Clone RE75113 Report

Search the DGRC for RE75113

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:751
Well:13
Vector:pFlc-1
Associated Gene/TranscriptCG3353-RA
Protein status:RE75113.pep: gold
Sequenced Size:1328

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3353 2002-01-01 Sim4 clustering to Release 2
CG3353 2003-01-01 Sim4 clustering to Release 3
CG3353 2003-08-11 Blastp of sequenced clone
CG3353 2008-04-29 Release 5.5 accounting
CG3353 2008-08-15 Release 5.9 accounting
CG3353 2008-12-18 5.12 accounting

Clone Sequence Records

RE75113.complete Sequence

1328 bp (1328 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010224

> RE75113.complete
AATTGGATTGGCAAAAACAAAGCCAAAAAGCCGAGTAAACAATGAATAAT
TTTGAAATTCGGGAGTTGCCCGGCAAGGGACGTGCGATGATCGCGACCAA
AAATTTCGCGAAGGACGAGGTGATCTTCGAGGAGGAACCGTTCGTGTCCC
GGCAGTTCTCGTGGAACGTGGCCTACGGCTATGCGGCGTGTGACCACTGC
ATGCGGCCACTGGAGACGGTGTTAGAGAATGTGCGCCGCCTGGCCAGTGA
TCCCAAAGTGGAGGTGCCGCTGCTTCAACACGATCCCACCGCCCAGTGGG
TGGCCCAGTTCACCCAGTGCCCACGGTGCAAGGTGCGCTACTGCTCCGAG
GACTGCCTAATGGAGGCGCAGAAGCGCTACCACCGCGTGGCTTGCATGGG
CGCCTTCCACTCCGACGACACACATCCCATCAATGTACTGAATGAGACTT
GGAAAAAGATGCACTATCCGCCCGAGACGGGTAGCATAATGCTGATTGTC
CGCCTGATGGCTCTTTACCAGCAGAGCACCAAGAAGGAGGAGTTCCTCGA
GCAATTGCAGTCCTTCCAGTCGCTGATTGTGAATCGCGAGCAGAAGATCT
ATCACAAAATGCTGGGCGAGAACTTTGAGCAGCAGATGGAGCAGTTGTAT
CTTGCGTTCTGCAATGCTTTCACGGGCGAGGAGTTCTCCATATTCAAAAC
ACCGGATGCTTTCAAGACATTGATGGCCATTCTGGGAACTAACAGCCAGG
GAATTGCAACAAGCGTGCTTTCCCAGTGGGTTGCCAAGGTGTCCGATCTA
CCACTAACGGATTCGGAAAAGGAACAGCTCGACACGGTCATCGACGGACT
GTACGCCAAAGTCGGAGAATTTGCTGGCGAATTCTTGAATAACGAGGGCT
CTGGACTATACCTGCTGCAGAGCAAAATCAACCACAGTTGCGTGCCGAAT
GCCTGCTCCACATTTCCCTATTCCAACGACATTGTCGTGCTCAAGGCCTT
GGCTCCCATTCAACAGGGCGAAGAGATCTGCATCTCCTACCTGGACGAAT
GCATGCTGGAGCGTAGTCGCCACTCGAGGCACAAGGTCTTGCGCGAGAAC
TACGTGTTCATCTGCCAGTGCCCCAAGTGCCGCGCCCAGGCGTCCGATCC
CGACGAGACCAGCGAAGATGACGATGACGACGACGAAATGGACGACTACG
ACGATGATGACGACATGAACTAAACTAAGAATTAATTTTTTATTTCATTA
AAAAGCTCTTATGTACGTACATATTGTAAAATATATTTATGTTAAAGATT
TTGAAGAAGTGTACAAAAAAAAAAAAAA

RE75113.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353.a 1886 CG3353.a 78..1393 1..1316 6580 100 Plus
CG3353-RA 1524 CG3353-RA 78..1393 1..1316 6580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17041817..17042433 692..76 3085 100 Minus
chr3R 27901430 chr3R 17041079..17041524 1314..871 2090 98.4 Minus
chr3R 27901430 chr3R 17041584..17041761 870..693 890 100 Minus
chr3R 27901430 chr3R 17042485..17042562 78..1 375 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21218004..21218620 692..76 3085 100 Minus
3R 32079331 3R 21217266..21217711 1316..871 2230 100 Minus
3R 32079331 3R 21217771..21217948 870..693 890 100 Minus
3R 32079331 3R 21218672..21218749 78..1 390 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20958835..20959451 692..76 3085 100 Minus
3R 31820162 3R 20958097..20958542 1316..871 2230 100 Minus
3R 31820162 3R 20958602..20958779 870..693 890 100 Minus
3R 31820162 3R 20959503..20959580 78..1 390 100 Minus
Blast to na_te.dros performed 2019-03-16 21:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 4215..4256 1308..1268 113 76.2 Minus

