BDGP Sequence Production Resources |
Search the DGRC for RH01319
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 13 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ade5-RB |
Protein status: | RH01319.pep: gold |
Sequenced Size: | 1862 |
Gene | Date | Evidence |
---|---|---|
ade5 | 2010-12-02 | CDS novel splice |
1862 bp assembled on 2011-02-18
GenBank Submission: BT126073.1
> RH01319.complete GATAGGTTGCTTTGGAGCGATTCTTTGATGCAGACGAACATCGGAGTTTG CGGATTGTAATAATAGAGCCAAGCGGAGAGAGCGAAAAAGACAGAGAGAG AGATAGAGAGCGAGAGCGAGAGGGAAGGCACCAGCGAATATCGAGCATAA AGCAAAGCCCGCAACACGTGAAACAGCCAGCAGCCAATTGATTTCAATTT CGATTCTTAAAGTGAAGTGACCAACAACGTGCGATTAACGAGATGTCCAC CACCACAACAGCATCCAAGGGCTATAAGCTCGGCAAGGTCATCATCGAGG GCAAAACCAAACAGGTGTACGATCTGCCAGAGCAGCCAGGACTTTGCCTG CTCCTCAGCAAGGATCGCATCACCGCCGGCGATGGTGTCAAAGCACATGA TCTGGCCGGCAAGGCGGAGATCTCCAATACCACCAACGGTCAGGTCTTCC GGCTGCTCAACGAGGCAGGCATTCGCACCGCCTATGTGAAGCAGTGCGGC GCCAAGGCCTTCATCGCCCGCAAGTGCCAGATGATACCCATTGAGTGGGT GACCCGTCGCCTGGCCACCGGTTCGTTCCTCAAGCGCAATGTCGGCGTGC CCGAGGGCTACAGGTTCTCGCCGCCCAAACAGGAGACGTTCTTCAAGGAT GATGCCAACCACGATCCCCAGTGGAGCGAGGAGCAAATTGTCTCCGCCAA GTTCGAGCTAAATGGCCTGGTGATCGGCCAAGATGAGGTGGACATTATGC GTAGAACCACACTGCTGGTCTTCGAGATTCTCGAGAGGGCATGGCAGACC AAGAATTGCGCCCTGATCGACATGAAAGTGGAGTTCGGTATCTGCGACGA TGGCAACATAGTTCTGGCCGATATCATTGATTCCGATTCGTGGCGCTTGT GGCCAGCGGGTGACAAGCGTTTGATGGTCGACAAGCAGGTGTATCGCAAT CTGGCATCGGTGACGGCCAGCGATTTGGATACCGTAAAGAGGAACTTCAT TTGGGTGGCCGAACAACTGGCTGATATTGTGCCCAAGAAGGATCACCTGG TTGTCATTCTGATGGGCAGTGCTTCCGATATATCGCACAGCGAGAAGATA GCCACCAGCTGTCGATCCCTCGGCCTTAATGTGGAACTTCGCGTGAGTTC GGCCCACAAGGGACCGGAGGAAACGTTGCGCATTGTCCGCGAATATGAAT CGGTGATGAGCAACTTGATCTTTGTGGCCGTCGCCGGGCGATCCAATGGA CTGGGTCCAGTCGTTTCCGGCAGCACCAACTATCCGGTAATCAATTGTCC GCCCGTCAAATCGGACAACATGCAGGTGGACGTGTGGTCCAGCTTGAATC TGCCATCGGGGCTGGGCTGTGCCACAGTTCTCTATCCAGAGGCAGCTGCT CTGCATGCGGCCACCATTCTGGGGCTGGGCAACTTCATGGTCTGGTCGAA ATTGCGTGTCAAGGCGCTCAACAACTTTATCACTCTCAAGAAGGCCGACA AGGAGTTGCGCGGCGTGCGAAATGCTTAGTTGCTGGTTATCATAGCTTAT GGTGGGAGATATCAGCATTGGATATCAACCAGGAGGCCATATATAGAGAA TCCTTCCCTGATCATTGCCGTTCGGCGATCATCCAGGGATCCCATAAAGG TCATCATCAGATCACATACTTTGTTAATTTTTCTTTTTCCTATTTTTTTT TTTTTGAAACCAAACATTTTTTTATTAGTATTAGGAAAGCATGACTTCAA CTTGTTGTACCACGTTCTTGACAGGTTACGAACTCGAAATAACAAAAAAT AAAAATTACATTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAGAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 12648652..12649748 | 1822..726 | 5410 | 99.5 | Minus |
chrX | 22417052 | chrX | 12651250..12651505 | 267..6 | 1155 | 96.9 | Minus |
chrX | 22417052 | chrX | 12650600..12650801 | 469..268 | 1010 | 100 | Minus |
chrU | 10048995 | chrU | 9850172..9850373 | 469..268 | 920 | 97 | Minus |
chrU | 10048995 | chrU | 8923745..8923946 | 268..469 | 905 | 96.5 | Plus |
chrU | 10048995 | chrU | 2929600..2929801 | 469..268 | 905 | 96.5 | Minus |
chrU | 10048995 | chrU | 6763163..6763406 | 267..6 | 825 | 88.5 | Minus |
chrX | 22417052 | chrX | 12650353..12650503 | 616..466 | 740 | 99.3 | Minus |
chrU | 10048995 | chrU | 2930228..2930464 | 267..6 | 700 | 86.3 | Minus |
