BDGP Sequence Production Resources |
Search the DGRC for RH01238
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 12 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13077-RA |
Protein status: | RH01238.pep: gold |
Preliminary Size: | 810 |
Sequenced Size: | 1165 |
Gene | Date | Evidence |
---|---|---|
CG13077 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13077 | 2002-11-12 | Blastp of sequenced clone |
CG13077 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13077 | 2008-04-29 | Release 5.5 accounting |
CG13077 | 2008-08-15 | Release 5.9 accounting |
CG13077 | 2008-12-18 | 5.12 accounting |
1165 bp (1165 high quality bases) assembled on 2002-11-12
GenBank Submission: AY075529
> RH01238.complete CAGGCCAGTTGCTCATAAACATTCGACCAAATGGTTTGATTAACCAAGTT CATTGAGCGTATCGTATCGGTCGAATTCTAAAACTTTAATTGCTGTCGTA GCTTGAGCACACGACTGGTTTTGCCAATAATAAAAAATTTGCCGCAATTT GTCTGTGAAAAGTGGCAGGCATTATTATCAGTCGACAAATGTATGAATGT TAACACGAAAATAACATTATTCCAGCGCGCACTGATAAAGGCCGGCAAGC GAAAAACTGAAAACTGAAACTACACAATGTCCGAGAGTAAGCAGCCAGTG CTTAGTAGAACTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGA TACGCCACGCCGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATT CGAAAATGGCCCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTC CAGAGACTGGAGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATT TATCACCATCTATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCA CGGGTCTGCATGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCC GAGGGCGTCATGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAA GCGTCAGACGAAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCG GTTGCGGGGCAGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTG CTGCAATCGACACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCAT TCTGGCCATGTCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGA AGCTAATCACACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTC GCGTGCTTTGTGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGG CTACTTTAAGAGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCC TCACCCTCATATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTC TATCAGAAATGCAAAAATATATCGCAACAGTTTTAGATAGGATGAAAAGA ATCACTCGAATGTATGTAGATAAATAAATGTAATTTTTTCTAAAACCCCA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13077-RA | 1161 | CG13077-RA | 14..1160 | 4..1150 | 5720 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19564403..19564981 | 4..582 | 2895 | 100 | Plus |
chr2L | 23010047 | chr2L | 19565525..19565899 | 775..1149 | 1875 | 100 | Plus |
chr2L | 23010047 | chr2L | 19565047..19565241 | 582..776 | 960 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19565863..19566441 | 4..582 | 2895 | 100 | Plus |
2L | 23513712 | 2L | 19566985..19567360 | 775..1150 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 582..776 | 960 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19565863..19566441 | 4..582 | 2895 | 100 | Plus |
2L | 23513712 | 2L | 19566985..19567360 | 775..1150 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 582..776 | 960 | 99.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19564402..19564981 | 1..582 | 99 | -> | Plus |
chr2L | 19565048..19565240 | 583..775 | 99 | -> | Plus |
chr2L | 19565526..19565899 | 776..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..810 | 277..1086 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..810 | 277..1086 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..810 | 277..1086 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..810 | 277..1086 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..810 | 277..1086 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 2..1147 | 4..1149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..1146 | 4..1149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..1146 | 4..1149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 2..1147 | 4..1149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13077-RA | 1..1146 | 4..1149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19565862..19566441 | 1..582 | 99 | -> | Plus |
2L | 19566508..19566700 | 583..775 | 99 | -> | Plus |
2L | 19566986..19567359 | 776..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19565862..19566441 | 1..582 | 99 | -> | Plus |
2L | 19566508..19566700 | 583..775 | 99 | -> | Plus |
2L | 19566986..19567359 | 776..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19565862..19566441 | 1..582 | 99 | -> | Plus |
2L | 19566508..19566700 | 583..775 | 99 | -> | Plus |
2L | 19566986..19567359 | 776..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19565862..19566441 | 1..582 | 99 | -> | Plus |
