Clone RE74917 Report

Search the DGRC for RE74917

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:749
Well:17
Vector:pFlc-1
Associated Gene/Transcripttobi-RA
Protein status:RE74917.pep: gold
Preliminary Size:1988
Sequenced Size:2111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11909 2002-01-01 Sim4 clustering to Release 2
CG11909 2003-01-01 Sim4 clustering to Release 3
CG11909 2008-04-29 Release 5.5 accounting
CG11909 2008-08-15 Release 5.9 accounting
CG11909 2008-12-18 5.12 accounting

Clone Sequence Records

RE74917.complete Sequence

2111 bp (2111 high quality bases) assembled on 2005-10-24

GenBank Submission: BT023924

> RE74917.complete
AGTCGTGTTGTGAGAAAGGCACGAAAATGAGGTTTATTTTACTATCCCTG
CTGTTGGCATCCTTCTGCCTCTGGGAGGCGGTTCACACTTGTGCCAGCAT
CGAGCAGCGCTACAAGTTTCCCAATAGCAATGTCTACGTGCGACTTAGGA
GAGGTGATAAGTTGCAGTATGAGCTAATGAAGGGCGAGAAGTCCCTGCAG
ACGGTGACCTTCGACAACTTTGACAGCAGCGCCAATCTGGTGGAGACGAG
CAGTGGTAGCTACCAGCTTACCGATGGCCAATCCACCGTGGAGTTCACCC
TGGTCAAAAGCGGAGTGGTTGCCGGCACAGGCAGTGAGATAACCCATGTG
AAAGTATCCCGAGATCAGGTGCTGCAAGGCACCCAACCCAGGGATTGCGT
CCCCCTGAAGACCGGATCGACGCACTGGTTCAGTGGTCCGGAGCAGAAGC
AACACTACTGGCCAGTGGAGCGACAGAGGCATAGTAACTATTCCTACCTG
CCAAAGGAGCTGGATAACTTTGGTGTGGGTGAGCGATATTGGTTGAACGG
CGACGGAGTCTTTTTGTACGTGGAGAGCAACACTCCTCTGTTTATTGATC
AGAATAGTGCTGCCTATCCTGACCAGCTGTGTCTGAGTGCTATTAGTGCT
CTACCCTATGATCCTCGGGTGACCTCTGCCAAATTCGTTTACCACGTAGC
TGTGGCCAAGGATGCCAAGGCGGCGCACCGGTATGCCGTTAAAACGTTCC
TCGGCCAACCCACAGGCTATCCCGATGAGCGAATGGTCATGCATCCTGTG
TGGTCCACATGGGCTCTCTACAAGGCTGAGGTATCCGACGATGTGGTTCG
TGACTTCGCCAAGCAGATTCTGGATAATGGGTTCAACAACAGCCAGCTGG
AAATCGACGATGATTGGGAGGATTGCTATGGAGCCATGACCTTCAGGAAG
AACAAGTTCCCCGATAGCAAGACCCTGACTGATGACCTCAAGGCCTTGGG
TTTCCGTGTGACCCTGTGGATTCATCCATTCATTAACAACAACTGCACAG
CCATTTACGATGAAGCTAAGTCTAAGGGTTACCTGGTGCTCGATCACGAG
GGAAGCTCCGACACGCAATGGTGGAACAGCAAGCCCAAGGATGCAGCCAT
TTTGGACTTTACCAAAACTGAGGTTCAGGAGTGGTTCAGCAAGCGTTTAA
AGCGCCTTCAGGATGAGGATGGCATTGATAGCTTCAAGTTTGATGCCGGA
GAGACCAGTTGGCTACCCAGTGATCCTGTACTCCAGGCTAGCAGTTCCAT
GGTGACACCACTGCAGGCGGTGGGCGACTACGTGCGTACTGTAGCGGCAT
TCGGAGACATGGTGGAGGTTCGATCAGCCCAGAACACTCAAGATCAGCCA
ATCTTCGTGCGCATCGTGGACAAGGACTCCGAATGGGGATGGAACAACGG
CCTGCTCACACTGATCTCTTCGATGCTGCAAATGAACCTCAACGGTTATC
CTTTCGTCCTTCCCGATATGATTGGTGGTAATGGCTACTACGAAAAGCCA
CCAACCAAGGAGCTTTTCCTCCGTTGGCTGCAGGCCAACGTCTTTATGCC
CGCCCTGCAGTTCTCCTTCGTTCCCTGGAACTTTGACGACGAGGCCATTG
CGATCAGCAAGAACTTCACCGCCCTCCATGCCACCTATACACCTTACATT
ATGAAGCTCTTTAAGCGCGCTGTGGATTCTGGTGAACCTGTGAATGTTCC
CCTCTGGTGGATCGCCCCGACTGATGAGGTGGCGCAGTCTATCTATGATG
AGTTCCTTTTGGGCGAAGACATCATCGCTGCTCCCGTTGTGGTCGAGGGC
GCCACCAAGCGAGACATTTACCTGCCAGAGGGCGAGTGGCAGGATGGAAA
CAGCGACCAGGTGTACACTGGACCCACCTGGGTGATGGACTACGCCGCTC
CCTTGGATACCCTACCCTACTTTTTGCGCGTGGGATTCACACTGGAGTAG
AGCGGAAACCGTTTTATATATCTAAACTTCCTAGCGTGTATATTTAAAAA
AAAAACAGAAGACGAACAAACTTAATAAAGTTAAATAATTATAACAAAAA
AAAAAAAAAAA

