Clone RE73673 Report

Search the DGRC for RE73673

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:736
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG5828-RA
Protein status:RE73673.pep: gold
Preliminary Size:1113
Sequenced Size:1435

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5828 2002-01-01 Sim4 clustering to Release 2
CG5828 2002-06-11 Blastp of sequenced clone
CG5828 2003-01-01 Sim4 clustering to Release 3
CG5828 2008-04-29 Release 5.5 accounting
CG5828 2008-08-15 Release 5.9 accounting
CG5828 2008-12-18 5.12 accounting

Clone Sequence Records

RE73673.complete Sequence

1435 bp (1435 high quality bases) assembled on 2002-06-11

GenBank Submission: AY121699

> RE73673.complete
ACCGGCCATAATAAAAGAAAAACTTAGAAAAACGGCGATTAATTCAGCGC
TGAAAATCATACGCCTCGCGTCTATCCGCGTCGCAATGTACAGTAGCAGC
TTGCTGCCGGATCCGGCTGTCTATCAGCCGGACACCCTGGACCTGAACAC
GGATGGAAAGGCGGCGGATTACTGGTTCAACTGCTTCCGCGACATGGTGG
CCAAGTTCGCGAAGGTGGCGGCCAAGTCACAGGAGGAGGATCACACGGCC
ACCCAGCGGGCGGAGCAGTTCCAGGCGGCGTATCTGCAGCGGCTGGAGGA
GCACCAGCGTAATGTGCCAGTCAACAAGGGCAAGGTGATTCTAGGCACCA
GTGAGCTTCTCAAGCTAAACGAAACCCTGTTGCGCCGCTACGGATTTACA
GATCCCTGGCTGAGACAAAAGAGGCTGGAAAATGCATCGGCTGTTGCCCG
CCTGAAGCAGCGTCTGCAGGAATTGGATGCCCTGGCGGATGAGGACACAA
GGTGGACGGAGCTGGTACGCGGTGTCCTCGCCGGCAACATGTTTGACTGG
GGCGCACAGGCCATATCTAACATACTGGAGCAGGACAGCAATTTCGGACT
TCATTCAGCCCTGGATCGCATTGAGAAGCGACCCTGGTTGCTTGACAACC
TGGACAGCTGGTTGAATCGCCTCAAGGGCGAGCCACACAAGTGCGCCGTG
GTCTTTGTGGACAACAGCGGCGTGGATGTGGTTCTGGGTGTGCTTCCCTT
TGTCCGTGGACTGCTGAAACGTGGCACCAAGGTGCTGCTCTGCGCCAACA
GTGAACCTGCTCTAAATGATGTGACCAGCGAGGAGCTGAAATCCTTGCTG
GACGACTGCTCGCGCGAGTGTGAGGTCCTGGAGCAGGCCTGGTCAAAGGG
ACAACTACTGGTCTATGCAAATGGACAGACTGGTCCCTGCCTGGATATGC
GCACTCTCCCCAAGGAGCTGTGCGACGCCATCGCCGCCAATGAGACTGAC
CTGCTTGTGATTGAGGGCATGGGACGCGCCCTGCACACAAATCTGAATGC
CCGCTTCGGCTGCGAGACCCTCAAGTTGGCCGTGATAAAAAACAAATGGC
TGGCCAAGTACCTGGGCGGCGAGGATATGTTCGCCGTCGTCTGCAAGTTC
GAACCGGCTGCGCCCAGCTAGTCCAGGAGCCACTACGTTCATTGTTATCC
CTTGTTGACAAACAAACGATATCCCCGGTCCTTGTTCAGTTTGAAATCAT
TGTTACCGCCACCCAAAACCCACAACCCCCTAAACAATCCCATCCCTCAA
TCTACCGATGAGATTCATATGTGTATAAATGTAATCTTAATGCAAGTGCT
TTCGTGGTCACCCCACCCATATAACCGCAAAAAAACTTTTAATAATTAAA
AACAAGAATATATAATAACAAAAAAAAAAAAAAAA

RE73673.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-RA 1419 CG5828-RA 1..1419 1..1419 7080 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5093121..5094539 1..1419 7080 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5094021..5095442 1..1422 7095 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5094021..5095442 1..1422 7095 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 06:48:11 has no hits.

RE73673.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:49:19 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5093121..5094539 1..1419 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:47 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1086 86..1171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:47 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1086 86..1171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:41:32 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1086 86..1171 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:21 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1086 86..1171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:20:48 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1086 86..1171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:52:23 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1419 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:47 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1419 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:32 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 10..1428 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:21 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 1..1419 1..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:20:48 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 10..1428 1..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:19 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5094021..5095439 1..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:19 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5094021..5095439 1..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:19 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5094021..5095439 1..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:32 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5094021..5095439 1..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:27 Download gff for RE73673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5094021..5095439 1..1419 99   Plus

RE73673.hyp Sequence

Translation from 0 to 1170

> RE73673.hyp
PAIIKEKLRKTAINSALKIIRLASIRVAMYSSSLLPDPAVYQPDTLDLNT
DGKAADYWFNCFRDMVAKFAKVAAKSQEEDHTATQRAEQFQAAYLQRLEE
HQRNVPVNKGKVILGTSELLKLNETLLRRYGFTDPWLRQKRLENASAVAR
LKQRLQELDALADEDTRWTELVRGVLAGNMFDWGAQAISNILEQDSNFGL
HSALDRIEKRPWLLDNLDSWLNRLKGEPHKCAVVFVDNSGVDVVLGVLPF
VRGLLKRGTKVLLCANSEPALNDVTSEELKSLLDDCSRECEVLEQAWSKG
QLLVYANGQTGPCLDMRTLPKELCDAIAANETDLLVIEGMGRALHTNLNA
RFGCETLKLAVIKNKWLAKYLGGEDMFAVVCKFEPAAPS*

RE73673.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-PB 361 CG5828-PB 1..361 29..389 1885 100 Plus
CG5828-PA 361 CG5828-PA 1..361 29..389 1885 100 Plus

RE73673.pep Sequence

Translation from 85 to 1170

> RE73673.pep
MYSSSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQE
EDHTATQRAEQFQAAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLR
RYGFTDPWLRQKRLENASAVARLKQRLQELDALADEDTRWTELVRGVLAG
NMFDWGAQAISNILEQDSNFGLHSALDRIEKRPWLLDNLDSWLNRLKGEP
HKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPALNDVTSEE
LKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIA
ANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFA
VVCKFEPAAPS*

RE73673.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14376-PA 361 GF14376-PA 1..360 1..359 1608 82.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25052-PA 361 GG25052-PA 1..361 1..361 1859 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11492-PA 370 GH11492-PA 1..367 1..356 1382 73.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-PB 361 CG5828-PB 1..361 1..361 1885 100 Plus
CG5828-PA 361 CG5828-PA 1..361 1..361 1885 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16988-PA 359 GI16988-PA 1..357 1..356 1522 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18804-PA 363 GL18804-PA 1..360 1..356 1523 78.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19161-PA 363 GA19161-PA 1..360 1..356 1521 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18528-PA 361 GM18528-PA 1..361 1..361 1866 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23321-PA 361 GD23321-PA 1..361 1..361 1872 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24127-PA 362 GJ24127-PA 1..360 1..356 1518 77.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23730-PA 360 GK23730-PA 1..357 1..356 1506 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11338-PA 361 GE11338-PA 1..361 1..361 1856 96.4 Plus