BDGP Sequence Production Resources |
Search the DGRC for RE73473
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 734 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | numb-RB |
Protein status: | RE73473.pep: gold |
Sequenced Size: | 2951 |
Gene | Date | Evidence |
---|---|---|
CG3779 | 2006-04-19 | Manual selection by Joe Carlson for RB |
numb | 2008-04-29 | In process prior to 5.5 |
2951 bp assembled on 2009-01-06
GenBank Submission: BT056311.1
> RE73473.complete AGTTCGCTTTCCAGCTCAGTCGCTGTCAGTCGCTCTGCGCGCTCTTTTCT CGACGGTCGTGTGTGTGCGTGCACGCGCGGGTGTGTGTTTGCGTGTGTGT GTGTGCGTCGTGGGCCATTTGTTTGGTGCCAATTTATTTGGCCGAAACTC CAATGCGAGTTGTTCGGAAAATTATGAATTGTGCTGGCCCAGAAACATGA GAAGCTTTGCGGCCCTGAAACACTGTAATTAAAACCTGCTGGATTCGGCC TCCCCACAAAAAAAATAAAAAGAAACAAAACCAAGTCTCCAACTTCACAC TGTAAAGTTGTGTAATCAGTCCGACGAAACGGAGTTTCTCGCTTTGTTTG TTTTTCTCGGCTTTATTTTCGGCAACAACAAAAATATATTTTTAAATTGC TTTTAAGCTTTCGGAGTTTTGTGGAAAAAGCTTCACGCCAACTTCATAAC TTGACAATTAAATCATCGCAGCTTTTTCAAGGCACCTTAAACTAATACAA GAAATCCGCTTCCTTCCGGTTTAGCAAGAAATCGCCGAAGAAAATGGATC GTCTGCGTCGCTCCTTTCGCGATTCCTTTAGGCGTCGCAAGGATCGCGTT CCCGAATCCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCG ATCGGCCACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCT TTGAATCGCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGG CAATCCCGTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGG CCTGCGAGTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCA TCGAGAAGGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTC AGCTACATATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTT CCTGGCGTGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTG CTTTTGCCGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGC GTGACAATGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATC CTTCCGTCAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCA CAAATGAGCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCG GCGGCCACCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGC CACGCCCAACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTG GCAGTCAGTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTT CCGTCCAATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAA TCCAATGCAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGC CGGCCAAGTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCC GATTCTGTGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTT GACCCAGACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACA ACAATCGCAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAA CATGTACACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGC CAGCACCACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGAT CGGAGCAGAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGG CTGGGTCATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCAC TTATTTGGCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCG CTGCAGTTGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTG GCCAATGTGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAG CACTGCGCGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCAC CGCCCAAGGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATT GCGGGGTCACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACT TAGTTTAAAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAG ATGGTTAGATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAAC GCAAACATAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAG TTACTCACACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGC GCTTAGCACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCA GTTCGTAAGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGT ATGCAACTAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGA GTCATACTTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTA GACTGATACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTAC CAAGTTACCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAA ATGGCACCCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATG CCCTTCCACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACA TAAATATGTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTAT TATTTTATCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTT TATTATTTAACTTAATTTTTAAATCTGTACAAAATGTATTATACTTAAAT TATAAATATAATTTAAAAATAAACAAAACGGAAACGAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
numb-RB | 3209 | numb-RB | 72..3013 | 1..2942 | 14695 | 99.9 | Plus |
numb.j | 3922 | numb.j | 823..3264 | 501..2942 | 12195 | 99.9 | Plus |
numb.a | 3486 | numb.a | 823..3264 | 501..2942 | 12195 | 99.9 | Plus |
numb.j | 3922 | numb.j | 1..502 | 1..502 | 2510 | 100 | Plus |
numb.a | 3486 | numb.a | 1..502 | 1..502 | 2510 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9459816..9462001 | 750..2936 | 10615 | 99.1 | Plus |
chr2L | 23010047 | chr2L | 9436424..9436895 | 1..471 | 2265 | 99.2 | Plus |
chr2L | 23010047 | chr2L | 9459394..9459644 | 500..750 | 1240 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9460937..9463129 | 750..2942 | 10950 | 99.9 | Plus |
2L | 23513712 | 2L | 9437489..9437959 | 1..471 | 2355 | 100 | Plus |