RE75113.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:27:19 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17041079..17041180 1215..1314 96 == Minus
chr3R 17041233..17041524 871..1162 98 <- Minus
chr3R 17041584..17041761 693..870 100 <- Minus
chr3R 17041817..17042431 78..692 100 <- Minus
chr3R 17042486..17042562 1..77 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:53 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 1..1182 42..1223 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:51:14 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 1..1182 42..1223 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:07 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 1..1182 42..1223 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:31 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 1..1182 42..1223 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:31 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 1..1182 42..1223 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:14:54 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 41..1354 1..1314 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:51:13 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 41..1354 1..1314 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:07 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 43..1356 1..1314 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:31 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 41..1354 1..1314 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:31 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 43..1356 1..1314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:19 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21217268..21217711 871..1314 100 <- Minus
3R 21217771..21217948 693..870 100 <- Minus
3R 21218004..21218618 78..692 100 <- Minus
3R 21218673..21218749 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:19 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21217268..21217711 871..1314 100 <- Minus
3R 21217771..21217948 693..870 100 <- Minus
3R 21218004..21218618 78..692 100 <- Minus
3R 21218673..21218749 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:19 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21217268..21217711 871..1314 100 <- Minus
3R 21217771..21217948 693..870 100 <- Minus
3R 21218004..21218618 78..692 100 <- Minus
3R 21218673..21218749 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:07 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17043493..17043670 693..870 100 <- Minus
arm_3R 17042990..17043433 871..1314 100 <- Minus
arm_3R 17043726..17044340 78..692 100 <- Minus
arm_3R 17044395..17044471 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:35 Download gff for RE75113.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20958099..20958542 871..1314 100 <- Minus
3R 20958602..20958779 693..870 100 <- Minus
3R 20958835..20959449 78..692 100 <- Minus
3R 20959504..20959580 1..77 100   Minus

RE75113.pep Sequence

Translation from 41 to 1222

> RE75113.pep
MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC
DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY
CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM
LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME
QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV
SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC
VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL
RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*

RE75113.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23162-PA 392 GF23162-PA 1..368 1..368 1830 89.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14794-PA 392 GG14794-PA 1..368 1..368 1926 95.7 Plus
Dere\GG14805-PA 351 GG14805-PA 212..349 202..373 199 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18189-PA 393 GH18189-PA 1..374 1..374 1783 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd5-PA 393 CG3353-PA 1..393 1..393 2097 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10143-PA 392 GI10143-PA 1..374 1..374 1778 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12277-PA 188 GL12277-PA 13..169 218..374 742 86.6 Plus
Dper\GL12278-PA 291 GL12278-PA 205..289 194..276 162 40 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17400-PA 392 GA17400-PA 1..374 1..374 1814 86.6 Plus
Dpse\GA26252-PB 291 GA26252-PB 205..289 194..276 171 41.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15092-PA 392 GM15092-PA 1..392 1..393 2102 98.5 Plus
Dsec\GM15094-PA 353 GM15094-PA 213..353 202..374 202 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19999-PA 391 GD19999-PA 1..391 1..393 2098 98.5 Plus
Dsim\GD20000-PA 352 GD20000-PA 212..352 202..374 211 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23360-PA 393 GJ23360-PA 1..374 1..374 1787 85.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12748-PA 394 GK12748-PA 1..374 1..374 1839 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25007-PA 393 GE25007-PA 1..370 1..370 1958 96.5 Plus
Dyak\GE25008-PA 351 GE25008-PA 212..349 202..373 174 27.3 Plus

RE75113.hyp Sequence

Translation from 41 to 1222

> RE75113.hyp
MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC
DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY
CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM
LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME
QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV
SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC
VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL
RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*

RE75113.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-PA 393 CG3353-PA 1..393 1..393 2097 100 Plus