Clone RE74471 Report

Search the DGRC for RE74471

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:744
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCG32816-RD
Protein status:RE74471.pep: gold
Sequenced Size:1830

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32816 2005-08-10 Manual selection by Joe Carlson
CG32816 2008-04-29 Release 5.5 accounting
CG32816 2008-04-29 Picked prior to 5.5
CG32816 2008-08-15 Release 5.9 accounting
CG32816 2008-12-18 5.12 accounting

Clone Sequence Records

RE74471.complete Sequence

1830 bp assembled on 2007-11-20

GenBank Submission: BT031292

> RE74471.complete
AGACCGTTGATGGCGTTCGCTGGAACCGCTTGGCACACGTCGCGTTACTT
GGCCGCCAGCGCGATTTAAACCGCCAGTTGACAAAGTGCGTTTTGTACCC
CACTTGCGAGCCCCGTAACCCCCGAAAAAATTGTGGTTGCTTTGCAGCTT
CAGCGACGAATTTACCGATAGAAAGGTATTTCCCAATAACACATATTTGC
TTTTATAAAACGCATTAAAAAGACAAAATACAAATATGGCATTGTCGAAG
AAACTAAGCAGCAAAATCTATCGGAGCAGCAGACAAAAAAATGTTAACGT
TTTGGGAAAAGACATCAAAAAAATCAGCAGATATACCAAACCAAATCAGC
GGAGCACTTGCATCAAGTAACTTAGCTATCTGCGCCTGTCTAATAGTAAT
CTTCATTGCATCTGTAACCACGGCCAAAACACCGGATCAGGAAGCTATCC
ATCACAAAAATGACGAATTTCCGGAAGAGGAAAGCGACATGGTGATGGAG
CCAAATGATTTTTCGCCAATCACTGTACTAAAGTCACATGAACAACACTT
TCATATGCCGCCCACAACGCATCTTCAGCCACAAGTTCAAGCTAGAATTC
ATCCTAGAGTTCAACCCAGAAAATTTCAATCCGCACTCCAACAAAATGCT
GAGGAGCCATTCCGGCCCATTGCTAATCCAAATACGAAGATTGTTGGCGA
TTCTCATACGCAGGCTGCCCAAAATTTCTACCCACCTTTCTACCATGAGG
CTCCTCCACTGGGCCATTCCAGACCTTACTTTGGTCACGGCCCGCCTGTA
TCGGAAACAACTCCTTTATCCTTACCCCTTCCGCTCTTGACAACTCAACA
GCAACAGCCAGCAACTCAGCAGCGGACTTTCGATGCCAGTATACTTGGAA
GTGGGGATTTTGGTGTCCTTAGAGGTGGAACCTTCTATCCGGAGGAGGAA
ATGCCCTATCACCCCGAAGATAACAGTGATTACATCTATGGAGATGCTAA
CAATGGACACGGTCGACCATCTGAGGGTTTTGTTCAAAAGTACACGTATC
CAGAGGAGCAGTTCGCTAATTTTCGCGATTTTGCCGATATCAACACGCCC
GCCGATACGGCGTTTTCGCAATTTGTGGTGGTGTATGCGGCCAAAAATGC
CTCTGTACCACACTCTCATCCGCATCCTAAAAACATATTTGAACAGTTAG
AGCAGCTGGACAGGGAAAAAGAGCTGAAAAATACCGAATTTGAGAACAAA
ACTTCTTCGAAAATAAAGTCGAAATTGTCTAATACAAAGTTGCAAAAAAA
ATACCGAAAAAAAACGGCCCCCAAAGTCCAGGATCCTCAAGAAATAGAGC
CTTTACTAGCTCTAAGTTAAGCGTCAAAAAGAATAACCCTATAAGCCAGA
ACCCAAACTTTCGAATACCGTTGTTAGATTTATTTATTATATTTCGAGAT
AAACGCAAGCCACAACAAAATAGCCACCCCAATTTCCATGTCAACAAATG
CAAGCACTTTATCTAATACATATACATATACTTTTTCAGTTTTTTTTTTG
TCTGTCTGCTTTTAATCTCGCAATGTTTGTTAAATTTTTAAATTAGCCCG
TAGTCTACTACATATATATTACATTTTTATATAAATATATATAAAATATA
TTTTATGCGCAACTATAATGTAATTCTTTTTGTCCAATTAAGCATAAATT
TATTATGTGTGTGTACATAAAACCAGATATGATAATTGTAATTTAATACC
TAAATAAAATTGATTTAAAAAATAGTACACAAATAATAATTTAATAAATT
ACTTTATTGAGTCACAAAAAAAAAAAAAAA

RE74471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32816-RA 1819 CG32816-RA 3..1818 1..1814 9025 99.8 Plus
CG32816-RB 1853 CG32816-RB 184..1852 148..1814 8290 99.8 Plus
CG32816.d 1775 CG32816.d 130..1774 172..1814 8155 99.8 Plus
CG32816-RB 1853 CG32816-RB 53..183 1..131 655 100 Plus
CG32816.d 1775 CG32816.d 3..133 1..131 655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 210578..211930 1814..462 6765 100 Minus
chrX 22417052 chrX 227571..227903 462..132 1600 99.4 Minus
chrX 22417052 chrX 228673..228803 131..1 655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 316573..317929 1818..462 6770 99.9 Minus
X 23542271 X 333565..333897 462..132 1600 99.4 Minus
X 23542271 X 334667..334797 131..1 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 324671..326027 1818..462 6770 99.9 Minus
X 23527363 X 341663..341995 462..132 1610 99.3 Minus
X 23527363 X 342765..342895 131..1 655 100 Minus
Blast to na_te.dros performed 2019-03-15 11:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 2604..2722 1626..1754 124 62 Plus
micropia 5461 micropia DMDM11 5461bp 2014..2051 1350..1387 118 78.9 Plus