chr2L | 23010047 | chr2L | 12452355..12453007 | 282..934 | 700 | 73.8 | Plus |
chrU | 10048995 | chrU | 9898076..9898221 | 268..413 | 640 | 95.9 | Plus |
chrU | 10048995 | chrU | 8924042..8924189 | 465..616 | 620 | 95.4 | Plus |
chrU | 10048995 | chrU | 9897465..9897694 | 6..267 | 575 | 84 | Plus |
chrX | 22417052 | chrX | 12649815..12649931 | 727..611 | 570 | 99.1 | Minus |
chrU | 10048995 | chrU | 6762536..6762677 | 409..268 | 560 | 93 | Minus |
chrU | 10048995 | chrU | 2929374..2929504 | 599..465 | 550 | 95.6 | Minus |
chrU | 10048995 | chrU | 9849976..9850101 | 599..470 | 510 | 94.6 | Minus |
chrU | 10048995 | chrU | 5678986..5679041 | 61..6 | 235 | 94.6 | Minus |
chrU | 10048995 | chrU | 5680633..5680688 | 61..6 | 220 | 92.9 | Minus |
chrU | 10048995 | chrU | 9327932..9327987 | 6..61 | 220 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 12757759..12758855 | 1822..726 | 5455 | 99.8 | Minus |
X | 23542271 | X | 12760349..12760610 | 267..6 | 1310 | 100 | Minus |
X | 23542271 | X | 12759711..12759912 | 469..268 | 1010 | 100 | Minus |
Y | 3667352 | Y | 3059275..3059476 | 469..268 | 920 | 97 | Minus |
Y | 3667352 | Y | 3231314..3231515 | 268..469 | 920 | 97 | Plus |
Y | 3667352 | Y | 3267332..3267533 | 469..268 | 905 | 96.5 | Minus |
U | 3151297 | U | 2460019..2460220 | 268..469 | 905 | 96.5 | Plus |
Y | 3667352 | Y | 3059906..3060149 | 267..6 | 840 | 88.9 | Minus |
Y | 3667352 | Y | 3205096..3205339 | 6..267 | 840 | 88.9 | Plus |
Y | 3667352 | Y | 3230641..3230884 | 6..267 | 840 | 88.9 | Plus |
Y | 3667352 | Y | 3092358..3092601 | 267..6 | 825 | 88.5 | Minus |
Ymm | 880023 | Ymm | 632030..632273 | 267..6 | 825 | 88.5 | Minus |
X | 23542271 | X | 12759460..12759610 | 616..466 | 755 | 100 | Minus |
Y | 3667352 | Y | 3267960..3268196 | 267..6 | 700 | 86.3 | Minus |
2L | 23513712 | 2L | 12453715..12454367 | 282..934 | 700 | 73.8 | Plus |
Ymm | 880023 | Ymm | 562059..562204 | 268..413 | 640 | 95.9 | Plus |
Y | 3667352 | Y | 3267089..3267236 | 616..465 | 620 | 95.4 | Minus |
U | 3151297 | U | 2460316..2460463 | 465..616 | 620 | 95.4 | Plus |
X | 23542271 | X | 12758922..12759038 | 727..611 | 585 | 100 | Minus |
Y | 3667352 | Y | 3059062..3059204 | 616..470 | 580 | 94.6 | Minus |
Ymm | 880023 | Ymm | 561448..561677 | 6..267 | 575 | 84 | Plus |
Y | 3667352 | Y | 3091728..3091869 | 409..268 | 560 | 93 | Minus |
Y | 3667352 | Y | 3205825..3205966 | 268..409 | 560 | 93 | Plus |
Ymm | 880023 | Ymm | 631403..631544 | 409..268 | 560 | 93 | Minus |
Y | 3667352 | Y | 3231586..3231711 | 470..599 | 510 | 94.6 | Plus |
Y | 3667352 | Y | 3211752..3211807 | 61..6 | 235 | 94.6 | Minus |
Y | 3667352 | Y | 3219252..3219307 | 6..61 | 235 | 94.6 | Plus |
Ymm | 880023 | Ymm | 541657..541712 | 61..6 | 235 | 94.6 | Minus |
Y | 3667352 | Y | 3071450..3071505 | 61..6 | 220 | 92.9 | Minus |
Y | 3667352 | Y | 3085859..3085914 | 6..61 | 220 | 92.9 | Plus |
Ymm | 880023 | Ymm | 543304..543359 | 61..6 | 220 | 92.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 12765857..12766953 | 1822..726 | 5455 | 99.8 | Minus |