RE74917.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11909-RA 2365 CG11909-RA 271..2365 1..2095 10475 100 Plus
CG11909.a 2459 CG11909.a 365..2459 1..2095 10475 100 Plus
CG11909.b 2365 CG11909.b 271..2365 1..2095 10475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21168217..21170016 1800..1 8985 99.9 Minus
chr3R 27901430 chr3R 21167865..21168160 2095..1800 1480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25345113..25346912 1800..1 9000 100 Minus
3R 32079331 3R 25344759..25345056 2097..1800 1490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25085944..25087743 1800..1 9000 100 Minus
3R 31820162 3R 25085590..25085887 2097..1800 1490 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:16:39 has no hits.

RE74917.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:17:42 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21167865..21168159 1801..2095 100 <- Minus
chr3R 21168217..21170016 1..1800 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:45 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11909-RA 1..1974 27..2000 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:47:23 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 1..1974 27..2000 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:07:21 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 1..1974 27..2000 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:28:54 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11909-RA 1..1974 27..2000 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:38:53 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 1..1974 27..2000 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:20:39 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11909-RA 1..2000 1..2000 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:47:23 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 1..2095 1..2095 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:21 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 10..2104 1..2095 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:28:57 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11909-RA 1..2000 1..2000 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:53 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
tobi-RA 10..2104 1..2095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:42 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25344761..25345055 1801..2095 100 <- Minus
3R 25345113..25346912 1..1800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:42 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25344761..25345055 1801..2095 100 <- Minus
3R 25345113..25346912 1..1800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:42 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25344761..25345055 1801..2095 100 <- Minus
3R 25345113..25346912 1..1800 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:21 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21170483..21170777 1801..2095 100 <- Minus
arm_3R 21170835..21172634 1..1800 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:07:23 Download gff for RE74917.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25085592..25085886 1801..2095 100 <- Minus
3R 25085944..25087743 1..1800 100   Minus

RE74917.hyp Sequence

Translation from 2 to 1999

> RE74917.hyp
SCCEKGTKMRFILLSLLLASFCLWEAVHTCASIEQRYKFPNSNVYVRLRR
GDKLQYELMKGEKSLQTVTFDNFDSSANLVETSSGSYQLTDGQSTVEFTL
VKSGVVAGTGSEITHVKVSRDQVLQGTQPRDCVPLKTGSTHWFSGPEQKQ
HYWPVERQRHSNYSYLPKELDNFGVGERYWLNGDGVFLYVESNTPLFIDQ
NSAAYPDQLCLSAISALPYDPRVTSAKFVYHVAVAKDAKAAHRYAVKTFL
GQPTGYPDERMVMHPVWSTWALYKAEVSDDVVRDFAKQILDNGFNNSQLE
IDDDWEDCYGAMTFRKNKFPDSKTLTDDLKALGFRVTLWIHPFINNNCTA
IYDEAKSKGYLVLDHEGSSDTQWWNSKPKDAAILDFTKTEVQEWFSKRLK
RLQDEDGIDSFKFDAGETSWLPSDPVLQASSSMVTPLQAVGDYVRTVAAF
GDMVEVRSAQNTQDQPIFVRIVDKDSEWGWNNGLLTLISSMLQMNLNGYP
FVLPDMIGGNGYYEKPPTKELFLRWLQANVFMPALQFSFVPWNFDDEAIA
ISKNFTALHATYTPYIMKLFKRAVDSGEPVNVPLWWIAPTDEVAQSIYDE
FLLGEDIIAAPVVVEGATKRDIYLPEGEWQDGNSDQVYTGPTWVMDYAAP
LDTLPYFLRVGFTLE*

