Clone RH01238 Report

Search the DGRC for RH01238

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:12
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG13077-RA
Protein status:RH01238.pep: gold
Preliminary Size:810
Sequenced Size:1165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13077 2002-01-01 Sim4 clustering to Release 2
CG13077 2002-11-12 Blastp of sequenced clone
CG13077 2003-01-01 Sim4 clustering to Release 3
CG13077 2008-04-29 Release 5.5 accounting
CG13077 2008-08-15 Release 5.9 accounting
CG13077 2008-12-18 5.12 accounting

Clone Sequence Records

RH01238.complete Sequence

1165 bp (1165 high quality bases) assembled on 2002-11-12

GenBank Submission: AY075529

> RH01238.complete
CAGGCCAGTTGCTCATAAACATTCGACCAAATGGTTTGATTAACCAAGTT
CATTGAGCGTATCGTATCGGTCGAATTCTAAAACTTTAATTGCTGTCGTA
GCTTGAGCACACGACTGGTTTTGCCAATAATAAAAAATTTGCCGCAATTT
GTCTGTGAAAAGTGGCAGGCATTATTATCAGTCGACAAATGTATGAATGT
TAACACGAAAATAACATTATTCCAGCGCGCACTGATAAAGGCCGGCAAGC
GAAAAACTGAAAACTGAAACTACACAATGTCCGAGAGTAAGCAGCCAGTG
CTTAGTAGAACTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGA
TACGCCACGCCGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATT
CGAAAATGGCCCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTC
CAGAGACTGGAGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATT
TATCACCATCTATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCA
CGGGTCTGCATGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCC
GAGGGCGTCATGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAA
GCGTCAGACGAAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCG
GTTGCGGGGCAGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTG
CTGCAATCGACACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCAT
TCTGGCCATGTCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGA
AGCTAATCACACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTC
GCGTGCTTTGTGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGG
CTACTTTAAGAGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCC
TCACCCTCATATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTC
TATCAGAAATGCAAAAATATATCGCAACAGTTTTAGATAGGATGAAAAGA
ATCACTCGAATGTATGTAGATAAATAAATGTAATTTTTTCTAAAACCCCA
AAAAAAAAAAAAAAA

RH01238.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1161 CG13077-RA 14..1160 4..1150 5720 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19564403..19564981 4..582 2895 100 Plus
chr2L 23010047 chr2L 19565525..19565899 775..1149 1875 100 Plus
chr2L 23010047 chr2L 19565047..19565241 582..776 960 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19565863..19566441 4..582 2895 100 Plus
2L 23513712 2L 19566985..19567360 775..1150 1880 100 Plus
2L 23513712 2L 19566507..19566701 582..776 960 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19565863..19566441 4..582 2895 100 Plus
2L 23513712 2L 19566985..19567360 775..1150 1880 100 Plus
2L 23513712 2L 19566507..19566701 582..776 960 99.4 Plus
Blast to na_te.dros performed on 2019-03-16 04:14:36 has no hits.

RH01238.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:15:36 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19564402..19564981 1..582 99 -> Plus
chr2L 19565048..19565240 583..775 99 -> Plus
chr2L 19565526..19565899 776..1149 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:37:56 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..810 277..1086 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:59 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..810 277..1086 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:32 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..810 277..1086 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:09 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..810 277..1086 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:34 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..810 277..1086 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:24 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 2..1147 4..1149 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:59 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..1146 4..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:32 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..1146 4..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:09 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 2..1147 4..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:34 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 1..1146 4..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:36 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19565862..19566441 1..582 99 -> Plus
2L 19566508..19566700 583..775 99 -> Plus
2L 19566986..19567359 776..1149 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:36 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19565862..19566441 1..582 99 -> Plus
2L 19566508..19566700 583..775 99 -> Plus
2L 19566986..19567359 776..1149 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:36 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19565862..19566441 1..582 99 -> Plus
2L 19566508..19566700 583..775 99 -> Plus
2L 19566986..19567359 776..1149 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:32 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19565862..19566441 1..582 99 -> Plus
arm_2L 19566508..19566700 583..775 99 -> Plus
arm_2L 19566986..19567359 776..1149 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:31 Download gff for RH01238.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19565862..19566441 1..582 99 -> Plus
2L 19566508..19566700 583..775 99 -> Plus
2L 19566986..19567359 776..1149 100   Plus

