Clone RE73473 Report

Search the DGRC for RE73473

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:734
Well:73
Vector:pFlc-1
Associated Gene/Transcriptnumb-RB
Protein status:RE73473.pep: gold
Sequenced Size:2951

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3779 2006-04-19 Manual selection by Joe Carlson for RB
numb 2008-04-29 In process prior to 5.5

Clone Sequence Records

RE73473.complete Sequence

2951 bp assembled on 2009-01-06

GenBank Submission: BT056311.1

> RE73473.complete
AGTTCGCTTTCCAGCTCAGTCGCTGTCAGTCGCTCTGCGCGCTCTTTTCT
CGACGGTCGTGTGTGTGCGTGCACGCGCGGGTGTGTGTTTGCGTGTGTGT
GTGTGCGTCGTGGGCCATTTGTTTGGTGCCAATTTATTTGGCCGAAACTC
CAATGCGAGTTGTTCGGAAAATTATGAATTGTGCTGGCCCAGAAACATGA
GAAGCTTTGCGGCCCTGAAACACTGTAATTAAAACCTGCTGGATTCGGCC
TCCCCACAAAAAAAATAAAAAGAAACAAAACCAAGTCTCCAACTTCACAC
TGTAAAGTTGTGTAATCAGTCCGACGAAACGGAGTTTCTCGCTTTGTTTG
TTTTTCTCGGCTTTATTTTCGGCAACAACAAAAATATATTTTTAAATTGC
TTTTAAGCTTTCGGAGTTTTGTGGAAAAAGCTTCACGCCAACTTCATAAC
TTGACAATTAAATCATCGCAGCTTTTTCAAGGCACCTTAAACTAATACAA
GAAATCCGCTTCCTTCCGGTTTAGCAAGAAATCGCCGAAGAAAATGGATC
GTCTGCGTCGCTCCTTTCGCGATTCCTTTAGGCGTCGCAAGGATCGCGTT
CCCGAATCCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCG
ATCGGCCACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCT
TTGAATCGCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGG
CAATCCCGTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGG
CCTGCGAGTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCA
TCGAGAAGGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTC
AGCTACATATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTT
CCTGGCGTGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTG
CTTTTGCCGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGC
GTGACAATGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATC
CTTCCGTCAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCA
CAAATGAGCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCG
GCGGCCACCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGC
CACGCCCAACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTG
GCAGTCAGTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTT
CCGTCCAATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAA
TCCAATGCAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGC
CGGCCAAGTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCC
GATTCTGTGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTT
GACCCAGACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACA
ACAATCGCAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAA
CATGTACACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGC
CAGCACCACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGAT
CGGAGCAGAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGG
CTGGGTCATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCAC
TTATTTGGCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCG
CTGCAGTTGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTG
GCCAATGTGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAG
CACTGCGCGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCAC
CGCCCAAGGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATT
GCGGGGTCACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACT
TAGTTTAAAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAG
ATGGTTAGATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAAC
GCAAACATAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAG
TTACTCACACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGC
GCTTAGCACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCA
GTTCGTAAGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGT
ATGCAACTAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGA
GTCATACTTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTA
GACTGATACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTAC
CAAGTTACCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAA
ATGGCACCCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATG
CCCTTCCACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACA
TAAATATGTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTAT
TATTTTATCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTT
TATTATTTAACTTAATTTTTAAATCTGTACAAAATGTATTATACTTAAAT
TATAAATATAATTTAAAAATAAACAAAACGGAAACGAAAAAAAAAAAAAA
A

RE73473.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
numb-RB 3209 numb-RB 72..3013 1..2942 14695 99.9 Plus
numb.j 3922 numb.j 823..3264 501..2942 12195 99.9 Plus
numb.a 3486 numb.a 823..3264 501..2942 12195 99.9 Plus
numb.j 3922 numb.j 1..502 1..502 2510 100 Plus
numb.a 3486 numb.a 1..502 1..502 2510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9459816..9462001 750..2936 10615 99.1 Plus
chr2L 23010047 chr2L 9436424..9436895 1..471 2265 99.2 Plus
chr2L 23010047 chr2L 9459394..9459644 500..750 1240 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 750..2942 10950 100 Plus
2L 23513712 2L 9437489..9437959 1..471 2355 100 Plus
2L 23513712 2L 9460503..9460753 500..750 1255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 750..2942 10950 99.9 Plus
2L 23513712 2L 9437489..9437959 1..471 2355 100 Plus
2L 23513712 2L 9460503..9460753 500..750 1255 100 Plus
2L 23513712 2L 9447015..9447047 469..501 165 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:50:06 has no hits.

