Clone RE75078 Report

Search the DGRC for RE75078

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:750
Well:78
Vector:pFlc-1
Associated Gene/TranscriptCG5928-RC
Protein status:RE75078.pep: gold
Sequenced Size:1192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5928-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RE75078.complete Sequence

1192 bp assembled on 2010-12-02

GenBank Submission: BT125798.1

> RE75078.complete
AGTTGAATTTTGGACTCGAGAGACTTCGGATCGAAGCTCAACCTGGGATT
TGGATTTGGAAGTTTTCACCTTGTTATAAAACCACATAGTTGGGCCCTTT
CCCCCTTCTCCGCACATACTAACGAAAATGCTGCAACTTCAAAAGATGAA
TACTCTGCTGCTGCTCTTGGCCATGATGCGCTGCATCTGTGCCACGCCCA
TAGCTCCTGCCACGCCCGATGGCGCCACGCCCATCGACGCCCGCGTCTCG
GCCGCCGACTTCGGAGCCCAGGATGCTTTCGATGCCGCCGACAGCTCCGC
GGAATCCACCCACGCGCAGGCCAGCGACGCCGGGTTCAAGATCTCTCTCC
TGCCCACTCCGGCTAAAACGGCGGAATCGGTGAATCTAGAGCAGGAGGCC
ATTCCCTCGAAGGTGCTGAGCGTGTACGACAACAGTCAAAAGAGGCTGGC
CGATTTGGCGCAGCCCGTTCCCATTTTGGACTCCATCAGTGAGCACGAGA
AGTACGGCAACAACGGTGACATGTTCGACGGCATCTCGCGATCCATTGTC
AACGGCTACGAGGCCTTTTCCAACCTGCTCAACACCTTTATTCAGGTGAG
GGAGTGCCGAAATTGCGACCATTGTGTTTGGTTTGTTTGTTTGCCCTGTT
TCTTGGTCAATCCATTCGCACACACGTTGCATAATGGTCCCAGCGATGCA
CCGGCTCAGCAGCCAAACAAAATTTAAACAATACTTTAAACATGCGTACG
AAAGAGCCTATCAACTTACGGCCTTAGCTGTCAGTATTACTGCAAGTCCT
TGAGTCTTGGCTATTTTCAAGCCAGATTGACAGTACCACGACCCGCTGGC
ACTGCTTATGCAATTAGTCGCTCGTCGTGTGCGCTTGCGCTTCGCTTTGA
GCAAGGTCAGTTCCAGTGCCAGCTTTCCCTCTCTTGACCACTCTCTTCCC
CCCATTTCTCTCTTGCAGAAGCCCAAAGAGTTGGCGCGCAGCGTGACGAA
GGGGATCACGGCTCAATTGGATATCATAGGAGGCAAATTGGTGGGCCTTT
GAGAAGGCGTGTAATTTAAATAAATACTTTAATTTATTTTGTAACTTAAC
ACGAACATGTTGTTTAGGAATGCATTTCGATATAAATATTTGTATGTATG
AATAAAATAATCATACGCATAGTAGTAAAAAAAAAAAAAAAA

RE75078.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5960788..5961502 461..1176 3485 99.4 Plus
chrX 22417052 chrX 5960203..5960542 1..340 1700 100 Plus
chrX 22417052 chrX 5960598..5960722 339..463 595 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6068549..6069266 461..1178 3590 100 Plus
X 23542271 X 6067964..6068303 1..340 1700 100 Plus
X 23542271 X 6068359..6068483 339..463 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6076647..6077364 461..1178 3590 100 Plus
X 23527363 X 6076062..6076401 1..340 1700 100 Plus
X 23527363 X 6076457..6076581 339..463 625 100 Plus
Blast to na_te.dros performed 2019-03-17 01:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6507..6603 1173..1083 111 65 Minus

RE75078.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:13:33 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5960203..5960542 1..340 100 -> Plus
chrX 5960600..5960722 341..463 98 -> Plus
chrX 5960791..5961502 464..1176 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-12-03 14:28:57 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RA 1..468 128..595 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:42:23 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RA 1..468 128..595 100 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:32:42 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RC 1..600 128..727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:52:12 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RC 1..600 128..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-03 14:28:57 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RA 5..599 1..595 100 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:42:23 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RA 5..599 1..595 100 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:32:42 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RC 1..1176 1..1176 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:52:12 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
CG5928-RC 7..1182 1..1176 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:33 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
X 6067964..6068303 1..340 100 -> Plus
X 6068361..6068483 341..463 100 -> Plus
X 6068552..6069264 464..1176 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:33 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
X 6067964..6068303 1..340 100 -> Plus
X 6068361..6068483 341..463 100 -> Plus
X 6068552..6069264 464..1176 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:33 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
X 6067964..6068303 1..340 100 -> Plus
X 6068361..6068483 341..463 100 -> Plus
X 6068552..6069264 464..1176 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:32:42 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5961997..5962336 1..340 100 -> Plus
arm_X 5962394..5962516 341..463 100 -> Plus
arm_X 5962585..5963297 464..1176 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:45:56 Download gff for RE75078.complete
Subject Subject Range Query Range Percent Splice Strand
X 6076062..6076401 1..340 100 -> Plus
X 6076459..6076581 341..463 100 -> Plus
X 6076650..6077362 464..1176 100   Plus

RE75078.pep Sequence

Translation from 127 to 726

> RE75078.pep
MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA
FDAADSSAESTHAQASDAGFKISLLPTPAKTAESVNLEQEAIPSKVLSVY
DNSQKRLADLAQPVPILDSISEHEKYGNNGDMFDGISRSIVNGYEAFSNL
LNTFIQVRECRNCDHCVWFVCLPCFLVNPFAHTLHNGPSDAPAQQPNKI*

RE75078.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20369-PA 184 GF20369-PA 1..157 1..156 653 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19571-PA 183 GG19571-PA 1..156 1..156 754 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24849-PA 186 GH24849-PA 17..159 15..156 558 75 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5928-PC 199 CG5928-PC 1..199 1..199 1040 100 Plus
CG5928-PA 183 CG5928-PA 1..156 1..156 782 100 Plus
CG5928-PB 78 CG5928-PB 1..73 1..73 363 98.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16185-PA 319 GI16185-PA 19..150 24..156 507 76.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14908-PA 186 GL14908-PA 24..159 19..156 532 74.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19236-PA 186 GA19236-PA 24..159 19..156 531 74.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12464-PA 183 GM12464-PA 1..156 1..156 769 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16782-PA 183 GD16782-PA 1..156 1..156 767 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16674-PA 181 GJ16674-PA 21..154 22..156 508 77.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15823-PA 192 GK15823-PA 15..165 10..156 561 74.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16731-PA 186 GE16731-PA 1..159 1..156 691 89.3 Plus

RE75078.hyp Sequence

Translation from 127 to 726

> RE75078.hyp
MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA
FDAADSSAESTHAQASDAGFKISLLPTPAKTAESVNLEQEAIPSKVLSVY
DNSQKRLADLAQPVPILDSISEHEKYGNNGDMFDGISRSIVNGYEAFSNL
LNTFIQVRECRNCDHCVWFVCLPCFLVNPFAHTLHNGPSDAPAQQPNKI*

RE75078.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5928-PC 199 CG5928-PC 1..199 1..199 1040 100 Plus
CG5928-PA 183 CG5928-PA 1..156 1..156 782 100 Plus
CG5928-PB 78 CG5928-PB 1..73 1..73 363 98.6 Plus