X | 23527363 | X | 12768447..12768708 | 267..6 | 1310 | 100 | Minus |
X | 23527363 | X | 12767809..12768010 | 469..268 | 1010 | 100 | Minus |
Y | 3410481 | Y | 3077784..3077985 | 268..469 | 920 | 97 | Plus |
Y | 3410481 | Y | 2905745..2905946 | 469..268 | 920 | 97 | Minus |
Unmapped_scaffold_16 | 28895 | Unmapped_scaffold_16 | 12189..12390 | 469..268 | 905 | 96.5 | Minus |
X | 23527363 | X | 12767558..12767708 | 616..466 | 755 | 100 | Minus |
Y | 3410481 | Y | 3077199..3077354 | 112..267 | 660 | 94.8 | Plus |
Y | 3410481 | Y | 3051654..3051809 | 112..267 | 660 | 94.8 | Plus |
Y | 3410481 | Y | 2906376..2906531 | 267..112 | 660 | 94.8 | Minus |
Unmapped_scaffold_16 | 28895 | Unmapped_scaffold_16 | 12817..12972 | 267..112 | 660 | 94.8 | Minus |
Y | 3410481 | Y | 2938828..2938983 | 267..112 | 645 | 94.2 | Minus |
Unmapped_scaffold_16 | 28895 | Unmapped_scaffold_16 | 11946..12093 | 616..465 | 630 | 95.3 | Minus |
Y | 3410481 | Y | 2905532..2905674 | 616..470 | 590 | 94.5 | Minus |
X | 23527363 | X | 12767020..12767136 | 727..611 | 585 | 100 | Minus |
Y | 3410481 | Y | 3052295..3052436 | 268..409 | 560 | 92.9 | Plus |
Y | 3410481 | Y | 2938198..2938339 | 409..268 | 560 | 92.9 | Minus |
Y | 3410481 | Y | 3078056..3078181 | 470..599 | 520 | 94.6 | Plus |
Y | 3410481 | Y | 3051566..3051662 | 6..102 | 425 | 95.8 | Plus |
Y | 3410481 | Y | 3077111..3077207 | 6..102 | 425 | 95.8 | Plus |
Y | 3410481 | Y | 2906523..2906619 | 102..6 | 425 | 95.8 | Minus |
Y | 3410481 | Y | 2938975..2939071 | 102..6 | 425 | 95.8 | Minus |
2L | 23513712 | 2L | 12454066..12454367 | 633..934 | 385 | 75.1 | Plus |
Unmapped_scaffold_16 | 28895 | Unmapped_scaffold_16 | 12964..13053 | 102..6 | 295 | 88.6 | Minus |
2L | 23513712 | 2L | 12453841..12454004 | 408..571 | 265 | 77.4 | Plus |
Y | 3410481 | Y | 3065722..3065777 | 6..61 | 235 | 94.6 | Plus |
Y | 3410481 | Y | 3058222..3058277 | 61..6 | 235 | 94.6 | Minus |
Y | 3410481 | Y | 2932329..2932384 | 6..61 | 220 | 92.8 | Plus |
Y | 3410481 | Y | 2917920..2917975 | 61..6 | 220 | 92.8 | Minus |
2L | 23513712 | 2L | 12453715..12453803 | 282..370 | 175 | 79.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 12649816..12649928 | 614..726 | 99 | <- | Minus |
chrX | 12650356..12650500 | 469..613 | 99 | <- | Minus |
chrX | 12648653..12649747 | 727..1821 | 99 | <- | Minus |
chrX | 12650601..12650799 | 270..468 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RA | 1..1290 | 243..1529 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RB | 1..1287 | 243..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RB | 1..1287 | 243..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RA | 4..1827 | 1..1821 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RB | 3..1823 | 1..1821 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ade5-RB | 3..1823 | 1..1821 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12757760..12758854 | 727..1821 | 99 | <- | Minus |
X | 12758923..12759035 | 614..726 | 100 | <- | Minus |
X | 12759463..12759607 | 469..613 | 100 | <- | Minus |
X | 12759712..12759912 | 268..468 | 100 | <- | Minus |
