BDGP Sequence Production Resources |
Search the DGRC for RE74350
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 743 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL9-RA |
Protein status: | RE74350.pep: gold |
Preliminary Size: | 1146 |
Sequenced Size: | 776 |
Gene | Date | Evidence |
---|---|---|
CG6141 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6141 | 2005-05-17 | Blastp of sequenced clone |
RpL9 | 2008-04-29 | Release 5.5 accounting |
RpL9 | 2008-08-15 | Release 5.9 accounting |
RpL9 | 2008-12-18 | 5.12 accounting |
776 bp (776 high quality bases) assembled on 2005-05-17
GenBank Submission: BT022718
> RE74350.complete GCATTTTGTGCGCCTCACACAGCCACATTAAATTTCCCTTCTTTTCTTTT CCCCGTTTCCGCGAGGAGTCCATCCAGAATTTGTGTCATACAAACGAGGG ACTAACGGAGCTGTCATCAAGATGCGTACCATTAATTCCAACCAGTGCGT GAAGATCCCTAAGGATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCA TCACCGGCACCCGCGGCACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTG GACATGTACATGCCCGACAAGCGCACCCTGAAGGTGGAGAAGTGGTTCGG AACCAAGAAGGAGTTGGCCGCCGTCCGCACCGTCTGCAGTCACATCGAGA ACATGATCAAGGGAGTCACGTTTGGATTCCAGTACAAGATGCGTGCTGTG TACGCCCATTTCCCCATCAACTGTGTCACCTCCGAGAACAACACGGTCAT TGAGATCCGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGG CTCCTGGCGTCACCGTGGTCAACTCCACTGCCCAGAAGGACGAACTTATC GTGGAGGGAAACGATATTGAGTCTGTCTCCGGATCTGCCGCCCTCATCCA GCAGTCCACGACCGTCAAGAACAAGGATATCCGTAAGTTCCTTGACGGTC TGTACGTGTCCGAGAAGACGACCGTTGTGAAGCTAGAGTCTTAGACTTTT GGAATGTGTTTCAACCTAAAATGTTAATAAAAAAAAACCAACGGCCGAAA CTTTCAATAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 11001596..11001995 | 761..362 | 2000 | 100 | Minus |
chr2L | 23010047 | chr2L | 11002266..11002517 | 363..112 | 1260 | 100 | Minus |
chr2L | 23010047 | chr2L | 11002885..11002945 | 61..1 | 305 | 100 | Minus |
chr2L | 23010047 | chr2L | 11002762..11002812 | 111..61 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11002837..11003239 | 764..362 | 2015 | 100 | Minus |
2L | 23513712 | 2L | 11003510..11003761 | 363..112 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 11004129..11004189 | 61..1 | 305 | 100 | Minus |
2L | 23513712 | 2L | 11004006..11004056 | 111..61 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11002837..11003239 | 764..362 | 2015 | 100 | Minus |
2L | 23513712 | 2L | 11003510..11003761 | 363..112 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 11004129..11004189 | 61..1 | 305 | 100 | Minus |
2L | 23513712 | 2L | 11004006..11004056 | 111..61 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5391..5458 | 676..740 | 107 | 66.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11001596..11001994 | 363..761 | 100 | <- | Minus |
chr2L | 11002267..11002517 | 112..362 | 100 | <- | Minus |
chr2L | 11002762..11002811 | 62..111 | 100 | <- | Minus |
chr2L | 11002885..11002945 | 1..61 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RB | 1..573 | 122..694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RB | 1..573 | 122..694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..573 | 122..694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RB | 1..573 | 122..694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..573 | 122..694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..761 | 1..761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..761 | 1..761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..761 | 1..761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..761 | 1..761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL9-RA | 1..761 | 1..761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11002840..11003238 | 363..761 | 100 | <- | Minus |
2L | 11003511..11003761 | 112..362 | 100 | <- | Minus |
2L | 11004006..11004055 | 62..111 | 100 | <- | Minus |
2L | 11004129..11004189 | 1..61 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11002840..11003238 | 363..761 | 100 | <- | Minus |
2L | 11003511..11003761 | 112..362 | 100 | <- | Minus |
2L | 11004006..11004055 | 62..111 | 100 | <- | Minus |
2L | 11004129..11004189 | 1..61 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11002840..11003238 | 363..761 | 100 | <- | Minus |
2L | 11003511..11003761 | 112..362 | 100 | <- | Minus |
2L | 11004006..11004055 | 62..111 | 100 | <- | Minus |
2L | 11004129..11004189 | 1..61 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11002840..11003238 | 363..761 | 100 | <- | Minus |
arm_2L | 11003511..11003761 | 112..362 | 100 | <- | Minus |
arm_2L | 11004006..11004055 | 62..111 | 100 | <- | Minus |
arm_2L | 11004129..11004189 | 1..61 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11002840..11003238 | 363..761 | 100 | <- | Minus |
2L | 11003511..11003761 | 112..362 | 100 | <- | Minus |
2L | 11004006..11004055 | 62..111 | 100 | <- | Minus |
2L | 11004129..11004189 | 1..61 | 100 | Minus |
Translation from 121 to 693
> RE74350.pep MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDK RTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPIN CVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIE SVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVKLES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14045-PA | 190 | GF14045-PA | 1..190 | 1..190 | 983 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10334-PA | 190 | GG10334-PA | 1..190 | 1..190 | 1000 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10761-PA | 190 | GH10761-PA | 1..190 | 1..190 | 976 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL9-PC | 190 | CG6141-PC | 1..190 | 1..190 | 960 | 100 | Plus |
RpL9-PB | 190 | CG6141-PB | 1..190 | 1..190 | 960 | 100 | Plus |
RpL9-PA | 190 | CG6141-PA | 1..190 | 1..190 | 960 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20564-PA | 190 | GI20564-PA | 1..190 | 1..190 | 975 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23890-PA | 190 | GL23890-PA | 1..190 | 1..190 | 991 | 98.4 | Plus |
Dper\GL19015-PA | 190 | GL19015-PA | 1..190 | 1..190 | 991 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19385-PA | 190 | GA19385-PA | 1..190 | 1..190 | 991 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11214-PA | 190 | GM11214-PA | 1..190 | 1..190 | 1007 | 100 | Plus |
Dsec\GM15467-PA | 111 | GM15467-PA | 2..87 | 84..169 | 434 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22204-PA | 190 | GD22204-PA | 1..190 | 1..190 | 1007 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13905-PA | 190 | GJ13905-PA | 1..190 | 1..190 | 979 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14887-PA | 190 | GK14887-PA | 1..190 | 1..190 | 976 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\RpL9-PA | 190 | GE13088-PA | 1..190 | 1..190 | 992 | 98.9 | Plus |
Translation from 121 to 693
> RE74350.hyp MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDK RTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPIN CVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIE SVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVKLES*