Clone RE74757 Report

Search the DGRC for RE74757

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:747
Well:57
Vector:pFlc-1
Associated Gene/TranscriptPsGEF-RB
Protein status:RE74757.pep: gold
Preliminary Size:4602
Sequenced Size:2855

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14045 2002-01-01 Sim4 clustering to Release 2
CG14045 2003-01-01 Sim4 clustering to Release 3
CG14045 2008-04-29 Release 5.5 accounting
CG14045 2008-04-29 Picked prior to 5.5
CG14045 2008-08-15 Release 5.9 accounting
CG14045 2008-12-18 5.12 accounting
CG14045 2011-03-01 Transcript Validation

Clone Sequence Records

RE74757.complete Sequence

2855 bp (2855 high quality bases) assembled on 2005-11-03

GenBank Submission: BT024192

> RE74757.complete
ATTTTCCGTTTCTGAGCTCGTGCTAAGCAGACACGTGAACTTCATAGCAG
AAAAGAACGAAAATACCTTTGGCTTGAAGAAATTAGTTGGCTTATTTTTT
TTTTCGTGTAAAAGATCTATCAAAATTTGTGTGCCGCCGACGCGCAAGGA
TCACATTTTTAAACAAAATCAGTGCTGTTAATCAAGTTGAACCTAAGCTA
AATCGAGTTGCAGTTCGCCAGGCGACGTAGTCGCAAAAAGATCAAGTTAC
CAGTAGGGACATGCCAACCATGACACGGATGCATCGCCACTCCAGTTCCA
GTGCCGTGGTGGAGGAGTCGCGTGGCCGGCGCCGTGGAGTGGGCGTGCCA
GGAGTCGGAGACGCGAACAAGGAGAATTTCGGGGTGCACTTCATGAGCAG
TCCCTTCGGCAATGCCAGTTTGATTGCCCTGCAGGATTTGAGCAACGTGC
ACGGAAAGAGTCCGCAGCGCAGGAGTTTCAGCGAGGGCAGTGGTCCGCGG
CAGGCCACGCCACAATTGGCGGCACTGCGCTGCTTGCCACGCACCACCGG
TGGTGCAGTTGCTCTGGAGGATTCTCAGCTCTCCTCATCGCGAATGGGCG
ATACCACACTGGACCGCATGCTGGATGCCATCATAGAGTCGGCCAGGAAG
GAGGTGAGGTGTACGAAGACACTGCCAGGCGCCGGCGCCACCACTTCGAC
CACCATTTTGGCGGATAATGCCGAGTGGAGCGAGACCAGTGTCCACGAAA
TGGAGGTGCGCACGCCCACCCACTTGAAGCGGCAGCGGGTGGTGCGGCGC
AAGAACCCACACAAGACTACCACCATTAACCAAACGCAAAGTCACCAAGC
CAAGAAGTTGGAGCCACTGCAGTTGGTTCCCAGCACCAAACGCTGCCTGA
GCTTCTCATCCAGTTCCGCCTCGAGTGATTTGGACGAGGATGAGCAGCAG
GTGGCCAAGAGGAGTTCGCTGGCCTCCCCCACCACCACACCTCCCTCCCA
CTGCACCACCACCACCAGCAGCATCAGCAGCAGCAGCAGCAGTAATGGTG
GTGCGGACATGGAGGCCAGTCAGCGGGGCAGCATCGATGTGAGCATCGCA
TTCGATGCCAAGGAGCAGCAACTTAATGTACATGTGATTCGCTGTCGCGA
CTTGCAGCGCTCCCATGGCAGTGGAAACGGCAGCATCAACGCCTACGTCA
AGGTGGCCCTGTCCGGAGGAGCCCAGCCACCCGGATACGGTGGCCACTCG
TCGGGGGGAAGCATGAGTTCCGGGTACCAACGCACCGCCGTCCATCGGCA
CTCGGGCCGCCCGTACTTCGATCAGCGATTCAACTTCCAGATTTCCAGTG
GCGAGGAGACCGCTGGACAGTATCTTCAGTTGGCCGTGTGGCATCGGGAT
CGCCATTTAAAACGCAGCGAGTTCCTGGGCTGCAGCACTTTTCCACTGAA
TGAGTTAGTGCATCCGGATTCGGGCGTCTCGGCAGGATCCTACAAGCTGC
ATGCACAGGCATGTCCTCCGCCTACTAGCCGCCATAGCCAACCAAAAGCC
AACGCAGGCCAGGATCAAAAGCAGGAAACGGAAGCGGCGAAGGATCAGGA
TAAACAGCAGGACGATTCCCCCGCAGAAATGGCAGCAGCCGTCACAGTCA
CGCCCCAAAAACCGGTTGCCACTGGATCCGGTTCGGGATCGAATTCCGCA
GCGATGGCACTGAACGACGAGGTGATCAGCATTAGCATCGATAGCATGGG
CAAAGAGGATCCTCTGCTACCCCAGCAGCCCCAGCAGCCCATGAAGCTCA
GCAAGAAGGCACTCCACCAGCGAGATGCCGACGAGAATCTCTTTTTAAGA
TTCCTGGAGCTGGATCCGCCAGCGGATGGCAATGCAAACAGTACCACCAC
CCAGGCACAAGCGACGGGCTCCCAGTCCTCGGCGTCGAAGGCCAACGAAA
GCAATGCCAACCACTTGAACAATGGGACATCCGGTGGACGCAGACAGTCC
ACCATGCCAAATAGCGGAGGATCTAGCGTAGGAGGCGCTGTCCGCCAGCA
GCAGGGACGTACCCCATTCACCATGACGAAAAGACTTACGCGAACCGAGG
AACGGGGCTTTGGATTCTCTATTGTCTGGACGCATCCGCCACGGGTGGAG
AAAATCGAGGCGGGACTCTCGGCCGATCGGTGTGGCATTTTGCCCGGCGA
CTATGTGATCTTTGTGGACAAGCATAACGTCGTCACGATGCCCGAGGCTG
ATGTTCTGAATTTGATACGATCGCAGGGCTCGTCCTTGACGTTGGAGATA
TTCAGAAGGTCAGGCGCGGGCGCCACAACAATCACGTCGACGGACTTGGG
CCAGAACAATGTACACATAAGCACCAGATTGGGCGCGGCAGTGGGCTTGG
GCAGCGAGGAGCACACCCTGGCCACCACCGCAACAGGAACGACCACCGTA
ATGAGTCTGCAAAGGACCACCAGTACGAGGATCCAGCCATTGGCAAATAG
CATGAGCCGGCCGGCTACCGCATGCTCGGGAACCACCTCCTCCATCGAGG
CGGCCAAAAGGAGGCTTCACCTGCCACAGGTCACCTTCAGCAAGGAGGTA
GGCAAAGGTGTCTTCGTCTAAGGATTATTATTTTTTGCTTTGATTCATTT
CGTGTCTTTGTGTACATACTAATTTGTTAAGTTTAAGAGATTAAGTTATC
GCGCCATGCTGGTTATCATTACGACTACCTAATTATTTATCCTTTTTTTT
TGCCTAGCCTAGGCCTCTATTTTGTTTGAGAGTCCTTAAGCTTCGTGCGA
CTTCGCTACGCTTGACAATAAACTTTTTTTTTCGATCCCAAAAAAAAAAA
AAAAA