RH01238.pep Sequence

Translation from 276 to 1085

> RH01238.pep
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQF*

RH01238.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14251-PA 269 GF14251-PA 5..269 1..269 1176 85.9 Plus
Dana\GF14250-PA 222 GF14250-PA 7..221 53..266 544 50 Plus
Dana\GF15625-PA 229 GF15625-PA 4..217 48..263 199 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21200-PA 269 GG21200-PA 1..269 1..269 1308 94.8 Plus
Dere\GG21199-PA 222 GG21199-PA 7..216 53..261 508 49.3 Plus
Dere\GG21623-PA 228 GG21623-PA 13..222 60..268 176 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13427-PA 279 GH13427-PA 1..278 1..268 906 69.8 Plus
Dgri\GH13958-PA 226 GH13958-PA 1..226 44..269 871 80.1 Plus
Dgri\GH13959-PA 226 GH13959-PA 1..226 44..269 861 76.5 Plus
Dgri\GH13426-PA 222 GH13426-PA 7..217 53..262 517 50.5 Plus
Dgri\GH13501-PA 230 GH13501-PA 17..226 60..268 220 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 269 CG13077-PA 1..269 1..269 1393 100 Plus
CG13077-PB 226 CG13077-PB 1..226 44..269 1173 100 Plus
CG13078-PA 222 CG13078-PA 12..221 58..266 521 50.2 Plus
CG10165-PD 228 CG10165-PD 13..222 60..268 206 25.7 Plus
CG10165-PC 228 CG10165-PC 13..222 60..268 206 25.7 Plus
CG10165-PE 228 CG10165-PE 13..222 60..268 206 25.7 Plus
CG10165-PB 228 CG10165-PB 13..222 60..268 206 25.7 Plus
CG10165-PA 228 CG10165-PA 13..222 60..268 206 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13943-PA 288 GI13943-PA 1..288 1..269 1026 73 Plus
Dmoj\GI13934-PA 222 GI13934-PA 12..216 58..261 532 52.9 Plus
Dmoj\GI10191-PA 228 GI10191-PA 1..226 44..268 231 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25554-PA 226 GL25554-PA 1..226 44..269 1037 84.5 Plus
Dper\GL25553-PA 222 GL25553-PA 12..221 58..266 525 49.3 Plus
Dper\GL25680-PA 228 GL25680-PA 1..222 44..268 221 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12027-PA 226 GA12027-PA 1..226 44..269 1037 84.5 Plus
Dpse\GA12028-PA 222 GA12028-PA 12..221 58..266 525 49.3 Plus
Dpse\GA10125-PA 228 GA10125-PA 1..222 44..268 221 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17371-PA 269 GM17371-PA 1..269 1..269 1386 96.7 Plus
Dsec\GM17369-PA 126 GM17369-PA 2..125 144..266 276 44.8 Plus
Dsec\GM17368-PA 72 GM17368-PA 12..72 58..118 198 60.7 Plus
Dsec\GM17001-PA 228 GM17001-PA 3..222 50..268 198 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24227-PA 269 GD24227-PA 1..269 1..269 1318 96.3 Plus
Dsim\GD24226-PA 222 GD24226-PA 12..221 58..266 522 50.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18231-PA 280 GJ18231-PA 1..280 1..269 975 71.5 Plus
Dvir\GJ18230-PA 224 GJ18230-PA 9..223 53..266 507 49.1 Plus
Dvir\GJ18011-PA 229 GJ18011-PA 16..225 60..268 219 28.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14918-PA 283 GK14918-PA 1..283 1..269 1010 71 Plus
Dwil\GK14917-PA 222 GK14917-PA 12..220 58..265 530 51 Plus
Dwil\GK23711-PA 229 GK23711-PA 13..212 60..258 185 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13274-PA 269 GE13274-PA 1..269 1..269 1293 93.7 Plus
Dyak\GE13272-PA 222 GE13272-PA 12..216 58..261 525 51 Plus
Dyak\GE12642-PA 228 GE12642-PA 3..222 50..268 205 26.4 Plus

RH01238.hyp Sequence

Translation from 276 to 1085

> RH01238.hyp
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQF*

RH01238.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 269 CG13077-PA 1..269 1..269 1393 100 Plus
CG13077-PB 226 CG13077-PB 1..226 44..269 1173 100 Plus
CG13078-PA 222 CG13078-PA 12..221 58..266 521 50.2 Plus
CG10165-PD 228 CG10165-PD 13..222 60..268 206 25.7 Plus
CG10165-PC 228 CG10165-PC 13..222 60..268 206 25.7 Plus