RE74471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:25:57 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 228673..228803 1..131 100   Minus
chrX 210577..211929 463..1815 99 <- Minus
chrX 227571..227903 132..462 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:47:55 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 1..1137 236..1370 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:49 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 1..1137 236..1370 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:28:31 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RB 1..1137 236..1370 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:05 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 1..1137 236..1370 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:32:55 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 1..1137 236..1370 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:54 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 3..1818 1..1815 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:49 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 3..1818 1..1815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:28:31 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 5..1820 1..1815 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:06 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 1..1372 1..1370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:55 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32816-RA 5..1820 1..1815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:25:57 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
X 316576..317928 463..1815 99 <- Minus
X 333565..333897 132..462 99 <- Minus
X 334667..334797 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:25:57 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
X 316576..317928 463..1815 99 <- Minus
X 333565..333897 132..462 99 <- Minus
X 334667..334797 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:25:57 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
X 316576..317928 463..1815 99 <- Minus
X 333565..333897 132..462 99 <- Minus
X 334667..334797 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:28:31 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 228700..228830 1..131 100   Minus
arm_X 210609..211961 463..1815 99 <- Minus
arm_X 227598..227930 132..462 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:06 Download gff for RE74471.complete
Subject Subject Range Query Range Percent Splice Strand
X 342765..342895 1..131 100   Minus
X 341663..341995 132..462 99 <- Minus
X 324674..326026 463..1815 99 <- Minus

RE74471.hyp Sequence

Translation from 235 to 1369

> RE74471.hyp
MALSKKLSSKIYRSSRQKKMLTFWEKTSKKSADIPNQISGALASSNLAIC
ACLIVIFIASVTTAKTPDQEAIHHKNDEFPEEESDMVMEPNDFSPITVLK
SHEQHFHMPPTTHLQPQVQARIHPRVQPRKFQSALQQNAEEPFRPIANPN
TKIVGDSHTQAAQNFYPPFYHEAPPLGHSRPYFGHGPPVSETTPLSLPLP
LLTTQQQQPATQQRTFDASILGSGDFGVLRGGTFYPEEEMPYHPEDNSDY
IYGDANNGHGRPSEGFVQKYTYPEEQFANFRDFADINTPADTAFSQFVVV
YAAKNASVPHSHPHPKNIFEQLEQLDREKELKNTEFENKTSSKIKSKLSN
TKLQKKYRKKTAPKVQDPQEIEPLLALS*

RE74471.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32816-PF 378 CG32816-PF 1..378 1..378 2000 100 Plus
CG32816-PE 378 CG32816-PE 1..378 1..378 2000 100 Plus
CG32816-PA 378 CG32816-PA 1..378 1..378 2000 100 Plus
CG32816-PB 378 CG32816-PB 1..378 1..378 2000 100 Plus
CG32816-PD 293 CG32816-PD 1..293 86..378 1573 100 Plus

RE74471.pep Sequence

Translation from 290 to 1369

> RE74471.pep
MLTFWEKTSKKSADIPNQISGALASSNLAICACLIVIFIASVTTAKTPDQ
EAIHHKNDEFPEEESDMVMEPNDFSPITVLKSHEQHFHMPPTTHLQPQVQ
ARIHPRVQPRKFQSALQQNAEEPFRPIANPNTKIVGDSHTQAAQNFYPPF
YHEAPPLGHSRPYFGHGPPVSETTPLSLPLPLLTTQQQQPATQQRTFDAS
ILGSGDFGVLRGGTFYPEEEMPYHPEDNSDYIYGDANNGHGRPSEGFVQK
YTYPEEQFANFRDFADINTPADTAFSQFVVVYAAKNASVPHSHPHPKNIF
EQLEQLDREKELKNTEFENKTSSKIKSKLSNTKLQKKYRKKTAPKVQDPQ
EIEPLLALS*

RE74471.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20816-PA 349 GF20816-PA 1..333 35..345 1099 74.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12764-PA 380 GG12764-PA 20..380 1..359 1618 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24763-PA 363 GH24763-PA 33..363 41..359 999 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32816-PF 378 CG32816-PF 20..378 1..359 1912 100 Plus
CG32816-PE 378 CG32816-PE 20..378 1..359 1912 100 Plus
CG32816-PA 378 CG32816-PA 20..378 1..359 1912 100 Plus
CG32816-PB 378 CG32816-PB 20..378 1..359 1912 100 Plus
CG32816-PD 293 CG32816-PD 1..293 67..359 1573 100 Plus
CG32816-PC 293 CG32816-PC 1..293 67..359 1573 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15795-PA 353 GI15795-PA 32..317 50..320 954 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20175-PA 341 GL20175-PA 7..328 59..345 988 65.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17161-PA 460 GA17161-PA 80..447 11..345 1050 61.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19044-PA 376 GM19044-PA 16..376 1..359 1635 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16483-PA 376 GD16483-PA 16..376 1..359 1657 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18648-PA 365 GJ18648-PA 24..365 41..359 932 64.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10129-PA 373 GK10129-PA 120..373 135..359 745 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16590-PA 381 GE16590-PA 20..381 1..359 1614 90.6 Plus