RE74757.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
PsGEF-RB 2886 PsGEF-RB 1..2840 3..2842 14200 100 Plus
PsGEF.a 5261 PsGEF.a 2..1410 3..1411 7045 100 Plus
PsGEF-RA 4861 PsGEF-RA 2..1410 3..1411 7045 100 Plus
PsGEF.a 5261 PsGEF.a 1516..2704 1409..2597 5945 100 Plus
PsGEF-RA 4861 PsGEF-RA 1516..2704 1409..2597 5945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2274453..2275880 2839..1412 7140 100 Minus
chrX 22417052 chrX 2278789..2279672 1134..251 4420 100 Minus
chrX 22417052 chrX 2278175..2278452 1411..1134 1390 100 Minus
chrX 22417052 chrX 2281349..2281598 253..3 1205 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2380514..2381944 2842..1412 7155 100 Minus
X 23542271 X 2384853..2385736 1134..251 4420 100 Minus
X 23542271 X 2384239..2384516 1411..1134 1390 100 Minus
X 23542271 X 2387413..2387663 253..3 1255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2388612..2390042 2842..1412 7155 100 Minus
X 23527363 X 2392951..2393834 1134..251 4420 100 Minus
X 23527363 X 2392337..2392614 1411..1134 1390 100 Minus
X 23527363 X 2395511..2395761 253..3 1255 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:40:30 has no hits.

