Clone RE73577 Report

Search the DGRC for RE73577

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:735
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG14014-RB
Protein status:RE73577.pep: gold
Preliminary Size:987
Sequenced Size:1143

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14014 2002-01-01 Sim4 clustering to Release 2
CG14014 2002-05-19 Blastp of sequenced clone
CG14014 2003-01-01 Sim4 clustering to Release 3
CG14014 2008-04-29 Release 5.5 accounting
CG14014 2008-08-15 Release 5.9 accounting
CG14014 2008-12-18 5.12 accounting

Clone Sequence Records

RE73577.complete Sequence

1143 bp (1143 high quality bases) assembled on 2002-05-19

GenBank Submission: AY119156

> RE73577.complete
ATCACTCACATTCCAACCGCCGATAGCCATGGCTCAGTCCACGAATTCCA
AGAAGCTGATGATGTTCCGCACTCCCAACGAGGAGGAGGCCCTGAAGAAT
CAGATCTTCATCTTTAACTCGCCCATTGACTACAAGGACCAGCAGCTGAT
CGTGTACCAGAAACCAGGCATCCTCACCGGAGACAAGGACTACGGCTACT
GCGTGGTGTACAAGCGAGATCACTACGTGCTCAATAACCCGCCCAACTTC
AAGAGCCCCACGAAGAGGAGCTTCCTCAACGAATGCATCCGCCAGTTGTA
TCTGATGAACGGCATGGGTCACAAGATGTACTGGAGGACTACAAGTGCAA
TGGCGCTGAGTACACCCGGCGAAGTGTGGCACCAGGTGAACAGTTGCCTG
CTCCCAGAACGACTGACGCCGCAAAAGGAGAGCCTGAAGCGGGTGAAGAG
GCAACTTTTCCGGGATCCACGGGCAGATCGCAAGAATCCCAACCCACTCA
AAGGCAAATGCTGGGGCACCCAAGTCTTCTGCTTCAAATCGATGCGCGAG
AAGATTGGCAGGAAGTACATCCGCCGGGGCTATCTGACCATCGCACGCCG
CGAAGCCCTGCAGGAGATGATCCGTGAGCACTTGGCACGAGAAATGGTCT
GCACTCCGGCCGCATGCAGAACGGTAATCAGCGCCTCCGACGGAATCTTC
AATGTGAATGCCGGTGTCATCGGCGACATCTGTAGCTACCACAGCCACGC
GGCTCGCCATCAGCCCGTCGTGGAGCGCCGTCTGACGGCCGGCGAAGCAC
GTCTCCGGAACAACGAGGCCTGTCGCCTGACTCAGCGGGCCAAGCGGCTG
GAGGCCATGTTCATACACGAACAAGTGCGACGGGCCGTCCAGAACCACCA
GCTCATTCTGGAGGAGTCGGTGCGATCCATCTACTATGCCAAGGAGCTCT
TCCGCCTTATCGAGGATCACGAGGAGTTCGTCTACACGGACAACAAGATC
CTGTCTAGAATCTGACGGACCCTTCTTGAATGGCATAGCCACCACTTTTA
TACCCCTTATAGTGTACACATATTTGTAATTATAGAACATTTAGATAATA
AAATGGAAACCACAAAATTATACAGTGAAAAAAAAAAAAAAAA

RE73577.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14014-RB 1129 CG14014-RB 1..1129 1..1129 5645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5548807..5549933 1127..1 5635 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5549707..5550835 1129..1 5645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5549707..5550835 1129..1 5645 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:40:18 has no hits.

RE73577.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:41:04 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5548807..5549933 1..1127 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:45 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..987 29..1015 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:04 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..987 29..1015 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:22:34 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..987 29..1015 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:50 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..987 29..1015 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:54 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..987 29..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:10 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..1127 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:03 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..1127 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:22:34 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..1127 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:50 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..1127 1..1127 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:54 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
CG14014-RB 1..1127 1..1127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:04 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5549709..5550835 1..1127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:04 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5549709..5550835 1..1127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:04 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5549709..5550835 1..1127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:22:34 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5549709..5550835 1..1127 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:23 Download gff for RE73577.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5549709..5550835 1..1127 100   Minus

RE73577.hyp Sequence

Translation from 0 to 1014

> RE73577.hyp
SLTFQPPIAMAQSTNSKKLMMFRTPNEEEALKNQIFIFNSPIDYKDQQLI
VYQKPGILTGDKDYGYCVVYKRDHYVLNNPPNFKSPTKRSFLNECIRQLY
LMNGMGHKMYWRTTSAMALSTPGEVWHQVNSCLLPERLTPQKESLKRVKR
QLFRDPRADRKNPNPLKGKCWGTQVFCFKSMREKIGRKYIRRGYLTIARR
EALQEMIREHLAREMVCTPAACRTVISASDGIFNVNAGVIGDICSYHSHA
ARHQPVVERRLTAGEARLRNNEACRLTQRAKRLEAMFIHEQVRRAVQNHQ
LILEESVRSIYYAKELFRLIEDHEEFVYTDNKILSRI*

RE73577.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14014-PB 328 CG14014-PB 1..328 10..337 1732 100 Plus

RE73577.pep Sequence

Translation from 1 to 1014

> RE73577.pep
SLTFQPPIAMAQSTNSKKLMMFRTPNEEEALKNQIFIFNSPIDYKDQQLI
VYQKPGILTGDKDYGYCVVYKRDHYVLNNPPNFKSPTKRSFLNECIRQLY
LMNGMGHKMYWRTTSAMALSTPGEVWHQVNSCLLPERLTPQKESLKRVKR
QLFRDPRADRKNPNPLKGKCWGTQVFCFKSMREKIGRKYIRRGYLTIARR
EALQEMIREHLAREMVCTPAACRTVISASDGIFNVNAGVIGDICSYHSHA
ARHQPVVERRLTAGEARLRNNEACRLTQRAKRLEAMFIHEQVRRAVQNHQ
LILEESVRSIYYAKELFRLIEDHEEFVYTDNKILSRI*

RE73577.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14746-PA 331 GF14746-PA 1..330 10..336 1434 80.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24296-PA 328 GG24296-PA 1..328 10..337 1722 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11447-PA 326 GH11447-PA 7..323 13..336 1158 65.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14014-PB 328 CG14014-PB 1..328 10..337 1732 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21898-PA 322 GI21898-PA 6..319 16..336 1139 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25898-PA 323 GL25898-PA 6..322 16..336 1323 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12698-PA 323 GA12698-PA 6..322 16..336 1324 75.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18013-PA 328 GM18013-PA 1..328 10..337 1771 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22647-PA 236 GD22647-PA 1..236 102..337 1269 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17816-PA 335 GJ17816-PA 6..332 1..336 1172 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21056-PA 324 GK21056-PA 3..323 11..336 1177 65.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18992-PA 328 GE18992-PA 1..327 10..336 1726 96.9 Plus