA
CCCACATTCCGGAGGCAATTGCCGGCCACTTTTGCCCCACCAGCTTTCCG
GGCTTCAGCGACCTGGAGGAGATGGAGAGTGCGGCCAAGAGGTTCAAGGT
GGATTTCGAGAAGGAACCACTGGAGGAGCCCATGTACACCACCTACCAAT
TGCTAGCCGGGCACACGCACACCATATCCACAGATCTGTGAGGCGTGAAG
ACCCAACCAATCGCACCATCTCCGCCTGGTTCGGAGTGGTTCGGCGATTG
GTGTAGCCCATCGATGTAATACCCGGCGAGGACTGGCAACAGGTGTGCCA
GCTGTCAAACAGTTGGGCAATTAATAATTACAAATCCGCTACGATTGCAT
TGCCCAGCAATGGCAAATCGACCTATACGATTTTACAAAAATACCTATTA
TTTTTTTTGACTGTATATCATACAAACTAGACTTAAGGACAAGGACAATC
AACGATGTGTACATTGTTGGATAATCAAATTGTGCTCGCAAATATATTTT
ACAATCTCTAAGAAAAAAAAAAAAAAAA

RE73396.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-RA 1162 CG14427-RA 1..1162 1..1162 5795 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6932655..6933816 1..1162 5795 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7040608..7041769 1..1162 5795 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7048706..7049867 1..1162 5795 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 20:16:05 has no hits.

RE73396.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:42 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6932655..6932843 1..189 99 == Plus
chrX 6932908..6933816 254..1162 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:38 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..759 83..841 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:00 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..759 83..841 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:20 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..759 83..841 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:29 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..759 83..841 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:31 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..759 83..841 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:01 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..1162 1..1162 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:00 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..1162 1..1162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:20 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 6..1167 1..1162 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:29 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 1..1162 1..1162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:31 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 6..1167 1..1162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:42 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
X 7040608..7041769 1..1162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:42 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
X 7040608..7041769 1..1162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:42 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
X 7040608..7041769 1..1162 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:20 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6934641..6935802 1..1162 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:07 Download gff for RE73396.complete
Subject Subject Range Query Range Percent Splice Strand
X 7048706..7049867 1..1162 99   Plus

RE73396.hyp Sequence

Translation from 0 to 840

> RE73396.hyp
EQSTRNCQASNIIPEFTTLQLSNETEIMGCCASNLKLKELSSLNSSIYVA
SGGSASRSQKRLYSSRNSSGVGSSSSGSSSGSSSSSSSSRSIWSRSSQPI
CDDFAEQPQLDKSCGYYTCSSANSSPRKGQENDEEMEGVLMRTQDMSASS
RDSTQSDQMVGNLEWEMHMMQQAQRIMPKTSSPICQRRDNAQMPPSSYQK
WRNYLQSTPAHMLHNVTHIPEAIAGHFCPTSFPGFSDLEEMESAAKRFKV
DFEKEPLEEPMYTTYQLLAGHTHTISTDL*

RE73396.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-PA 252 CG14427-PA 1..252 28..279 1315 100 Plus

RE73396.pep Sequence

Translation from 82 to 840

> RE73396.pep
MGCCASNLKLKELSSLNSSIYVASGGSASRSQKRLYSSRNSSGVGSSSSG
SSSGSSSSSSSSRSIWSRSSQPICDDFAEQPQLDKSCGYYTCSSANSSPR
KGQENDEEMEGVLMRTQDMSASSRDSTQSDQMVGNLEWEMHMMQQAQRIM
PKTSSPICQRRDNAQMPPSSYQKWRNYLQSTPAHMLHNVTHIPEAIAGHF
CPTSFPGFSDLEEMESAAKRFKVDFEKEPLEEPMYTTYQLLAGHTHTIST
DL*

RE73396.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20971-PA 255 GF20971-PA 1..255 1..252 826 68.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19630-PA 247 GG19630-PA 1..247 1..252 1048 87.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12603-PA 254 GH12603-PA 1..254 1..252 614 56.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-PA 252 CG14427-PA 1..252 1..252 1315 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21576-PA 268 GI21576-PA 1..268 1..252 619 54.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26805-PA 151 GL26805-PA 24..89 63..123 154 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12976-PA 261 GA12976-PA 1..261 1..252 757 65.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17502-PA 247 GM17502-PA 1..247 1..252 1280 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16831-PA 247 GD16831-PA 1..247 1..252 1277 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15796-PA 258 GJ15796-PA 1..258 1..252 624 51.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25290-PA 275 GK25290-PA 1..275 1..252 640 53.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15698-PA 258 GE15698-PA 1..258 1..252 1108 83.4 Plus