Clone RE75220 Report

Search the DGRC for RE75220

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:752
Well:20
Vector:pFlc-1
Associated Gene/TranscriptQtzl-RA
Protein status:RE75220.pep: gold
Sequenced Size:934

Clone Sequence Records

RE75220.complete Sequence

934 bp assembled on 2011-08-09

GenBank Submission: BT128791.1

> RE75220.complete
CACCCCACTGATTGTGAAATCCGTGATAACGAATTTTAACACCAGAATTT
CTAGGATTCCATCAGAATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCTGGTTCG
TACGCTTCGCCTTCAACGCCTGGCAAAAGATTCTGGCCTTGGGCAATCAA
CTGGGCACAACATTTGTCTGGGAATTGGACTGCAATGATCCCAATTTAAC
AAAGTGTAGCCAGCTGGTTCATCCCAAAAGCAACTCCACCATCCGACAGA
CTTCCTTCTCCAAAGACGGTTCCATTTTAGTTTGCGTGTGCGACGACAGC
ACCGTGTGGCGATGGGATCGCGTCAATTAGGATGAGTGTTTCTAGGCTAA
AAGAATTTTCCTTATCCTTCTAAATCCGATACCATATTTATGTAACCATA
GTTATTTTCAGTGTAATGTTTACCTTCAATATTAAGTATGTTCTTATGCG
TAGCATTTATATACAATACTCATTGTATTGACAATTTATGTTAAATTATG
TTAAATTTTTTAACATTAACCAAGATATTTATTCTATTCTATTACTTTTT
TAATGATCAAATAGCTTCGCAAATATTATCATCTTATGTTGTGTGAATGG
CGTGGGCTCTATCTTTAATGTTTATATTTTAACTAACTAACTTGTACACA
ATAAAAACTGTGAACACCAAAAAAAAAAAAAAAA

RE75220.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11994662..11995384 195..917 3615 100 Plus
chr2L 23010047 chr2L 11990888..11991464 341..917 2870 99.8 Plus
chr2L 23010047 chr2L 11994413..11994605 4..196 965 100 Plus
chr2L 23010047 chr2L 11998324..11998516 4..196 965 100 Plus
chr2L 23010047 chr2L 11998573..11998721 195..343 745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11996000..11996726 195..921 3620 99.9 Plus
2L 23513712 2L 11992235..11992815 341..921 2875 99.7 Plus
2L 23513712 2L 11995751..11995943 4..196 965 100 Plus
2L 23513712 2L 11999662..11999854 4..196 965 100 Plus
2L 23513712 2L 11999911..12000059 195..343 745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11996000..11996726 195..921 3620 99.8 Plus
2L 23513712 2L 11992235..11992815 341..921 2875 99.6 Plus
2L 23513712 2L 11995751..11995943 4..196 965 100 Plus
2L 23513712 2L 11999662..11999854 4..196 965 100 Plus
2L 23513712 2L 11999911..12000059 195..343 745 100 Plus
Blast to na_te.dros performed 2019-03-15 11:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 231..432 599..801 138 56 Plus

RE75220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:01:15 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11994409..11994605 1..196 98 -> Plus
chr2L 11994664..11995384 197..918 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-08-09 12:19:47 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31864-RA 1..372 67..438 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:50 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
Qtzl-RA 1..372 67..438 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:19:08 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
Qtzl-RA 1..372 67..438 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-09 12:19:46 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31864-RA 1..622 45..666 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:50 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
Qtzl-RC 8..925 1..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:08 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
Qtzl-RC 8..925 1..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:15 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11995747..11995943 1..196 98 -> Plus
2L 11996002..11996722 197..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:15 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11995747..11995943 1..196 98 -> Plus
2L 11996002..11996722 197..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:15 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11995747..11995943 1..196 98 -> Plus
2L 11996002..11996722 197..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:50 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11995747..11995943 1..196 98 -> Plus
arm_2L 11996002..11996722 197..918 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:33:22 Download gff for RE75220.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11996002..11996722 197..918 99   Plus
2L 11995747..11995943 1..196 98 -> Plus

RE75220.hyp Sequence

Translation from 66 to 437

> RE75220.hyp
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNLVRTLRLQ
RLAKDSGLGQSTGHNICLGIGLQ*

RE75220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Qtzl-PC 123 CG31864-PC 1..123 1..123 618 100 Plus
Qtzl-PA 123 CG31864-PA 1..123 1..123 618 100 Plus
CG12264-PA 462 CG12264-PA 1..92 1..92 462 100 Plus

RE75220.pep Sequence

Translation from 66 to 437

> RE75220.pep
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNLVRTLRLQ
RLAKDSGLGQSTGHNICLGIGLQ*

RE75220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14410-PA 456 GF14410-PA 1..86 1..92 385 78.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23754-PA 458 GG23754-PA 1..88 1..92 444 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13097-PA 457 GH13097-PA 1..87 1..92 352 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
Qtzl-PC 123 CG31864-PC 1..123 1..123 618 100 Plus
Qtzl-PA 123 CG31864-PA 1..123 1..123 618 100 Plus
Nfs1-PA 462 CG12264-PA 1..92 1..92 462 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14175-PA 460 GI14175-PA 1..90 1..92 313 72.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16085-PA 465 GL16085-PA 1..95 1..92 382 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11518-PA 465 GA11518-PA 1..95 1..92 385 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26695-PA 458 GM26695-PA 1..88 1..92 450 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23806-PA 430 GD23806-PA 1..73 1..77 352 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17504-PA 467 GJ17504-PA 1..97 1..92 318 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23747-PA 461 GK23747-PA 1..91 1..92 297 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18561-PA 462 GE18561-PA 1..92 1..92 480 97.8 Plus