BDGP Sequence Production Resources |
Search the DGRC for RE75078
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 750 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5928-RC |
Protein status: | RE75078.pep: gold |
Sequenced Size: | 1192 |
Gene | Date | Evidence |
---|---|---|
CG5928-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
1192 bp assembled on 2010-12-02
GenBank Submission: BT125798.1
> RE75078.complete AGTTGAATTTTGGACTCGAGAGACTTCGGATCGAAGCTCAACCTGGGATT TGGATTTGGAAGTTTTCACCTTGTTATAAAACCACATAGTTGGGCCCTTT CCCCCTTCTCCGCACATACTAACGAAAATGCTGCAACTTCAAAAGATGAA TACTCTGCTGCTGCTCTTGGCCATGATGCGCTGCATCTGTGCCACGCCCA TAGCTCCTGCCACGCCCGATGGCGCCACGCCCATCGACGCCCGCGTCTCG GCCGCCGACTTCGGAGCCCAGGATGCTTTCGATGCCGCCGACAGCTCCGC GGAATCCACCCACGCGCAGGCCAGCGACGCCGGGTTCAAGATCTCTCTCC TGCCCACTCCGGCTAAAACGGCGGAATCGGTGAATCTAGAGCAGGAGGCC ATTCCCTCGAAGGTGCTGAGCGTGTACGACAACAGTCAAAAGAGGCTGGC CGATTTGGCGCAGCCCGTTCCCATTTTGGACTCCATCAGTGAGCACGAGA AGTACGGCAACAACGGTGACATGTTCGACGGCATCTCGCGATCCATTGTC AACGGCTACGAGGCCTTTTCCAACCTGCTCAACACCTTTATTCAGGTGAG GGAGTGCCGAAATTGCGACCATTGTGTTTGGTTTGTTTGTTTGCCCTGTT TCTTGGTCAATCCATTCGCACACACGTTGCATAATGGTCCCAGCGATGCA CCGGCTCAGCAGCCAAACAAAATTTAAACAATACTTTAAACATGCGTACG AAAGAGCCTATCAACTTACGGCCTTAGCTGTCAGTATTACTGCAAGTCCT TGAGTCTTGGCTATTTTCAAGCCAGATTGACAGTACCACGACCCGCTGGC ACTGCTTATGCAATTAGTCGCTCGTCGTGTGCGCTTGCGCTTCGCTTTGA GCAAGGTCAGTTCCAGTGCCAGCTTTCCCTCTCTTGACCACTCTCTTCCC CCCATTTCTCTCTTGCAGAAGCCCAAAGAGTTGGCGCGCAGCGTGACGAA GGGGATCACGGCTCAATTGGATATCATAGGAGGCAAATTGGTGGGCCTTT GAGAAGGCGTGTAATTTAAATAAATACTTTAATTTATTTTGTAACTTAAC ACGAACATGTTGTTTAGGAATGCATTTCGATATAAATATTTGTATGTATG AATAAAATAATCATACGCATAGTAGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5960788..5961502 | 461..1176 | 3485 | 99.4 | Plus |
chrX | 22417052 | chrX | 5960203..5960542 | 1..340 | 1700 | 100 | Plus |
chrX | 22417052 | chrX | 5960598..5960722 | 339..463 | 595 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6507..6603 | 1173..1083 | 111 | 65 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5960203..5960542 | 1..340 | 100 | -> | Plus |
chrX | 5960600..5960722 | 341..463 | 98 | -> | Plus |
chrX | 5960791..5961502 | 464..1176 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 1..468 | 128..595 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 1..468 | 128..595 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RC | 1..600 | 128..727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RC | 1..600 | 128..727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 5..599 | 1..595 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 5..599 | 1..595 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RC | 1..1176 | 1..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RC | 7..1182 | 1..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6067964..6068303 | 1..340 | 100 | -> | Plus |
X | 6068361..6068483 | 341..463 | 100 | -> | Plus |
X | 6068552..6069264 | 464..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6067964..6068303 | 1..340 | 100 | -> | Plus |
X | 6068361..6068483 | 341..463 | 100 | -> | Plus |
X | 6068552..6069264 | 464..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6067964..6068303 | 1..340 | 100 | -> | Plus |
X | 6068361..6068483 | 341..463 | 100 | -> | Plus |
X | 6068552..6069264 | 464..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5961997..5962336 | 1..340 | 100 | -> | Plus |
arm_X | 5962394..5962516 | 341..463 | 100 | -> | Plus |
arm_X | 5962585..5963297 | 464..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6076062..6076401 | 1..340 | 100 | -> | Plus |
X | 6076459..6076581 | 341..463 | 100 | -> | Plus |
X | 6076650..6077362 | 464..1176 | 100 | Plus |
Translation from 127 to 726
> RE75078.pep MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA FDAADSSAESTHAQASDAGFKISLLPTPAKTAESVNLEQEAIPSKVLSVY DNSQKRLADLAQPVPILDSISEHEKYGNNGDMFDGISRSIVNGYEAFSNL LNTFIQVRECRNCDHCVWFVCLPCFLVNPFAHTLHNGPSDAPAQQPNKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20369-PA | 184 | GF20369-PA | 1..157 | 1..156 | 653 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19571-PA | 183 | GG19571-PA | 1..156 | 1..156 | 754 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24849-PA | 186 | GH24849-PA | 17..159 | 15..156 | 558 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5928-PC | 199 | CG5928-PC | 1..199 | 1..199 | 1040 | 100 | Plus |
CG5928-PA | 183 | CG5928-PA | 1..156 | 1..156 | 782 | 100 | Plus |
CG5928-PB | 78 | CG5928-PB | 1..73 | 1..73 | 363 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16185-PA | 319 | GI16185-PA | 19..150 | 24..156 | 507 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14908-PA | 186 | GL14908-PA | 24..159 | 19..156 | 532 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19236-PA | 186 | GA19236-PA | 24..159 | 19..156 | 531 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12464-PA | 183 | GM12464-PA | 1..156 | 1..156 | 769 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16782-PA | 183 | GD16782-PA | 1..156 | 1..156 | 767 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16674-PA | 181 | GJ16674-PA | 21..154 | 22..156 | 508 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15823-PA | 192 | GK15823-PA | 15..165 | 10..156 | 561 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16731-PA | 186 | GE16731-PA | 1..159 | 1..156 | 691 | 89.3 | Plus |
Translation from 127 to 726
> RE75078.hyp MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA FDAADSSAESTHAQASDAGFKISLLPTPAKTAESVNLEQEAIPSKVLSVY DNSQKRLADLAQPVPILDSISEHEKYGNNGDMFDGISRSIVNGYEAFSNL LNTFIQVRECRNCDHCVWFVCLPCFLVNPFAHTLHNGPSDAPAQQPNKI*