Clone RE73943 Report

Search the DGRC for RE73943

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:739
Well:43
Vector:pFlc-1
Associated Gene/TranscriptCG11905-RB
Protein status:RE73943.pep: gold
Preliminary Size:3616
Sequenced Size:1505

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11905 2002-11-03 Blastp of sequenced clone
CG11905 2008-04-29 Release 5.5 accounting
CG11905 2008-08-15 Release 5.9 accounting
CG11905 2008-12-18 5.12 accounting

Clone Sequence Records

RE73943.complete Sequence

1505 bp (1505 high quality bases) assembled on 2002-11-03

GenBank Submission: BT001743

> RE73943.complete
AGTTCATCTTCAGACGTCGCCTGGCTCGCTGGCTCTTGGTTCTTGTTCAA
GGATATATTGTCAAGGCGAGGATTGGTCAACGCCACGAACACCAAGCATT
TATTGAAAAATCTGAAACTATTCACCAGAACCTCGCGTTAAAATGCGCTT
TCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTGGCACTTGGCCAGGCTC
AACAGCACGGTGGGCTGGCCGTCGAACACAGATCGAGGTCGGCTCCGCTG
GTCTTCGAGGAGCATCCTTACTACGGAGGATTGAGGGGTCAGCTTCTCCA
GCTGCGTCCGCAGCGGGACGGCAGTGTGGGCAGCTTCATCCTGCAGCGCC
AACAGCCGCAGTTGAGGGCTGTACCTAGAGACTCCGATGACACCATCACC
ATTTCGGCCGCAAGCATCTCGGCGGTAGCTGATGCTAGTGGAGCTTCTAG
CTCCAGCAGCTCGATCTCAGCCAGCGCCAGTGATTTCAATCGGATTCAGT
CGGCCGCCGCTCGGTTGGTTGCCATTCAGGAGTTGGCCAAGCGCAAGGGT
TCCTTCAGTGAGGAGGACAACAAGATCTATGCCAGCAGCTTACTGGAACT
GGGCCAGGCTGCCCAGAGTTTGGCCATGCTCCAGCAAAGCGGACAGATTA
AGGACTTTAGTGTTCTGCTGCAGCCGGACATGTTTGGCAATCCTCAAAAG
CAGCCAGCCAATTTCGGGCTAGAGGCCACCAACAATCCGGCGGACCAGAA
GATCGACGAACAGAAACTGGACGAGGTCACTGAGCAACAATTCTCGCCGG
ATGAGCAGTTCCTGCCCCCCAACAACGAGGATCCCTATGAGGATGTTAAC
GATAGTGTGTCCGTAATGGCTCCTAAGAAAGATGCCGCCGTGGCTGAGGC
AAAACCAGTGGGTCTTTCGATTGCCGGTGAAGGTGGCGTGGCCTCCTCAA
AACCGAACGCTGTGGCTCTCTCCGGCCGGAATGGATTGGCCGTAGCTTCG
CCCAAGGCCACAGCCATTGCTGGAGTTTCTCCCGAGGAGGCAGCTGCCTT
CAGCATTTCATTGCCCACTCGCAATCAACTGGTGATCAAGAGTCCCAATT
TGGCTTCGGAGAAGGCTAGCGAAGACTATGACTATAATGATGTACCGCTG
ACGGTTGCCCGCTTTCCTCTGACCCGGGAAACTCCTCAGCAATTGGTCCC
GGTTCGCATCTCTGGAGGGGATTCCCTTGTGGAAAGGTGGCGCACCGCCA
TCGCAGAGGATTATGCAGCCAGGCAGGCGCTGACCAAGGTGGCCATGCCG
CATCCCACACCCTTCATCCGCATGGCTCCCAAACTGCGTCTTCACTCCGA
ATAGAAAAAGTGCTGTAGGATTGGATGAACGAGATTAAAATTGGATTGGA
CTTGATCGCAATGAGATTCATACTTTACTTTAAGCAACATATTGTGTGCC
AGCTCCCAGATTGCCAATAAAATATGTCTATTTAAATAGAAAAAAAAAAA
AAAAA

RE73943.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RB 1643 CG11905-RB 111..1598 1..1488 7425 99.9 Plus
CG11905.a 1522 CG11905.a 77..1519 46..1488 7200 99.9 Plus
CG11905-RI 1656 CG11905-RI 169..1611 46..1488 7200 99.9 Plus
CG11905.a 1522 CG11905.a 1..45 1..45 225 100 Plus
CG11905-RI 1656 CG11905-RI 1..45 1..45 225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16918461..16919148 913..226 3335 99 Minus
chr3L 24539361 chr3L 16917821..16918398 1488..911 2875 99.8 Minus
chr3L 24539361 chr3L 16924645..16924757 157..45 550 99.1 Minus
chr3L 24539361 chr3L 16922748..16922815 225..158 325 98.5 Minus
chr3L 24539361 chr3L 16924933..16924977 45..1 225 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16929020..16929707 913..226 3440 100 Minus
3L 28110227 3L 16928380..16928957 1488..911 2890 100 Minus
3L 28110227 3L 16935194..16935306 157..45 565 100 Minus
3L 28110227 3L 16933293..16933360 225..158 325 98.5 Minus
3L 28110227 3L 16935488..16935532 45..1 225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16922120..16922807 913..226 3440 100 Minus
3L 28103327 3L 16921480..16922057 1488..911 2890 100 Minus
3L 28103327 3L 16928294..16928406 157..45 565 100 Minus
3L 28103327 3L 16926393..16926460 225..158 325 98.5 Minus
3L 28103327 3L 16928588..16928632 45..1 225 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:14:44 has no hits.

