BDGP Sequence Production Resources |
Search the DGRC for RE73921
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 739 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5010-RA |
Protein status: | RE73921.pep: gold |
Preliminary Size: | 589 |
Sequenced Size: | 976 |
Gene | Date | Evidence |
---|---|---|
CG5010 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5010 | 2002-06-14 | Blastp of sequenced clone |
CG5010 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5010 | 2008-04-29 | Release 5.5 accounting |
CG5010 | 2008-08-15 | Release 5.9 accounting |
CG5010 | 2008-12-18 | 5.12 accounting |
976 bp (976 high quality bases) assembled on 2002-06-14
GenBank Submission: AY128487
> RE73921.complete AATTTCAGTTACTAGCTCGTCATCAAAACAGCAACAACTGTTGAGAATAA AATTCTTGCGTGAAACCGAATCAATAGAAAAACAAATAAAACAAACAAAA TGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGCCCTCCACTCGTCGCACC GCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCCCCGGCTCCTGTCCAGAC ACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGTTCCGGCGCCCATGAGCG CTCCTCCCAGTGCCGTCGGCATGCCGGCACCGCAGCAGCCATCGATGTTC CAGCAGATGGCCGCCACCGCTGGAGGCGTGGCCGTGGGCTCAGCCATTGG ACACACCGTGGGTCATGGATTGACCTCGCTGTTCAGCGGATCTGGCGACA AGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCGCTCCTGCCCCCCAGCAG CCATACTACGCCCAGCAGCAGCAGCCCAATGAGCCGCAGGGAGCCTGCGC CTGGGAGCTCAAACAGTTCATCCAGTGCGCCCAGGGTCAGGCGGATCTTA CCCTCTGCGAGGGATTCAACGAGGCGCTGCGGCAGTGCAAGCAGAGCCAC CATCTCCAGTAGAGGGCCCAGCTCCGGTAGAATATCATCTGGCCAAGCAC CGGCGGATGAACGCAGCCGGATGAACCCATCGGATGAACACCTCCGGATG AACTCTGTCCTATCCCTTCGTTTAGTTCTTAATTGTTTAATTGCAAGCAT CTGAAAGAAAGCATTGTTTAATTGTAGTGCAAAATGAAATGTTAAATAGA AAATCCCGTTGGCAGCCCAAAACCCTTTCCAAAAAAAAACACAAACAAAC AAAACAAAAAAGAAACCAAACCCCACGGGTTGTCAATGTGGGCCAAAACA AAACGAAGTTTCCAAGAGTTTTTATTGTTTAAAATATAAATATATGCATA AGTTAATACCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17038505..17038650 | 1..146 | 100 | -> | Plus |
chrX | 17039301..17039316 | 147..162 | 100 | == | Plus |
chrX | 17039398..17040114 | 244..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..513 | 100..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..513 | 100..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..513 | 100..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..513 | 100..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..513 | 100..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..960 | 1..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..960 | 1..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 38..997 | 1..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 1..960 | 1..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5010-RA | 38..997 | 1..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17149038..17149183 | 1..146 | 100 | -> | Plus |
X | 17149834..17150647 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17149038..17149183 | 1..146 | 100 | -> | Plus |
X | 17149834..17150647 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17149038..17149183 | 1..146 | 100 | -> | Plus |
X | 17149834..17150647 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17043071..17043216 | 1..146 | 100 | -> | Plus |
arm_X | 17043867..17044680 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17157932..17158745 | 147..960 | 99 | Plus | |
X | 17157136..17157281 | 1..146 | 100 | -> | Plus |
Translation from 99 to 611
> RE73921.pep MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMS APPSAVGMPAPQQPSMFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGD KEAAAPAPAAAAPAPQQPYYAQQQQPNEPQGACAWELKQFIQCAQGQADL TLCEGFNEALRQCKQSHHLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22321-PA | 161 | GF22321-PA | 48..161 | 57..170 | 432 | 89.5 | Plus |
Dana\GF23297-PA | 182 | GF23297-PA | 85..182 | 65..169 | 173 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19099-PA | 169 | GG19099-PA | 1..169 | 1..170 | 817 | 98.2 | Plus |
Dere\GG11897-PA | 114 | GG11897-PA | 20..114 | 55..169 | 153 | 33.9 | Plus |
Dere\GG11896-PA | 176 | GG11896-PA | 73..176 | 67..169 | 145 | 42.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12294-PA | 160 | GH12294-PA | 1..160 | 1..170 | 474 | 74.3 | Plus |
Dgri\GH14350-PA | 173 | GH14350-PA | 57..173 | 43..169 | 178 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chchd2-PA | 170 | CG5010-PA | 1..170 | 1..170 | 894 | 100 | Plus |
Chchd2-PB | 122 | CG5010-PB | 1..122 | 49..170 | 648 | 100 | Plus |
CG31007-PA | 176 | CG31007-PA | 48..176 | 42..169 | 232 | 37.4 | Plus |
CG31008-PA | 114 | CG31008-PA | 2..114 | 37..169 | 174 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15541-PA | 166 | GI15541-PA | 1..166 | 1..170 | 491 | 78.9 | Plus |
Dmoj\GI10444-PA | 168 | GI10444-PA | 89..167 | 81..168 | 192 | 41.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15878-PA | 161 | GL15878-PA | 49..161 | 56..170 | 441 | 84.3 | Plus |
Dper\GL13971-PA | 188 | GL13971-PA | 85..188 | 65..169 | 177 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18592-PA | 161 | GA18592-PA | 49..161 | 56..170 | 439 | 84.3 | Plus |
Dpse\GA15932-PA | 184 | GA15932-PA | 81..184 | 65..169 | 177 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13491-PA | 55 | GM13491-PA | 11..55 | 126..170 | 198 | 82.2 | Plus |
Dsec\GM12113-PA | 176 | GM12113-PA | 67..176 | 61..169 | 147 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17330-PA | 113 | GD17330-PA | 1..113 | 58..170 | 575 | 99.1 | Plus |
Dsim\GD16686-PA | 174 | GD16686-PA | 67..174 | 61..169 | 143 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14883-PA | 167 | GJ14883-PA | 1..167 | 1..170 | 481 | 77.2 | Plus |
Dvir\GJ10660-PA | 158 | GJ10660-PA | 81..158 | 81..169 | 177 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19777-PA | 162 | GK19777-PA | 1..162 | 1..170 | 458 | 70 | Plus |
Dwil\GK14164-PA | 149 | GK14164-PA | 53..149 | 65..169 | 243 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17645-PA | 169 | GE17645-PA | 1..169 | 1..170 | 809 | 97.1 | Plus |
Dyak\GE23344-PA | 114 | GE23344-PA | 21..114 | 56..169 | 154 | 33.3 | Plus |
Dyak\GE23343-PA | 171 | GE23343-PA | 73..171 | 67..169 | 153 | 43.5 | Plus |
Translation from 99 to 611
> RE73921.hyp MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMS APPSAVGMPAPQQPSMFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGD KEAAAPAPAAAAPAPQQPYYAQQQQPNEPQGACAWELKQFIQCAQGQADL TLCEGFNEALRQCKQSHHLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5010-PA | 170 | CG5010-PA | 1..170 | 1..170 | 894 | 100 | Plus |
CG5010-PB | 122 | CG5010-PB | 1..122 | 49..170 | 648 | 100 | Plus |
CG31007-PA | 176 | CG31007-PA | 48..176 | 42..169 | 232 | 37.4 | Plus |
CG31008-PA | 114 | CG31008-PA | 2..114 | 37..169 | 174 | 30.8 | Plus |