BDGP Sequence Production Resources |
Search the DGRC for RE75113
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 751 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3353-RA |
Protein status: | RE75113.pep: gold |
Sequenced Size: | 1328 |
Gene | Date | Evidence |
---|---|---|
CG3353 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3353 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3353 | 2003-08-11 | Blastp of sequenced clone |
CG3353 | 2008-04-29 | Release 5.5 accounting |
CG3353 | 2008-08-15 | Release 5.9 accounting |
CG3353 | 2008-12-18 | 5.12 accounting |
1328 bp (1328 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010224
> RE75113.complete AATTGGATTGGCAAAAACAAAGCCAAAAAGCCGAGTAAACAATGAATAAT TTTGAAATTCGGGAGTTGCCCGGCAAGGGACGTGCGATGATCGCGACCAA AAATTTCGCGAAGGACGAGGTGATCTTCGAGGAGGAACCGTTCGTGTCCC GGCAGTTCTCGTGGAACGTGGCCTACGGCTATGCGGCGTGTGACCACTGC ATGCGGCCACTGGAGACGGTGTTAGAGAATGTGCGCCGCCTGGCCAGTGA TCCCAAAGTGGAGGTGCCGCTGCTTCAACACGATCCCACCGCCCAGTGGG TGGCCCAGTTCACCCAGTGCCCACGGTGCAAGGTGCGCTACTGCTCCGAG GACTGCCTAATGGAGGCGCAGAAGCGCTACCACCGCGTGGCTTGCATGGG CGCCTTCCACTCCGACGACACACATCCCATCAATGTACTGAATGAGACTT GGAAAAAGATGCACTATCCGCCCGAGACGGGTAGCATAATGCTGATTGTC CGCCTGATGGCTCTTTACCAGCAGAGCACCAAGAAGGAGGAGTTCCTCGA GCAATTGCAGTCCTTCCAGTCGCTGATTGTGAATCGCGAGCAGAAGATCT ATCACAAAATGCTGGGCGAGAACTTTGAGCAGCAGATGGAGCAGTTGTAT CTTGCGTTCTGCAATGCTTTCACGGGCGAGGAGTTCTCCATATTCAAAAC ACCGGATGCTTTCAAGACATTGATGGCCATTCTGGGAACTAACAGCCAGG GAATTGCAACAAGCGTGCTTTCCCAGTGGGTTGCCAAGGTGTCCGATCTA CCACTAACGGATTCGGAAAAGGAACAGCTCGACACGGTCATCGACGGACT GTACGCCAAAGTCGGAGAATTTGCTGGCGAATTCTTGAATAACGAGGGCT CTGGACTATACCTGCTGCAGAGCAAAATCAACCACAGTTGCGTGCCGAAT GCCTGCTCCACATTTCCCTATTCCAACGACATTGTCGTGCTCAAGGCCTT GGCTCCCATTCAACAGGGCGAAGAGATCTGCATCTCCTACCTGGACGAAT GCATGCTGGAGCGTAGTCGCCACTCGAGGCACAAGGTCTTGCGCGAGAAC TACGTGTTCATCTGCCAGTGCCCCAAGTGCCGCGCCCAGGCGTCCGATCC CGACGAGACCAGCGAAGATGACGATGACGACGACGAAATGGACGACTACG ACGATGATGACGACATGAACTAAACTAAGAATTAATTTTTTATTTCATTA AAAAGCTCTTATGTACGTACATATTGTAAAATATATTTATGTTAAAGATT TTGAAGAAGTGTACAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 17041817..17042433 | 692..76 | 3085 | 100 | Minus |
chr3R | 27901430 | chr3R | 17041079..17041524 | 1314..871 | 2090 | 98.4 | Minus |
chr3R | 27901430 | chr3R | 17041584..17041761 | 870..693 | 890 | 100 | Minus |
chr3R | 27901430 | chr3R | 17042485..17042562 | 78..1 | 375 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21218004..21218620 | 692..76 | 3085 | 100 | Minus |
3R | 32079331 | 3R | 21217266..21217711 | 1316..871 | 2230 | 100 | Minus |
3R | 32079331 | 3R | 21217771..21217948 | 870..693 | 890 | 100 | Minus |
3R | 32079331 | 3R | 21218672..21218749 | 78..1 | 390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20958835..20959451 | 692..76 | 3085 | 100 | Minus |
3R | 31820162 | 3R | 20958097..20958542 | 1316..871 | 2230 | 100 | Minus |
3R | 31820162 | 3R | 20958602..20958779 | 870..693 | 890 | 100 | Minus |
3R | 31820162 | 3R | 20959503..20959580 | 78..1 | 390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 4215..4256 | 1308..1268 | 113 | 76.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 17041079..17041180 | 1215..1314 | 96 | == | Minus |
chr3R | 17041233..17041524 | 871..1162 | 98 | <- | Minus |
chr3R | 17041584..17041761 | 693..870 | 100 | <- | Minus |
chr3R | 17041817..17042431 | 78..692 | 100 | <- | Minus |