RE73943.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:15:57 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16917820..16918397 912..1489 99 <- Minus
chr3L 16918463..16919148 226..911 98 <- Minus
chr3L 16922748..16922815 158..225 98 <- Minus
chr3L 16924645..16924756 46..157 99 <- Minus
chr3L 16924933..16924977 1..45 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:58 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RI 1..1212 143..1354 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:07:48 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RI 1..1212 143..1354 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:06:45 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 1..1212 143..1354 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:30 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RI 1..1212 143..1354 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:38:18 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 1..1212 143..1354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:27:54 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 1..1488 1..1489 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:07:48 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 1..1488 1..1489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:45 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 5..1491 1..1487 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:30 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 1..1488 1..1489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:18 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RB 5..1491 1..1487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:57 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
3L 16928379..16928956 912..1489 99 <- Minus
3L 16929022..16929707 226..911 100 <- Minus
3L 16933293..16933360 158..225 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:57 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
3L 16928379..16928956 912..1489 99 <- Minus
3L 16929022..16929707 226..911 100 <- Minus
3L 16933293..16933360 158..225 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:57 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
3L 16928379..16928956 912..1489 99 <- Minus
3L 16929022..16929707 226..911 100 <- Minus
3L 16933293..16933360 158..225 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:45 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16921479..16922056 912..1489 99 <- Minus
arm_3L 16922122..16922807 226..911 100 <- Minus
arm_3L 16926393..16926460 158..225 98 <- Minus
arm_3L 16928294..16928405 46..157 100 <- Minus
arm_3L 16928588..16928632 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:10 Download gff for RE73943.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16921479..16922056 912..1489 99 <- Minus
3L 16922122..16922807 226..911 100 <- Minus
3L 16926393..16926460 158..225 98 <- Minus
3L 16928294..16928405 46..157 100 <- Minus
3L 16928588..16928632 1..45 100   Minus

RE73943.pep Sequence

Translation from 142 to 1353

> RE73943.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEHRSRSAPLVFEEHPYYGGLRGQ
LLQLRPQRDGSVGSFILQRQQPQLRAVPRDSDDTITISAASISAVADASG
ASSSSSSISASASDFNRIQSAAARLVAIQELAKRKGSFSEEDNKIYASSL
LELGQAAQSLAMLQQSGQIKDFSVLLQPDMFGNPQKQPANFGLEATNNPA
DQKIDEQKLDEVTEQQFSPDEQFLPPNNEDPYEDVNDSVSVMAPKKDAAV
AEAKPVGLSIAGEGGVASSKPNAVALSGRNGLAVASPKATAIAGVSPEEA
AAFSISLPTRNQLVIKSPNLASEKASEDYDYNDVPLTVARFPLTRETPQQ
LVPVRISGGDSLVERWRTAIAEDYAARQALTKVAMPHPTPFIRMAPKLRL
HSE*

RE73943.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10496-PA 649 GF10496-PA 264..649 17..403 1652 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15844-PA 380 GG15844-PA 7..380 29..403 1889 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15132-PA 372 GH15132-PA 8..370 33..401 1307 73.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PI 403 CG11905-PI 1..403 1..403 1998 100 Plus
CG11905-PF 403 CG11905-PF 1..403 1..403 1998 100 Plus
CG11905-PB 403 CG11905-PB 1..403 1..403 1998 100 Plus
CG11905-PL 404 CG11905-PL 1..404 1..403 1983 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12070-PA 365 GI12070-PA 11..365 29..403 1205 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20696-PA 561 GL20696-PA 9..382 29..397 1443 83.6 Plus
Dper\GL20696-PA 561 GL20696-PA 392..513 257..380 538 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28286-PA 383 GA28286-PA 4..383 29..403 1470 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24360-PA 369 GM24360-PA 12..369 26..403 1797 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12436-PA 1315 GD12436-PA 941..1315 29..403 1929 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13339-PA 649 GJ13339-PA 300..649 31..403 1137 69.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17153-PA 371 GK17153-PA 3..371 28..403 1437 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22183-PA 390 GE22183-PA 16..390 29..403 1801 96 Plus

RE73943.hyp Sequence

Translation from 142 to 1353

> RE73943.hyp
MRFLVLSTLLLASLALGQAQQHGGLAVEHRSRSAPLVFEEHPYYGGLRGQ
LLQLRPQRDGSVGSFILQRQQPQLRAVPRDSDDTITISAASISAVADASG
ASSSSSSISASASDFNRIQSAAARLVAIQELAKRKGSFSEEDNKIYASSL
LELGQAAQSLAMLQQSGQIKDFSVLLQPDMFGNPQKQPANFGLEATNNPA
DQKIDEQKLDEVTEQQFSPDEQFLPPNNEDPYEDVNDSVSVMAPKKDAAV
AEAKPVGLSIAGEGGVASSKPNAVALSGRNGLAVASPKATAIAGVSPEEA
AAFSISLPTRNQLVIKSPNLASEKASEDYDYNDVPLTVARFPLTRETPQQ
LVPVRISGGDSLVERWRTAIAEDYAARQALTKVAMPHPTPFIRMAPKLRL
HSE*

RE73943.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PI 403 CG11905-PI 1..403 1..403 1998 100 Plus
CG11905-PF 403 CG11905-PF 1..403 1..403 1998 100 Plus
CG11905-PB 403 CG11905-PB 1..403 1..403 1998 100 Plus
CG11905-PL 404 CG11905-PL 1..404 1..403 1983 99.5 Plus