Clone RE74011 Report

Search the DGRC for RE74011

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:740
Well:11
Vector:pFlc-1
Associated Gene/TranscriptFlo2-RB
Protein status:RE74011.pep: gold
Preliminary Size:324
Sequenced Size:2793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14409 2002-01-01 Sim4 clustering to Release 2
CG32593 2003-07-07 Blastp of sequenced clone
Flo-2 2008-04-29 Release 5.5 accounting
Flo-2 2008-08-15 Release 5.9 accounting
Flo-2 2008-12-18 5.12 accounting

Clone Sequence Records

RE74011.complete Sequence

2793 bp (2793 high quality bases) assembled on 2003-07-07

GenBank Submission: BT009962

> RE74011.complete
GGCGTTTTTCCATCTCCAGCGTAAAGGGACTCGGTTCTTAAGAACGAACT
TTTCAGCGGAGCTTTCGGCAAAAGGAGTAAACAGCAAACAAATAAAACAT
AAATAGAGACCAACAAGTAGACGGCGACGAGGAACGACTCAACGATGGGC
AACATACACACGACGGGTCCCAATGAGGCGTTAATTGTTTCAGGTGGCTG
CTGTGGATCGACCAAGAAGCGCACGATTGTGGGCGGCTGGGCGTGGGCGT
GGTGGCTGGTAACCGATGTCCAGCGACTGTCCCTCAATGTGATGACCCTG
AATCCGATGTGCGAGAATGTGGAAACGTCGCAAGGTGTTCCGCTAACGGT
GACCGGAGTGGCTCAATGCAAGATCATGAAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCAT
ACGCAAGATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGG
CGGAGGCGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGC
GATGCAGCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGC
TGAGGTGGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCG
GCAACGATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCG
CCATCGATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAA
GATACCGGGGGCCAAGGCGTGAAACCTAATGGAATGGGATATCCAGGAAA
TGGCAATGACAACGTAACGCAGCGTAAAGGAATTGTAACCGATACAAAAA
CCAGATAAGGATAGACAACCGAATTAAGAAGAGACGACAGGAAGCGACAA
AATAAGATGGCGATAGTTTGCTAAAGAGGGGGCGTGCATTTGTTAGAGAG
AGAAAGAGGGGAAACAGCGAAACGAACTTGAAAAACTCAAGTTTCGAAAT
GAAATCGAACGTGTAGCTAAATGTACTCCGATATTATAATATATTTATAT
ATAATATATATATATATATATCTATATATATATATCTATATATATATATT
TGTATATTTATATGCACACATGCAATACACACATACACTTGTCTCGTCTG
TGTGGTGTCCTAGTGTGTGTGTGTGATGTTTGGCGGCGTAACAATCAAAA
ACAGAACACAAAAAACAACCAACGTTAATCTCAGCTAAAGTTATGCATTT
CGAACGCAACATTTTGTGGCCTTTTCTCTCGAAAACGAAAAACCGATAAC
TATAACAAGAAATCAACGTGAAATTTGTATAACTTTAAAACGAAAACCAT
TTAAGCAGAGTGTTAGCTATTTATTTACTATGCTATATATACTATATACA
TGCAGACTTGCTATACACAAAGAGCTCTTTCAATAAACACATAGAATTAT
ATAACAGACAGTGTTGTACAGCATATATGTATTATTTTACAGTGCTGTAG
AGATCTGTATAAGTAGTCTCTCTCCATCTCCTTCTTATACAATTTCTATC
TGCAACTAAAAACAAAAAAAAAAAAACAAACAAAAAGCTTACATACTTCC
AGGCAAATTAAATTATACATTATTATTTTTTTAATACATAACTAACTATT
TATTTGTTGATTCGTGCCTGTTTCTTTCGTTGAATTTTGTTAAACGATTA
CTTTTTACGGAATTGTGCCATATAAGGTGCAAACATTTTATATTTGTTTA
TTTTTGATTATTATACCAAATAATGCTTTGCTCGATCAATTTTATATCGC
ATATTGCAAAATAGTCGTATATTACTTTACAACACTGTTTTTTCGACAAT
TGGCGCTGCTTTACACCCCACACACACATTAACCAACACAAATGAGTTTG
AATTTATGTATTATTCTCAGTGCGCAAGAAAAAAATTAAGCCTAATTTCT
TGTTATACAAAGCGTTTATATAATCATGTTTGCCTCGTTTAATCATTTTT
TTATGTTTATTATTTATGTAACAACACATATTGAACTACGAATATGCATT
TAAAATTTTTGTACTTTATTCTTATACATTTTTTTTAGTTTATAGCAAAA
GGAAAGAAAAAATAAAGAAAATAATTGAAAAAAAAAAAAAAAA