arm_2L | 19566508..19566700 | 583..775 | 99 | -> | Plus |
arm_2L | 19566986..19567359 | 776..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19565862..19566441 | 1..582 | 99 | -> | Plus |
2L | 19566508..19566700 | 583..775 | 99 | -> | Plus |
2L | 19566986..19567359 | 776..1149 | 100 | Plus |
Translation from 276 to 1085
> RH01238.pep MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS SYGPMKALYQKCKNISQQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14251-PA | 269 | GF14251-PA | 5..269 | 1..269 | 1176 | 85.9 | Plus |
Dana\GF14250-PA | 222 | GF14250-PA | 7..221 | 53..266 | 544 | 50 | Plus |
Dana\GF15625-PA | 229 | GF15625-PA | 4..217 | 48..263 | 199 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21200-PA | 269 | GG21200-PA | 1..269 | 1..269 | 1308 | 94.8 | Plus |
Dere\GG21199-PA | 222 | GG21199-PA | 7..216 | 53..261 | 508 | 49.3 | Plus |
Dere\GG21623-PA | 228 | GG21623-PA | 13..222 | 60..268 | 176 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13427-PA | 279 | GH13427-PA | 1..278 | 1..268 | 906 | 69.8 | Plus |
Dgri\GH13958-PA | 226 | GH13958-PA | 1..226 | 44..269 | 871 | 80.1 | Plus |
Dgri\GH13959-PA | 226 | GH13959-PA | 1..226 | 44..269 | 861 | 76.5 | Plus |
Dgri\GH13426-PA | 222 | GH13426-PA | 7..217 | 53..262 | 517 | 50.5 | Plus |
Dgri\GH13501-PA | 230 | GH13501-PA | 17..226 | 60..268 | 220 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13077-PA | 269 | CG13077-PA | 1..269 | 1..269 | 1393 | 100 | Plus |
CG13077-PB | 226 | CG13077-PB | 1..226 | 44..269 | 1173 | 100 | Plus |
CG13078-PA | 222 | CG13078-PA | 12..221 | 58..266 | 521 | 50.2 | Plus |
CG10165-PD | 228 | CG10165-PD | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PC | 228 | CG10165-PC | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PE | 228 | CG10165-PE | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PB | 228 | CG10165-PB | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PA | 228 | CG10165-PA | 13..222 | 60..268 | 206 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13943-PA | 288 | GI13943-PA | 1..288 | 1..269 | 1026 | 73 | Plus |
Dmoj\GI13934-PA | 222 | GI13934-PA | 12..216 | 58..261 | 532 | 52.9 | Plus |
Dmoj\GI10191-PA | 228 | GI10191-PA | 1..226 | 44..268 | 231 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25554-PA | 226 | GL25554-PA | 1..226 | 44..269 | 1037 | 84.5 | Plus |
Dper\GL25553-PA | 222 | GL25553-PA | 12..221 | 58..266 | 525 | 49.3 | Plus |
Dper\GL25680-PA | 228 | GL25680-PA | 1..222 | 44..268 | 221 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12027-PA | 226 | GA12027-PA | 1..226 | 44..269 | 1037 | 84.5 | Plus |
Dpse\GA12028-PA | 222 | GA12028-PA | 12..221 | 58..266 | 525 | 49.3 | Plus |
Dpse\GA10125-PA | 228 | GA10125-PA | 1..222 | 44..268 | 221 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17371-PA | 269 | GM17371-PA | 1..269 | 1..269 | 1386 | 96.7 | Plus |
Dsec\GM17369-PA | 126 | GM17369-PA | 2..125 | 144..266 | 276 | 44.8 | Plus |
Dsec\GM17368-PA | 72 | GM17368-PA | 12..72 | 58..118 | 198 | 60.7 | Plus |
Dsec\GM17001-PA | 228 | GM17001-PA | 3..222 | 50..268 | 198 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24227-PA | 269 | GD24227-PA | 1..269 | 1..269 | 1318 | 96.3 | Plus |
Dsim\GD24226-PA | 222 | GD24226-PA | 12..221 | 58..266 | 522 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18231-PA | 280 | GJ18231-PA | 1..280 | 1..269 | 975 | 71.5 | Plus |
Dvir\GJ18230-PA | 224 | GJ18230-PA | 9..223 | 53..266 | 507 | 49.1 | Plus |
Dvir\GJ18011-PA | 229 | GJ18011-PA | 16..225 | 60..268 | 219 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14918-PA | 283 | GK14918-PA | 1..283 | 1..269 | 1010 | 71 | Plus |
Dwil\GK14917-PA | 222 | GK14917-PA | 12..220 | 58..265 | 530 | 51 | Plus |
Dwil\GK23711-PA | 229 | GK23711-PA | 13..212 | 60..258 | 185 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13274-PA | 269 | GE13274-PA | 1..269 | 1..269 | 1293 | 93.7 | Plus |
Dyak\GE13272-PA | 222 | GE13272-PA | 12..216 | 58..261 | 525 | 51 | Plus |
Dyak\GE12642-PA | 228 | GE12642-PA | 3..222 | 50..268 | 205 | 26.4 | Plus |
Translation from 276 to 1085
> RH01238.hyp MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS SYGPMKALYQKCKNISQQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13077-PA | 269 | CG13077-PA | 1..269 | 1..269 | 1393 | 100 | Plus |
CG13077-PB | 226 | CG13077-PB | 1..226 | 44..269 | 1173 | 100 | Plus |
CG13078-PA | 222 | CG13078-PA | 12..221 | 58..266 | 521 | 50.2 | Plus |
CG10165-PD | 228 | CG10165-PD | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PC | 228 | CG10165-PC | 13..222 | 60..268 | 206 | 25.7 | Plus |