chr3R | 17042486..17042562 | 1..77 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 1..1182 | 42..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 1..1182 | 42..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 1..1182 | 42..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 1..1182 | 42..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 1..1182 | 42..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 41..1354 | 1..1314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 41..1354 | 1..1314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 43..1356 | 1..1314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 41..1354 | 1..1314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3353-RA | 43..1356 | 1..1314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21217268..21217711 | 871..1314 | 100 | <- | Minus |
3R | 21217771..21217948 | 693..870 | 100 | <- | Minus |
3R | 21218004..21218618 | 78..692 | 100 | <- | Minus |
3R | 21218673..21218749 | 1..77 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21217268..21217711 | 871..1314 | 100 | <- | Minus |
3R | 21217771..21217948 | 693..870 | 100 | <- | Minus |
3R | 21218004..21218618 | 78..692 | 100 | <- | Minus |
3R | 21218673..21218749 | 1..77 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21217268..21217711 | 871..1314 | 100 | <- | Minus |
3R | 21217771..21217948 | 693..870 | 100 | <- | Minus |
3R | 21218004..21218618 | 78..692 | 100 | <- | Minus |
3R | 21218673..21218749 | 1..77 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 17043493..17043670 | 693..870 | 100 | <- | Minus |
arm_3R | 17042990..17043433 | 871..1314 | 100 | <- | Minus |
arm_3R | 17043726..17044340 | 78..692 | 100 | <- | Minus |
arm_3R | 17044395..17044471 | 1..77 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20958099..20958542 | 871..1314 | 100 | <- | Minus |
3R | 20958602..20958779 | 693..870 | 100 | <- | Minus |
3R | 20958835..20959449 | 78..692 | 100 | <- | Minus |
3R | 20959504..20959580 | 1..77 | 100 | Minus |
Translation from 41 to 1222
> RE75113.pep MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23162-PA | 392 | GF23162-PA | 1..368 | 1..368 | 1830 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14794-PA | 392 | GG14794-PA | 1..368 | 1..368 | 1926 | 95.7 | Plus |
Dere\GG14805-PA | 351 | GG14805-PA | 212..349 | 202..373 | 199 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18189-PA | 393 | GH18189-PA | 1..374 | 1..374 | 1783 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Smyd5-PA | 393 | CG3353-PA | 1..393 | 1..393 | 2097 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10143-PA | 392 | GI10143-PA | 1..374 | 1..374 | 1778 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12277-PA | 188 | GL12277-PA | 13..169 | 218..374 | 742 | 86.6 | Plus |
Dper\GL12278-PA | 291 | GL12278-PA | 205..289 | 194..276 | 162 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17400-PA | 392 | GA17400-PA | 1..374 | 1..374 | 1814 | 86.6 | Plus |
Dpse\GA26252-PB | 291 | GA26252-PB | 205..289 | 194..276 | 171 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15092-PA | 392 | GM15092-PA | 1..392 | 1..393 | 2102 | 98.5 | Plus |
Dsec\GM15094-PA | 353 | GM15094-PA | 213..353 | 202..374 | 202 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19999-PA | 391 | GD19999-PA | 1..391 | 1..393 | 2098 | 98.5 | Plus |
Dsim\GD20000-PA | 352 | GD20000-PA | 212..352 | 202..374 | 211 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23360-PA | 393 | GJ23360-PA | 1..374 | 1..374 | 1787 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12748-PA | 394 | GK12748-PA | 1..374 | 1..374 | 1839 | 88.8 | Plus |
Translation from 41 to 1222
> RE75113.hyp MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3353-PA | 393 | CG3353-PA | 1..393 | 1..393 | 2097 | 100 | Plus |