Clone RE74585 Report

Search the DGRC for RE74585

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:745
Well:85
Vector:pFlc-1
Associated Gene/TranscriptCG9775-RA
Protein status:RE74585.pep: gold
Preliminary Size:1646
Sequenced Size:1901

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9775 2002-10-18 Blastp of sequenced clone
CG9775 2003-01-01 Sim4 clustering to Release 3
CG9775 2008-04-29 Release 5.5 accounting
CG9775 2008-08-15 Release 5.9 accounting
CG9775 2008-12-18 5.12 accounting

Clone Sequence Records

RE74585.complete Sequence

1901 bp (1901 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001747

> RE74585.complete
GTCAGCCTGAAAAGCAGCGAGGAAAAACTTGAATTTCGTCTGTAAAACAT
ATCTAATCGGAACCAAGCCACTGAAAAAGTCGTAGTTTAGGCTAAATAAA
CGAGAAATCAACGAGTGAAACTAATTTCTATCTGTGGACAGAACGCCCCC
GCACCTATTTTTGTGCTGAGGAACAAGCGAAGCAGCGACGCACAATTCAG
AAATTTGCAAACCGGTTTTCGGCGCAGAAACACCCACTCGATCGTCCAAG
AGTCAAGCGGAGAACAGTGAAAACATACATTATAAGGATCAATTTATAAA
AGCAAAGCCGCAACAATCATGAACACTGGAATCTCCTTAAACGAGCGCTT
TACGCAGATGCAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCT
CCAGGAGCAGGAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGA
ATGTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACAC
CGTTCAGACGGCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAG
TCAGCGGTCGTGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCG
CCCAACGGGAAGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGAT
GCGTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCG
GCAGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTT
CGGCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCG
CGTTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCC
GCTCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCA
CGTTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCG
CGATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCA
AGCACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATC
CCACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACG
GGTCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAGGGAGTTTCCG
CCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATCTGTTGCAAGA
AACGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTTCTGCTCGTCG
CTCACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCCGCTATCGCCG
CTACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGGACGCAGTGCA
GGCGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTGACAAAAACGC
GAAGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCAGCAACAGGTTC
GACGGGGACGCAGTCGTAGTCGTAAGCCTACAGGCAAACCACAGCGTCCA
GAGGTTAAGCGCGAGGATCTTGACATGGAACTGGATCAGTATATGTCCAC
CACTAAGTCGGAGATGGACTACTTGCTGAAGTAAACACAAGTAGATTGGA
CCACAAACTATTGAATTAAAAACAATTGAATGAACAGAATGTAACAACCA
CCGGCTATAGGCAGATGTTTCTCTCGTTGCACTAAGTTACCGCCTAGTTT
TAAAATATTTCTAAGTTTTAAACCATGTTAAAAGCGTCCAAAAAGAGCGC
TTAGGCATAGAGATGTTCTCGTGTATATATGACAAGTTCTAATATAATAA
GTAAATATGGTCGAGAATTGTATAGTTCATGAATGATATTGTTAATCGCA
ATTCCGAAATACAAACTATTCATTGCTCAACTCAGAAAAAAAAAAAAAAA
A

RE74585.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RA 2108 CG9775-RA 121..2004 1..1884 9390 99.8 Plus
CG9775-RC 1749 CG9775-RC 67..1749 202..1884 8385 99.8 Plus
CG9775-RD 2552 CG9775-RD 1078..1918 648..1488 4190 99.8 Plus
CG9775-RD 2552 CG9775-RD 95..622 1..528 2625 99.8 Plus
CG9775-RD 2552 CG9775-RD 2046..2448 1482..1884 2000 99.7 Plus
CG9775-RD 2552 CG9775-RD 883..1002 529..648 600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 464728..465267 1187..648 2700 100 Minus
chr3R 27901430 chr3R 463719..464121 1884..1482 2000 99.8 Minus
chr3R 27901430 chr3R 465723..466046 528..205 1605 99.7 Minus
chr3R 27901430 chr3R 464249..464551 1488..1186 1500 99.7 Minus
chr3R 27901430 chr3R 467039..467242 204..1 1020 100 Minus
chr3R 27901430 chr3R 465343..465462 648..529 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:16:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4639018..4639557 1187..648 2700 100 Minus
3R 32079331 3R 4638009..4638411 1884..1482 2000 99.8 Minus
3R 32079331 3R 4640013..4640336 528..205 1605 99.7 Minus
3R 32079331 3R 4638539..4638841 1488..1186 1500 99.7 Minus
3R 32079331 3R 4641329..4641532 204..1 1020 100 Minus
3R 32079331 3R 4639633..4639752 648..529 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4379849..4380388 1187..648 2700 100 Minus
3R 31820162 3R 4378840..4379242 1884..1482 2000 99.7 Minus
3R 31820162 3R 4380844..4381167 528..205 1605 99.6 Minus
3R 31820162 3R 4379370..4379672 1488..1186 1500 99.6 Minus
3R 31820162 3R 4382160..4382363 204..1 1020 100 Minus
3R 31820162 3R 4380464..4380583 648..529 600 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:20:38 has no hits.