RE74757.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:41:16 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2274453..2275880 1412..2839 100 <- Minus
chrX 2278175..2278451 1135..1411 100 <- Minus
chrX 2278789..2279669 254..1134 96 <- Minus
chrX 2281349..2281599 1..253 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:35 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
CG14045-RA 1..1155 261..1417 99 -> Plus
CG14045-RA 1266..2445 1418..2597 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:46:26 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 1..2361 261..2621 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:07:21 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 1..2361 261..2621 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:28:03 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
CG14045-RA 1..1155 261..1417 99 -> Plus
CG14045-RA 1266..2445 1418..2597 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:47 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 1..2361 261..2621 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:19:46 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
CG14045-RA 2..1414 3..1417 99 -> Plus
CG14045-RA 1525..2704 1418..2597 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:46:26 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 1..2837 3..2839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:21 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 2..2838 3..2839 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:28:03 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
CG14045-RA 2..1414 3..1417 99 -> Plus
CG14045-RA 1525..2704 1418..2597 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:47 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
PsGEF-RB 2..2838 3..2839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:16 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
X 2380517..2381944 1412..2839 100 <- Minus
X 2384239..2384515 1135..1411 100 <- Minus
X 2384853..2385733 254..1134 100 <- Minus
X 2387413..2387664 1..253 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:16 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
X 2380517..2381944 1412..2839 100 <- Minus
X 2384239..2384515 1135..1411 100 <- Minus
X 2384853..2385733 254..1134 100 <- Minus
X 2387413..2387664 1..253 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:16 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
X 2380517..2381944 1412..2839 100 <- Minus
X 2384239..2384515 1135..1411 100 <- Minus
X 2384853..2385733 254..1134 100 <- Minus
X 2387413..2387664 1..253 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:21 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2278272..2278548 1135..1411 100 <- Minus
arm_X 2274550..2275977 1412..2839 100 <- Minus
arm_X 2278886..2279766 254..1134 100 <- Minus
arm_X 2281446..2281697 1..253 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:06:50 Download gff for RE74757.complete
Subject Subject Range Query Range Percent Splice Strand
X 2388615..2390042 1412..2839 100 <- Minus
X 2392337..2392613 1135..1411 100 <- Minus
X 2392951..2393831 254..1134 100 <- Minus
X 2395511..2395762 1..253 99   Minus

RE74757.pep Sequence

Translation from 260 to 2620

> RE74757.pep
MPTMTRMHRHSSSSAVVEESRGRRRGVGVPGVGDANKENFGVHFMSSPFG
NASLIALQDLSNVHGKSPQRRSFSEGSGPRQATPQLAALRCLPRTTGGAV
ALEDSQLSSSRMGDTTLDRMLDAIIESARKEVRCTKTLPGAGATTSTTIL
ADNAEWSETSVHEMEVRTPTHLKRQRVVRRKNPHKTTTINQTQSHQAKKL
EPLQLVPSTKRCLSFSSSSASSDLDEDEQQVAKRSSLASPTTTPPSHCTT
TTSSISSSSSSNGGADMEASQRGSIDVSIAFDAKEQQLNVHVIRCRDLQR
SHGSGNGSINAYVKVALSGGAQPPGYGGHSSGGSMSSGYQRTAVHRHSGR
PYFDQRFNFQISSGEETAGQYLQLAVWHRDRHLKRSEFLGCSTFPLNELV
HPDSGVSAGSYKLHAQACPPPTSRHSQPKANAGQDQKQETEAAKDQDKQQ
DDSPAEMAAAVTVTPQKPVATGSGSGSNSAAMALNDEVISISIDSMGKED
PLLPQQPQQPMKLSKKALHQRDADENLFLRFLELDPPADGNANSTTTQAQ
ATGSQSSASKANESNANHLNNGTSGGRRQSTMPNSGGSSVGGAVRQQQGR
TPFTMTKRLTRTEERGFGFSIVWTHPPRVEKIEAGLSADRCGILPGDYVI
FVDKHNVVTMPEADVLNLIRSQGSSLTLEIFRRSGAGATTITSTDLGQNN
VHISTRLGAAVGLGSEEHTLATTATGTTTVMSLQRTTSTRIQPLANSMSR
PATACSGTTSSIEAAKRRLHLPQVTFSKEVGKGVFV*

