Clone RE74146 Report

Search the DGRC for RE74146

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:741
Well:46
Vector:pFlc-1
Associated Gene/TranscriptCG5033-RB
Protein status:RE74146.pep: full length peptide match
Preliminary Size:2507
Sequenced Size:2581

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5033 2003-01-01 Sim4 clustering to Release 3
CG5033 2003-02-13 Blastp of sequenced clone
CG5033 2008-04-29 Release 5.5 accounting
CG5033 2008-08-15 Release 5.9 accounting
CG5033 2008-12-18 5.12 accounting

Clone Sequence Records

RE74146.complete Sequence

2581 bp (2581 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003755

> RE74146.complete
ATCGCTGACTGCAACACGTGCGCCGCGTTAGTTTTGTTTTTACCTCAAAA
TGACCAAAAAACTAGCTCTGAAACGCAGAGGAAAGGATTCGGAACCCACA
AATGAAGTGGTGGCCAGTTCCGAGGCTTCCGAAAACGAGGAGGAGGAGGA
GGTAAGACCCATTGACAGTGATATAAAAAGTCATTTCAAAATGACCTGCA
TGTGTGTTTGTGCTCTTTAAGGACCTGCTGCAAGCTGTAAAAGATCCCGG
CGAAGATTCAACAGATGACGAGGGCATAGACCAGGAATACCACTCGGATT
CCAGTGAGGAACTGCAGTTCGAGAGCGATGAGGAGGGCAACTACTTGGGC
AGAAAGCAATCTTCATCAGCTGAGGAAGATGAAGAAAGTAGTGATGAAGA
GGATAATGAAGAGGAGGAAAGCACTGATGGAGAGGAAGTGGAAGATGAGG
AGAAGGATTCCAAGTCAAAGCAAACAGACGATAAGCCCAGTGGAAGCGGT
GCCGCGTCTAAAAAAGCCCTTACAGCAGAGCTCCCGAAACGGGATAGCTC
GAAGCCTGAGTATCAGGATTCAGATACCTCCGACGAGGAGGACATAAGAA
ATACTGTAGGCAACATACCCATGCACTGGTACGACGAATACAAGCACATC
GGTTACGACTGGGATGCCAAGAAGATTATTAAACCACCACAAGGAGATCA
AATTGATGAGTTCCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCG
TCAAGGATCCACTTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATT
GCTCTGATCAAGCGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGA
AGAGTATGAGCCCTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGC
CCATCAAGAACGTACCCGACCACAAACGCTCTTTCCTGCCCTCAGTTTCC
GAGAAAAAGCGCGTCTCTCGCATGGTGCACGCCCTCAAAATGGGCTGGAT
GAAGACCACTGAGGAAGTGGAACGCGAGAAGCAGGCCAAGCGCGGTCCCA
AGTTCTACATGCTGTGGGAAACGGACACCAGTCGGGAACACATGCGCCGC
ATCCACGATCCAGTCTCTGCGCCCAAACGCGACCTTCCCGGTCATGCCGA
GTCCTACAATCCACCGCCAGAGTATCTTTTCGATGCCAAGGAGACCAAGG
AGTGGCTTAAACTAAAGGACGAGCCACACAAGCGCAAGCTGCACTTCATG
CCACAGAAGTTCAAGTCGCTGAGGGAGGTGCCCGCATACTCGAGATACCT
TCGGGAGCGTTTCCTTCGTTGCCTGGATCTTTACCTGTGTCCCCGTGCAA
AGCGTGTCAAGCTGAACATCGATGCCGAGTACCTTATCCCCAAGTTGCCC
TCGCCGCGTGACCTGCAACCCTTTCCCACGGTGGAGAGTATGGTTTACCG
TGGCCACACCGATCTGGTGCGGTCTGTTAGTGTGGAGCCCAAGGGAGAGT
ACCTCGTCTCCGGTTCGGATGATAAAACCGTCAAGATTTGGGAAATTGCA
ACAGGTCGTTGCATTCGCACAATCGAGACCGACGAAGTGGTACGCTGTGT
GGCTTGGTGTCCAAATCCCAAGCTGTCTATTATTGCGGTGGCCACTGGCA
ATCGCTTGCTGCTCGTCAATCCTAAAGTGGGCGATAAGGTGCTGGTGAAG
AAGACCGACGATCTCTTGGCTGAGGCGCCCAGTCAGGATGTCATTGAAAG
TGAACGCATCAAGACGGCGGTGCAATGGTCAAATGCGGAAGCTGATGAGC
AGGAGAAGGGCGTCCGCGTAGTGATTACCCACTTCAAACCCATCCGACAG
GTGACCTGGCACGGTCGTGGTGACTACTTGGCCACAGTGATGCCCGAAGG
TGCTAACCGCTCGGCTTTAATTCATCAGTTGTCCAAGCGGCGCTCACAGA
TTCCATTCTCCAAGAGCAAGGGTCTCATCCAATTCGTGCTCTTCCATCCG
GTGAAGCCCTGCTTCTTTGTGGCGACGCAACACAACATTCGCATTTATGA
TCTGGTCAAACAAGAGCTTGTCAAGAAGCTGCTGACCAACTCCAAATGGA
TATCGGGCATGTCTATTCATCCCAAGGGCGACAATCTGCTGGTGTCCACC
TATGACAAAAAGATGCTCTGGTTCGATTTGGATCTGTCCACAAAGCCCTA
CCAGACCATGCGACTCCATCGCAATGCAGTTCGCAGTGTTGCTTTCCATC
TTCGATATCCGCTCTTTGCTTCCGGCAGCGATGACCAGGCTGTGATCGTC
TCCCATGGCATGGTCTATAATGACCTGCTGCAAAACCCTTTGATTGTGCC
TCTCAAGAAGCTGCAAACACACGAGAAACGCGATGAGTTTGGTGTGCTGG
ATGTTAACTGGCATCCGGTGCAGCCATGGGTCTTCTCCACGGGCGCGGAC
AGTACCATCCGACTATACACGTAATTTAGGTGTACAAACCCCAAGAAAGT
TTCTTTTAGTTTCCGAAAGTTTTGTGAAATTTCAATAGTAAATAAAAAAT
ATATTAATTTTTATGAAAAAAAAAAAAAAAA