RE74585.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:21:27 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 463718..464119 1484..1885 99 <- Minus
chr3R 464254..464549 1188..1483 100 <- Minus
chr3R 464728..465267 648..1187 100 <- Minus
chr3R 465344..465462 529..647 100 <- Minus
chr3R 465723..466046 205..528 99 <- Minus
chr3R 467039..467242 1..204 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:25 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 1..1266 319..1584 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:07 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 1..1266 319..1584 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:05 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 1..1266 319..1584 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:59 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RC 1..1266 319..1584 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:42 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 1..1266 319..1584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:31:16 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 20..1903 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:07 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 64..1946 1..1883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:05 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 48..1930 1..1883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:59 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 20..1903 1..1885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:42 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
CG9775-RA 48..1930 1..1883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:21:27 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4638008..4638409 1484..1885 99 <- Minus
3R 4638544..4638839 1188..1483 100 <- Minus
3R 4639018..4639557 648..1187 100 <- Minus
3R 4639634..4639752 529..647 100 <- Minus
3R 4640013..4640336 205..528 99 <- Minus
3R 4641329..4641532 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:21:27 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4638008..4638409 1484..1885 99 <- Minus
3R 4638544..4638839 1188..1483 100 <- Minus
3R 4639018..4639557 648..1187 100 <- Minus
3R 4639634..4639752 529..647 100 <- Minus
3R 4640013..4640336 205..528 99 <- Minus
3R 4641329..4641532 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:21:27 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4638008..4638409 1484..1885 99 <- Minus
3R 4638544..4638839 1188..1483 100 <- Minus
3R 4639018..4639557 648..1187 100 <- Minus
3R 4639634..4639752 529..647 100 <- Minus
3R 4640013..4640336 205..528 99 <- Minus
3R 4641329..4641532 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:05 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 463730..464131 1484..1885 99 <- Minus
arm_3R 464266..464561 1188..1483 100 <- Minus
arm_3R 464740..465279 648..1187 100 <- Minus
arm_3R 465356..465474 529..647 100 <- Minus
arm_3R 465735..466058 205..528 99 <- Minus
arm_3R 467051..467254 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:34 Download gff for RE74585.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4378839..4379240 1484..1885 99 <- Minus
3R 4379375..4379670 1188..1483 100 <- Minus
3R 4379849..4380388 648..1187 100 <- Minus
3R 4380465..4380583 529..647 100 <- Minus
3R 4380844..4381167 205..528 99 <- Minus
3R 4382160..4382363 1..204 100   Minus

RE74585.hyp Sequence

Translation from 318 to 1583

> RE74585.hyp
MNTGISLNERFTQMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNS
RLLNEFKRLHTVQTALKLKRRSLRTTAVSGRGPRVAGVKSLRLAPNGKPI
RSNNVTRVATMRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQ
RRPSVGGAAERVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRG
RSIGRSQSRNRDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRA
PSQIRGVAGGRVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSS
GAVNNSASARRSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGK
IIRNGKADKNAKVKATNGVKSGPQQQVRRGRSRSRKPTGKPQRPEVKRED
LDMELDQYMSTTKSEMDYLLK*

RE74585.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-PE 421 CG9775-PE 1..421 1..421 2079 100 Plus
CG9775-PC 421 CG9775-PC 1..421 1..421 2079 100 Plus
CG9775-PA 421 CG9775-PA 1..421 1..421 2079 100 Plus
CG9775-PD 315 CG9775-PD 1..282 111..392 1378 99.3 Plus
CG9915-PC 820 CG9915-PC 77..493 23..407 199 26.4 Plus

RE74585.pep Sequence

Translation from 318 to 1583

> RE74585.pep
MNTGISLNERFTQMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNS
RLLNEFKRLHTVQTALKLKRRSLRTTAVSGRGPRVAGVKSLRLAPNGKPI
RSNNVTRVATMRADLVASGNAARNRRSGSSMRNVPATNGGGGGLRQRLGQ
RRPSVGGAAERVERRQRQQQQAPRGRSRSQSRSRHPQIQRVDRARSQSRG
RSIGRSQSRNRDRSAQGRVPVKQRLSVKHRLGVRTGQRNNQAKIPPQRRA
PSQIRGVAGGRVEKRRSAQISQKKGVSASIAGRQGRPRRRSVARNAASSS
GAVNNSASARRSRSRNRAAAVAAAAIAATVQGRANPRQRRGRSAGAAKGK
IIRNGKADKNAKVKATNGVKSGPQQQVRRGRSRSRKPTGKPQRPEVKRED
LDMELDQYMSTTKSEMDYLLK*

RE74585.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18351-PA 426 GF18351-PA 4..426 3..421 891 67.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11466-PA 423 GG11466-PA 1..423 1..421 1461 87.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19526-PA 451 GH19526-PA 2..169 1..160 349 54.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-PE 421 CG9775-PE 1..421 1..421 2079 100 Plus
CG9775-PC 421 CG9775-PC 1..421 1..421 2079 100 Plus
CG9775-PA 421 CG9775-PA 1..421 1..421 2079 100 Plus
CG9775-PD 315 CG9775-PD 1..282 111..392 1378 99.3 Plus
CG9915-PC 820 CG9915-PC 77..493 23..407 199 26.4 Plus
CG9915-PB 820 CG9915-PB 77..493 23..407 199 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23004-PA 441 GI23004-PA 409..441 389..421 176 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21736-PA 473 GL21736-PA 4..473 3..421 619 57.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22027-PA 461 GA22027-PA 2..461 1..421 624 55.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10692-PA 424 GM10692-PA 1..424 1..421 1614 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19666-PA 413 GD19666-PA 1..413 1..421 1596 93.1 Plus
Dsim\GD23878-PA 66 GD23878-PA 1..66 45..110 314 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24596-PA 457 GJ24596-PA 2..298 1..276 392 49.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13464-PA 425 GK13464-PA 2..425 1..421 608 49.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25342-PA 413 GE25342-PA 1..413 1..421 1195 83.8 Plus
Dyak\GE11129-PA 359 GE11129-PA 19..359 71..421 1015 82.6 Plus