RE74757.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21954-PA 1600 GF21954-PA 1..871 1..779 2181 62.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12617-PA 1526 GG12617-PA 1..812 1..779 3370 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12812-PA 1744 GH12812-PA 68..971 1..779 1934 54.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
PsGEF-PB 786 CG43947-PB 1..786 1..786 4019 100 Plus
PsGEF-PI 1403 CG43947-PI 1..779 1..779 3984 100 Plus
PsGEF-PH 2006 CG43947-PH 1..779 1..779 3984 100 Plus
PsGEF-PG 2033 CG43947-PG 1..779 1..779 3984 100 Plus
PsGEF-PF 2738 CG43947-PF 1..779 1..779 3984 100 Plus
PsGEF-PC 1493 CG43947-PC 1..779 1..779 3984 100 Plus
PsGEF-PE 2777 CG43947-PE 1..815 1..779 3937 95.6 Plus
PsGEF-PA 1529 CG43947-PA 1..815 1..779 3937 95.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15915-PA 1617 GI15915-PA 1..886 1..779 2015 55.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26907-PA 1195 GL26907-PA 450..772 486..779 860 56.2 Plus
Dper\GL26907-PA 1195 GL26907-PA 1..147 1..131 461 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22665-PA 1612 GA22665-PA 1..867 1..779 1966 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18882-PA 1600 GM18882-PA 1..815 1..779 3547 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24610-PA 247 GD24610-PA 1..247 112..354 1223 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16822-PA 1584 GJ16822-PA 1..848 1..779 2014 56.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16211-PA 1544 GK16211-PA 20..837 1..779 2056 59.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16949-PA 1504 GE16949-PA 1..774 4..779 3251 89.1 Plus

RE74757.hyp Sequence

Translation from 260 to 2620

> RE74757.hyp
MPTMTRMHRHSSSSAVVEESRGRRRGVGVPGVGDANKENFGVHFMSSPFG
NASLIALQDLSNVHGKSPQRRSFSEGSGPRQATPQLAALRCLPRTTGGAV
ALEDSQLSSSRMGDTTLDRMLDAIIESARKEVRCTKTLPGAGATTSTTIL
ADNAEWSETSVHEMEVRTPTHLKRQRVVRRKNPHKTTTINQTQSHQAKKL
EPLQLVPSTKRCLSFSSSSASSDLDEDEQQVAKRSSLASPTTTPPSHCTT
TTSSISSSSSSNGGADMEASQRGSIDVSIAFDAKEQQLNVHVIRCRDLQR
SHGSGNGSINAYVKVALSGGAQPPGYGGHSSGGSMSSGYQRTAVHRHSGR
PYFDQRFNFQISSGEETAGQYLQLAVWHRDRHLKRSEFLGCSTFPLNELV
HPDSGVSAGSYKLHAQACPPPTSRHSQPKANAGQDQKQETEAAKDQDKQQ
DDSPAEMAAAVTVTPQKPVATGSGSGSNSAAMALNDEVISISIDSMGKED
PLLPQQPQQPMKLSKKALHQRDADENLFLRFLELDPPADGNANSTTTQAQ
ATGSQSSASKANESNANHLNNGTSGGRRQSTMPNSGGSSVGGAVRQQQGR
TPFTMTKRLTRTEERGFGFSIVWTHPPRVEKIEAGLSADRCGILPGDYVI
FVDKHNVVTMPEADVLNLIRSQGSSLTLEIFRRSGAGATTITSTDLGQNN
VHISTRLGAAVGLGSEEHTLATTATGTTTVMSLQRTTSTRIQPLANSMSR
PATACSGTTSSIEAAKRRLHLPQVTFSKEVGKGVFV*

RE74757.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
PsGEF-PB 786 CG43947-PB 1..786 1..786 4019 100 Plus
PsGEF-PI 1403 CG43947-PI 1..779 1..779 3984 100 Plus
PsGEF-PH 2006 CG43947-PH 1..779 1..779 3984 100 Plus
PsGEF-PG 2033 CG43947-PG 1..779 1..779 3984 100 Plus
PsGEF-PF 2738 CG43947-PF 1..779 1..779 3984 100 Plus