RE74011.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Flo-2.k 3252 Flo-2.k 534..2938 380..2783 11910 99.8 Plus
Flo-2.m 3194 Flo-2.m 468..2872 380..2783 11910 99.8 Plus
Flo-2.i 3203 Flo-2.i 477..2881 380..2783 11910 99.8 Plus
Flo-2.m 3194 Flo-2.m 59..439 1..381 1905 100 Plus
Flo-2.i 3203 Flo-2.i 59..439 1..381 1905 100 Plus
Flo-2.k 3252 Flo-2.k 162..496 47..381 1675 100 Plus
Flo-2.k 3252 Flo-2.k 4..49 1..46 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14822262..14823799 1241..2777 7530 99.7 Plus
chrX 22417052 chrX 14820962..14821530 490..1058 2845 100 Plus
chrX 22417052 chrX 14814435..14814629 188..382 975 100 Plus
chrX 22417052 chrX 14822018..14822201 1059..1242 920 100 Plus
chrX 22417052 chrX 14731108..14731258 46..196 755 100 Plus
chrX 22417052 chrX 14816981..14817092 380..491 560 100 Plus
chrX 22417052 chrX 14729614..14729659 1..46 230 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14932046..14933589 1241..2783 7575 99.8 Plus
X 23542271 X 14930746..14931314 490..1058 2845 100 Plus
X 23542271 X 14924220..14924414 188..382 975 100 Plus
X 23542271 X 14931802..14931985 1059..1242 920 100 Plus
X 23542271 X 14840872..14841022 46..196 755 100 Plus
X 23542271 X 14926764..14926875 380..491 560 100 Plus
X 23542271 X 14839378..14839423 1..46 230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14940144..14941687 1241..2783 7605 99.8 Plus
X 23527363 X 14938844..14939412 490..1058 2845 100 Plus
X 23527363 X 14932318..14932512 188..382 975 100 Plus
X 23527363 X 14939900..14940083 1059..1242 920 100 Plus
X 23527363 X 14848970..14849120 46..196 755 100 Plus
X 23527363 X 14934862..14934973 380..491 560 100 Plus
X 23527363 X 14847476..14847521 1..46 230 100 Plus
Blast to na_te.dros performed 2019-03-16 00:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1059..1176 2643..2765 145 61.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1135..1277 2763..2624 131 56.6 Minus
F-element 4708 F-element F 4708bp 4649..4703 2182..2236 131 70.9 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1229..1391 2432..2274 122 58.3 Minus

RE74011.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:04:34 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14729614..14729659 1..46 100 -> Plus
chrX 14731109..14731255 47..193 100 -> Plus
chrX 14814441..14814628 194..381 100 -> Plus
chrX 14816983..14817091 382..490 100 -> Plus
chrX 14820963..14821530 491..1058 100 -> Plus
chrX 14822018..14822201 1059..1242 100 -> Plus
chrX 14822264..14823799 1243..2777 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:12:29 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..1278 145..1422 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:14 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..1278 145..1422 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:53 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 1..1323 145..1467 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:51 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..1278 145..1422 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:16 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 1..1323 145..1467 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:12:28 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..2778 1..2777 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:13 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..2778 1..2777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:53 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 3..2780 1..2777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:51 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..2778 1..2777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:16 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 3..2780 1..2777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:34 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
X 14924226..14924413 194..381 100 -> Plus
X 14926766..14926874 382..490 100 -> Plus
X 14931802..14931985 1059..1242 100 -> Plus
X 14839378..14839423 1..46 100 -> Plus
X 14840873..14841019 47..193 100 -> Plus
X 14930747..14931314 491..1058 100 -> Plus
X 14932048..14933583 1243..2777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:34 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
X 14924226..14924413 194..381 100 -> Plus
X 14926766..14926874 382..490 100 -> Plus
X 14931802..14931985 1059..1242 100 -> Plus
X 14839378..14839423 1..46 100 -> Plus
X 14840873..14841019 47..193 100 -> Plus
X 14930747..14931314 491..1058 100 -> Plus
X 14932048..14933583 1243..2777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:34 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
X 14924226..14924413 194..381 100 -> Plus
X 14926766..14926874 382..490 100 -> Plus
X 14931802..14931985 1059..1242 100 -> Plus
X 14839378..14839423 1..46 100 -> Plus
X 14840873..14841019 47..193 100 -> Plus
X 14930747..14931314 491..1058 100 -> Plus
X 14932048..14933583 1243..2777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:53 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14733411..14733456 1..46 100 -> Plus
arm_X 14734906..14735052 47..193 100 -> Plus
arm_X 14818259..14818446 194..381 100 -> Plus
arm_X 14820799..14820907 382..490 100 -> Plus
arm_X 14824780..14825347 491..1058 100 -> Plus
arm_X 14825835..14826018 1059..1242 100 -> Plus
arm_X 14826081..14827616 1243..2777 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:59 Download gff for RE74011.complete
Subject Subject Range Query Range Percent Splice Strand
X 14938845..14939412 491..1058 100 -> Plus
X 14939900..14940083 1059..1242 100 -> Plus
X 14940146..14941681 1243..2777 99   Plus
X 14847476..14847521 1..46 100 -> Plus
X 14848971..14849117 47..193 100 -> Plus
X 14932324..14932511 194..381 100 -> Plus
X 14934864..14934972 382..490 100 -> Plus