RE74917.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
tobi-PA 657 CG11909-PA 1..657 9..665 3515 100 Plus
CG33080-PD 725 CG33080-PD 167..719 126..660 530 27 Plus
CG33080-PB 725 CG33080-PB 167..719 126..660 530 27 Plus
CG33080-PC 844 CG33080-PC 286..838 126..660 530 27 Plus
CG33080-PA 925 CG33080-PA 367..919 126..660 530 27 Plus

RE74917.pep Sequence

Translation from 26 to 1999

> RE74917.pep
MRFILLSLLLASFCLWEAVHTCASIEQRYKFPNSNVYVRLRRGDKLQYEL
MKGEKSLQTVTFDNFDSSANLVETSSGSYQLTDGQSTVEFTLVKSGVVAG
TGSEITHVKVSRDQVLQGTQPRDCVPLKTGSTHWFSGPEQKQHYWPVERQ
RHSNYSYLPKELDNFGVGERYWLNGDGVFLYVESNTPLFIDQNSAAYPDQ
LCLSAISALPYDPRVTSAKFVYHVAVAKDAKAAHRYAVKTFLGQPTGYPD
ERMVMHPVWSTWALYKAEVSDDVVRDFAKQILDNGFNNSQLEIDDDWEDC
YGAMTFRKNKFPDSKTLTDDLKALGFRVTLWIHPFINNNCTAIYDEAKSK
GYLVLDHEGSSDTQWWNSKPKDAAILDFTKTEVQEWFSKRLKRLQDEDGI
DSFKFDAGETSWLPSDPVLQASSSMVTPLQAVGDYVRTVAAFGDMVEVRS
AQNTQDQPIFVRIVDKDSEWGWNNGLLTLISSMLQMNLNGYPFVLPDMIG
GNGYYEKPPTKELFLRWLQANVFMPALQFSFVPWNFDDEAIAISKNFTAL
HATYTPYIMKLFKRAVDSGEPVNVPLWWIAPTDEVAQSIYDEFLLGEDII
AAPVVVEGATKRDIYLPEGEWQDGNSDQVYTGPTWVMDYAAPLDTLPYFL
RVGFTLE*

RE74917.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18086-PA 659 GF18086-PA 1..659 1..657 3207 88.6 Plus
Dana\GF21469-PA 945 GF21469-PA 387..939 118..652 530 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12250-PA 657 GG12250-PA 1..657 1..657 3446 97 Plus
Dere\GG18476-PA 935 GG18476-PA 377..929 118..652 540 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19352-PA 651 GH19352-PA 1..651 1..657 2667 73.1 Plus
Dgri\GH11967-PA 955 GH11967-PA 313..949 57..652 543 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
tobi-PA 657 CG11909-PA 1..657 1..657 3515 100 Plus
CG33080-PD 725 CG33080-PD 167..719 118..652 530 27 Plus
CG33080-PB 725 CG33080-PB 167..719 118..652 530 27 Plus
CG33080-PC 844 CG33080-PC 286..838 118..652 530 27 Plus
CG33080-PA 925 CG33080-PA 367..919 118..652 530 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22561-PA 652 GI22561-PA 20..652 18..657 2628 75.2 Plus
Dmoj\GI14708-PA 943 GI14708-PA 276..937 1..652 522 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12508-PA 658 GL12508-PA 5..657 4..656 2971 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11275-PA 658 GA11275-PA 5..657 4..656 2973 83.8 Plus
Dpse\GA17264-PA 955 GA17264-PA 397..949 118..652 534 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17717-PA 371 GM17717-PA 59..371 341..657 1416 85.8 Plus
Dsec\GM12624-PA 922 GM12624-PA 364..916 118..652 532 27.1 Plus
Dsec\GM17717-PA 371 GM17717-PA 1..127 1..135 414 71.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18201-PA 657 GD18201-PA 1..657 1..657 3495 98.9 Plus
Dsim\GD16241-PA 809 GD16241-PA 167..584 118..519 324 26.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23750-PA 653 GJ23750-PA 9..653 7..657 2735 75.6 Plus
Dvir\GJ16771-PA 928 GJ16771-PA 370..922 118..652 518 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14321-PA 661 GK14321-PA 7..661 5..657 2722 74.4 Plus
Dwil\GK13813-PA 669 GK13813-PA 12..665 8..657 2446 67.3 Plus
Dwil\GK10238-PA 939 GK10238-PA 381..933 118..652 549 27.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10701-PA 657 GE10701-PA 1..657 1..657 3291 95.7 Plus
Dyak\GE16794-PA 932 GE16794-PA 374..926 118..652 535 27.3 Plus