RE74146.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5033-RB 2591 CG5033-RB 16..2584 1..2569 12845 100 Plus
CG5033-RA 2597 CG5033-RA 226..2575 220..2569 11750 100 Plus
CG5033-RA 2597 CG5033-RA 77..228 1..152 760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13676851..13678386 1..1536 7680 100 Plus
chr2R 21145070 chr2R 13678450..13678937 1537..2024 2425 99.8 Plus
chr2R 21145070 chr2R 13678997..13679293 2024..2320 1485 100 Plus
chr2R 21145070 chr2R 13679357..13679601 2321..2565 1225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17789698..17791233 1..1536 7680 100 Plus
2R 25286936 2R 17791297..17791784 1537..2024 2440 100 Plus
2R 25286936 2R 17791844..17792140 2024..2320 1485 100 Plus
2R 25286936 2R 17792204..17792452 2321..2569 1245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17790897..17792432 1..1536 7680 100 Plus
2R 25260384 2R 17792496..17792983 1537..2024 2440 100 Plus
2R 25260384 2R 17793043..17793339 2024..2320 1485 100 Plus
2R 25260384 2R 17793403..17793651 2321..2569 1245 100 Plus
Blast to na_te.dros performed 2019-03-16 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 8356..8389 2527..2560 125 85.3 Plus

RE74146.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13679357..13679573 2321..2537 100 -> Plus
chr2R 13678998..13679293 2025..2320 100 -> Plus
chr2R 13676851..13677221 1..371 100 == Plus
chr2R 13677308..13678386 458..1536 100 -> Plus
chr2R 13678450..13678937 1537..2024 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:11 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 1..100 50..149 100 == Plus
CG5033-RA 101..2355 220..2474 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:15 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 1..100 50..149 100 == Plus
CG5033-RA 101..2355 220..2474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:46 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 1..100 50..149 100 == Plus
CG5033-RA 101..2355 220..2474 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:23 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 1..100 50..149 100 == Plus
CG5033-RA 101..2355 220..2474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 1..100 50..149 100 == Plus
CG5033-RA 101..2355 220..2474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:04:46 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RB 1..2565 1..2565 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:15 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RB 1..2565 1..2565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:46 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 20..168 1..149 100 == Plus
CG5033-RA 169..2514 220..2565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:23 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RB 1..2565 1..2565 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
CG5033-RA 20..168 1..149 100 == Plus
CG5033-RA 169..2514 220..2565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17789698..17791233 1..1536 100 -> Plus
2R 17791297..17791784 1537..2024 100 -> Plus
2R 17791845..17792140 2025..2320 100 -> Plus
2R 17792204..17792448 2321..2565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17789698..17791233 1..1536 100 -> Plus
2R 17791297..17791784 1537..2024 100 -> Plus
2R 17791845..17792140 2025..2320 100 -> Plus
2R 17792204..17792448 2321..2565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:21 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17789698..17791233 1..1536 100 -> Plus
2R 17791297..17791784 1537..2024 100 -> Plus
2R 17791845..17792140 2025..2320 100 -> Plus
2R 17792204..17792448 2321..2565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:46 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13677203..13678738 1..1536 100 -> Plus
arm_2R 13678802..13679289 1537..2024 100 -> Plus
arm_2R 13679350..13679645 2025..2320 100 -> Plus
arm_2R 13679709..13679953 2321..2565 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:06 Download gff for RE74146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17790897..17792432 1..1536 100 -> Plus
2R 17792496..17792983 1537..2024 100 -> Plus
2R 17793044..17793339 2025..2320 100 -> Plus
2R 17793403..17793647 2321..2565 100   Plus