RE74011.hyp Sequence

Translation from 144 to 1421

> RE74011.hyp
MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVM
TLNPMCENVETSQGVPLTVTGVAQCKIMKADELLGTASEQFLGKSVKEIK
QTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEIL
SFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKS
AMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQ
RIRNEEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTL
AQAKQCQTIEGARAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQ
YGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDNITNDVTRLVAQ
LPPSINALTGVDLSKVLSKIPGAKA*

RE74011.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PB 425 CG32593-PB 1..425 1..425 2120 100 Plus
Flo2-PF 425 CG32593-PF 1..425 1..425 2120 100 Plus
Flo2-PL 440 CG32593-PL 1..425 1..425 2120 100 Plus
Flo2-PI 435 CG32593-PI 1..435 1..425 2099 97.7 Plus
Flo2-PA 438 CG32593-PA 1..438 1..425 2096 97 Plus

RE74011.pep Sequence

Translation from 144 to 1421

> RE74011.pep
MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVM
TLNPMCENVETSQGVPLTVTGVAQCKIMKADELLGTASEQFLGKSVKEIK
QTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEIL
SFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKS
AMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQ
RIRNEEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTL
AQAKQCQTIEGARAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQ
YGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDNITNDVTRLVAQ
LPPSINALTGVDLSKVLSKIPGAKA*

RE74011.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19486-PA 438 GF19486-PA 1..438 1..425 2183 95.4 Plus
Dana\GF22637-PA 430 GF22637-PA 7..425 6..415 890 47.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17854-PA 438 GG17854-PA 1..438 1..425 2218 97 Plus
Dere\GG22345-PA 430 GG22345-PA 7..425 6..415 902 48 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12759-PA 432 GH12759-PA 9..432 15..425 2065 93.2 Plus
Dgri\GH20287-PA 430 GH20287-PA 7..425 6..415 889 47 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PB 425 CG32593-PB 1..425 1..425 2120 100 Plus
Flo2-PF 425 CG32593-PF 1..425 1..425 2120 100 Plus
Flo2-PL 440 CG32593-PL 1..425 1..425 2120 100 Plus
Flo2-PI 435 CG32593-PI 1..435 1..425 2099 97.7 Plus
Flo2-PA 438 CG32593-PA 1..438 1..425 2096 97 Plus
Flo2-PK 438 CG32593-PK 1..438 1..425 2096 97 Plus
Flo2-PE 438 CG32593-PE 1..438 1..425 2096 97 Plus
Flo2-PJ 448 CG32593-PJ 1..448 1..425 2086 94.9 Plus
Flo2-PM 356 CG32593-PM 10..356 79..425 1689 99.7 Plus
Flo2-PG 340 CG32593-PG 22..340 103..425 1513 96.9 Plus
Flo2-PH 281 CG32593-PH 1..281 145..425 1372 100 Plus
Flo2-PD 281 CG32593-PD 1..281 145..425 1372 100 Plus
Flo1-PA 426 CG8200-PA 7..421 6..415 961 48.7 Plus
Flo1-PB 430 CG8200-PB 7..425 6..415 946 48.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15205-PA 429 GI15205-PA 2..429 11..425 2077 93 Plus
Dmoj\GI19457-PA 430 GI19457-PA 7..425 6..415 887 47.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27073-PA 425 GL27073-PA 4..425 17..425 2106 95.5 Plus
Dper\GL11508-PA 430 GL11508-PA 7..425 6..415 905 47.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23027-PA 438 GA23027-PA 1..438 1..425 2194 95.7 Plus
Dpse\GA20892-PA 430 GA20892-PA 7..425 6..415 905 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12049-PA 438 GM12049-PA 1..438 1..425 2217 97 Plus
Dsec\GM20133-PA 430 GM20133-PA 7..425 6..415 909 48.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\anon-381MEL-PA 438 GD17182-PA 1..438 1..425 2217 97 Plus
Dsim\GD25610-PA 430 GD25610-PA 7..425 6..415 909 48.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16615-PA 356 GJ16615-PA 10..356 79..425 1752 97.1 Plus
Dvir\GJ21208-PA 430 GJ21208-PA 7..425 6..415 886 47 Plus
Dvir\GJ14117-PA 78 GJ14117-PA 1..31 50..80 156 87.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20117-PA 438 GK20117-PA 1..438 1..425 2188 95.4 Plus
Dwil\GK21951-PA 430 GK21951-PA 7..425 6..415 905 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17157-PA 438 GE17157-PA 1..438 1..425 2217 97 Plus
Dyak\GE14146-PA 430 GE14146-PA 7..425 6..415 904 48 Plus