2L | 23513712 | 2L | 9460503..9460753 | 500..750 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 9447015..9447047 | 469..501 | 165 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9445933..9445962 | 472..501 | 100 | -> | Plus |
chr2L | 9459396..9459644 | 502..750 | 99 | -> | Plus |
chr2L | 9459817..9461886 | 751..2820 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 74..1671 | 494..2091 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 74..1671 | 494..2091 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 74..1671 | 494..2091 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 74..1671 | 494..2091 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 1..2912 | 25..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 1..2912 | 25..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 21..2956 | 1..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 21..2956 | 1..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9437489..9437959 | 1..471 | 100 | -> | Plus |
2L | 9447018..9447047 | 472..501 | 100 | -> | Plus |
2L | 9460505..9460753 | 502..750 | 100 | -> | Plus |
2L | 9460938..9463123 | 751..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9437489..9437959 | 1..471 | 100 | -> | Plus |
2L | 9447018..9447047 | 472..501 | 100 | -> | Plus |
2L | 9460505..9460753 | 502..750 | 100 | -> | Plus |
2L | 9460938..9463123 | 751..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9437489..9437959 | 1..471 | 100 | -> | Plus |
2L | 9447018..9447047 | 472..501 | 100 | -> | Plus |
2L | 9460505..9460753 | 502..750 | 100 | -> | Plus |
2L | 9460938..9463123 | 751..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9437489..9437959 | 1..471 | 100 | -> | Plus |
arm_2L | 9447018..9447047 | 472..501 | 100 | -> | Plus |
arm_2L | 9460505..9460753 | 502..750 | 100 | -> | Plus |
arm_2L | 9460938..9463123 | 751..2936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9437489..9437959 | 1..471 | 100 | -> | Plus |
2L | 9447018..9447047 | 472..501 | 100 | -> | Plus |
2L | 9460505..9460753 | 502..750 | 100 | -> | Plus |
2L | 9460938..9463123 | 751..2936 | 100 | Plus |
Translation from 543 to 2090
> RE73473.pep MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCV EVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAV GCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMAT VGTNERSVDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLS TIGSQSPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAE VSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLN FNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSP SRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASG TGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPF ISPPKAPAQSFQVQL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22745-PA | 556 | GF22745-PA | 42..556 | 1..515 | 2354 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25352-PA | 560 | GG25352-PA | 42..560 | 1..515 | 2682 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13024-PA | 555 | GH13024-PA | 42..555 | 1..515 | 1966 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
numb-PD | 556 | CG3779-PD | 42..556 | 1..515 | 2663 | 100 | Plus |
numb-PB | 515 | CG3779-PB | 1..515 | 1..515 | 2663 | 100 | Plus |
numb-PA | 556 | CG3779-PA | 42..556 | 1..515 | 2663 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17641-PA | 575 | GI17641-PA | 42..575 | 1..515 | 2079 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26154-PA | 560 | GL26154-PA | 42..560 | 1..515 | 2157 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17683-PA | 559 | GA17683-PA | 42..559 | 1..515 | 2146 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17464-PA | 556 | GM17464-PA | 42..556 | 1..515 | 2726 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23607-PA | 556 | GD23607-PA | 42..556 | 1..515 | 2728 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18207-PA | 552 | GJ18207-PA | 42..552 | 1..515 | 2063 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24208-PA | 561 | GK24208-PA | 42..561 | 1..515 | 2154 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18844-PA | 556 | GE18844-PA | 42..556 | 1..515 | 2704 | 98.4 | Plus |
Dyak\GE14752-PA | 132 | GE14752-PA | 12..132 | 395..515 | 538 | 96.7 | Plus |
Dyak\GE25448-PA | 132 | GE25448-PA | 12..132 | 395..515 | 537 | 96.7 | Plus |
Translation from 543 to 2090
> RE73473.hyp MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCV EVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAV GCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMAT VGTNERSVDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLS TIGSQSPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAE VSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLN FNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSP SRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASG TGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPF ISPPKAPAQSFQVQL*