RE74146.pep Sequence

Translation from 620 to 2473

> RE74146.pep
MHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTG
QDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPD
HKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWE
TDTSREHMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKD
EPHKRKLHFMPQKFKSLREVPAYSRYLRERFLRCLDLYLCPRAKRVKLNI
DAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVRSVSVEPKGEYLVSGSD
DKTVKIWEIATGRCIRTIETDEVVRCVAWCPNPKLSIIAVATGNRLLLVN
PKVGDKVLVKKTDDLLAEAPSQDVIESERIKTAVQWSNAEADEQEKGVRV
VITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRSQIPFSKSK
GLIQFVLFHPVKPCFFVATQHNIRIYDLVKQELVKKLLTNSKWISGMSIH
PKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFA
SGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPV
QPWVFSTGADSTIRLYT*

RE74146.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11675-PA 793 GF11675-PA 177..793 1..617 3169 94.3 Plus
Dana\GF10412-PA 403 GF10412-PA 14..296 276..560 183 25.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21824-PA 784 GG21824-PA 168..784 1..617 3329 100 Plus
Dere\GG13777-PA 390 GG13777-PA 14..296 276..560 201 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22027-PA 786 GH22027-PA 170..786 1..617 3154 94 Plus
Dgri\GH14795-PA 404 GH14795-PA 15..297 276..560 191 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5033-PA 784 CG5033-PA 168..784 1..617 3294 100 Plus
Poc1-PA 391 CG10191-PA 14..296 276..560 182 24.1 Plus
Poc1-PB 403 CG10191-PB 14..296 276..560 182 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19116-PA 792 GI19116-PA 176..792 1..617 3157 94.2 Plus
Dmoj\GI11850-PA 402 GI11850-PA 5..293 269..559 192 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17224-PA 785 GL17224-PA 169..785 1..617 3125 93.5 Plus
Dper\GL15696-PA 413 GL15696-PA 14..296 276..560 190 25.6 Plus
Dper\GL21559-PA 413 GL21559-PA 14..296 276..560 176 25.3 Plus
Dper\GL25364-PA 413 GL25364-PA 14..296 276..560 167 25 Plus
Dper\GL25365-PA 413 GL25365-PA 14..296 276..560 167 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18610-PA 786 GA18610-PA 170..786 1..617 3130 93.5 Plus
Dpse\GA10144-PA 413 GA10144-PA 14..296 276..560 188 25.3 Plus
Dpse\GA26333-PB 299 GA26333-PB 14..296 276..560 182 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21825-PA 784 GM21825-PA 168..784 1..617 3323 99.7 Plus
Dsec\GM24599-PA 389 GM24599-PA 14..296 276..560 195 23 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11318-PA 1375 GD11318-PA 989..1375 231..617 2069 99.5 Plus
Dsim\GD11318-PA 1375 GD11318-PA 168..363 1..196 1071 99.5 Plus
Dsim\GD12669-PA 389 GD12669-PA 14..296 276..560 196 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22246-PA 780 GJ22246-PA 164..780 1..617 3136 93.5 Plus
Dvir\GJ13548-PA 405 GJ13548-PA 11..293 276..559 191 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22227-PA 778 GK22227-PA 161..778 1..617 3120 93.4 Plus
Dwil\GK10412-PA 414 GK10412-PA 14..296 276..560 199 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11901-PA 784 GE11901-PA 168..784 1..617 3330 99.8 Plus
Dyak\GE20071-PA 391 GE20071-PA 14..296 276..560 192 24.1 Plus

RE74146.hyp Sequence

Translation from 620 to 2473

> RE74146.hyp
MHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTG
QDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPD
HKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWE
TDTSREHMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKD
EPHKRKLHFMPQKFKSLREVPAYSRYLRERFLRCLDLYLCPRAKRVKLNI
DAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVRSVSVEPKGEYLVSGSD
DKTVKIWEIATGRCIRTIETDEVVRCVAWCPNPKLSIIAVATGNRLLLVN
PKVGDKVLVKKTDDLLAEAPSQDVIESERIKTAVQWSNAEADEQEKGVRV
VITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRSQIPFSKSK
GLIQFVLFHPVKPCFFVATQHNIRIYDLVKQELVKKLLTNSKWISGMSIH
PKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFA
SGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPV
QPWVFSTGADSTIRLYT*

RE74146.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5033-PA 784 CG5033-PA 168..784 1..617 3294 100 Plus
Poc1-PA 391 CG10191-PA 14..296 276..560 182 24.1 Plus
Poc1-PB 403 CG10191-PB 14..296 276..560 182 24.1 Plus