RE73473.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:15 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9445933..9445962 472..501 100 -> Plus
chr2L 9459396..9459644 502..750 99 -> Plus
chr2L 9459817..9461886 751..2820 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:37:30 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 74..1671 494..2091 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:22:35 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 74..1671 494..2091 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:09 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 74..1671 494..2091 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:12 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 74..1671 494..2091 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:30 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 1..2912 25..2936 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:22:34 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 1..2912 25..2936 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:09 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 21..2956 1..2936 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:12 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 21..2956 1..2936 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:15 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9437489..9437959 1..471 100 -> Plus
2L 9447018..9447047 472..501 100 -> Plus
2L 9460505..9460753 502..750 100 -> Plus
2L 9460938..9463123 751..2936 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:15 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9437489..9437959 1..471 100 -> Plus
2L 9447018..9447047 472..501 100 -> Plus
2L 9460505..9460753 502..750 100 -> Plus
2L 9460938..9463123 751..2936 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:15 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9437489..9437959 1..471 100 -> Plus
2L 9447018..9447047 472..501 100 -> Plus
2L 9460505..9460753 502..750 100 -> Plus
2L 9460938..9463123 751..2936 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:09 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9437489..9437959 1..471 100 -> Plus
arm_2L 9447018..9447047 472..501 100 -> Plus
arm_2L 9460505..9460753 502..750 100 -> Plus
arm_2L 9460938..9463123 751..2936 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:10:22 Download gff for RE73473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9437489..9437959 1..471 100 -> Plus
2L 9447018..9447047 472..501 100 -> Plus
2L 9460505..9460753 502..750 100 -> Plus
2L 9460938..9463123 751..2936 100   Plus

RE73473.pep Sequence

Translation from 543 to 2090

> RE73473.pep
MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCV
EVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD
QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAV
GCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMAT
VGTNERSVDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLS
TIGSQSPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAE
VSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLN
FNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSP
SRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASG
TGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPF
ISPPKAPAQSFQVQL*

RE73473.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22745-PA 556 GF22745-PA 42..556 1..515 2354 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25352-PA 560 GG25352-PA 42..560 1..515 2682 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13024-PA 555 GH13024-PA 42..555 1..515 1966 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 42..556 1..515 2663 100 Plus
numb-PB 515 CG3779-PB 1..515 1..515 2663 100 Plus
numb-PA 556 CG3779-PA 42..556 1..515 2663 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17641-PA 575 GI17641-PA 42..575 1..515 2079 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26154-PA 560 GL26154-PA 42..560 1..515 2157 86.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17683-PA 559 GA17683-PA 42..559 1..515 2146 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17464-PA 556 GM17464-PA 42..556 1..515 2726 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23607-PA 556 GD23607-PA 42..556 1..515 2728 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18207-PA 552 GJ18207-PA 42..552 1..515 2063 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24208-PA 561 GK24208-PA 42..561 1..515 2154 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18844-PA 556 GE18844-PA 42..556 1..515 2704 98.4 Plus
Dyak\GE14752-PA 132 GE14752-PA 12..132 395..515 538 96.7 Plus
Dyak\GE25448-PA 132 GE25448-PA 12..132 395..515 537 96.7 Plus

RE73473.hyp Sequence

Translation from 543 to 2090

> RE73473.hyp
MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCV
EVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD
QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAV
GCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMAT
VGTNERSVDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLS
TIGSQSPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAE
VSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLN
FNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSP
SRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASG
TGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPF
ISPPKAPAQSFQVQL*

RE73473.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 42..556 1..515 2663 100 Plus
numb-PB 515 CG3779-PB 1..515 1..515 2663 100 Plus
numb-PA 556 CG3779-PA 42..556 1..515 2663 100 Plus