X | 12760349..12760615 | 1..267 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12757760..12758854 | 727..1821 | 99 | <- | Minus |
X | 12758923..12759035 | 614..726 | 100 | <- | Minus |
X | 12759463..12759607 | 469..613 | 100 | <- | Minus |
X | 12759712..12759912 | 268..468 | 100 | <- | Minus |
X | 12760349..12760615 | 1..267 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12757760..12758854 | 727..1821 | 99 | <- | Minus |
X | 12758923..12759035 | 614..726 | 100 | <- | Minus |
X | 12759463..12759607 | 469..613 | 100 | <- | Minus |
X | 12759712..12759912 | 268..468 | 100 | <- | Minus |
X | 12760349..12760615 | 1..267 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 12651793..12652887 | 727..1821 | 99 | <- | Minus |
arm_X | 12652956..12653068 | 614..726 | 100 | <- | Minus |
arm_X | 12653496..12653640 | 469..613 | 100 | <- | Minus |
arm_X | 12653745..12653945 | 268..468 | 100 | <- | Minus |
arm_X | 12654382..12654648 | 1..267 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12767561..12767705 | 469..613 | 100 | <- | Minus |
X | 12767810..12768010 | 268..468 | 100 | <- | Minus |
X | 12765858..12766952 | 727..1821 | 99 | <- | Minus |
X | 12767021..12767133 | 614..726 | 100 | <- | Minus |
X | 12768447..12768713 | 1..267 | 98 | Minus |
Translation from 242 to 1528
> RH01319.pep MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGVK AHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPI EWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIV SAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGI CDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVKR NFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVELR VSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPVI NCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFMV WSKLRVKALNNFITLKKADKELRGVRNA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20891-PA | 426 | GF20891-PA | 3..426 | 5..428 | 2174 | 94.6 | Plus |
Dana\GF20892-PA | 194 | GF20892-PA | 1..159 | 16..174 | 722 | 84.3 | Plus |
Dana\GF20892-PA | 194 | GF20892-PA | 145..194 | 379..428 | 241 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19541-PA | 428 | GG19541-PA | 1..428 | 1..428 | 2256 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12574-PA | 428 | GH12574-PA | 1..428 | 1..428 | 2084 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Paics-PB | 428 | CG3989-PB | 1..428 | 1..428 | 2203 | 100 | Plus |
Paics-PA | 429 | CG3989-PA | 1..429 | 1..428 | 2187 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14693-PA | 428 | GI14693-PA | 1..427 | 1..427 | 2161 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15026-PA | 433 | GL15026-PA | 12..433 | 7..428 | 2156 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17827-PA | 426 | GA17827-PA | 2..426 | 4..428 | 2168 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11535-PA | 428 | GM11535-PA | 1..428 | 1..428 | 2244 | 97.7 | Plus |
Dsec\GM26849-PA | 370 | GM26849-PA | 4..366 | 6..428 | 1240 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15919-PA | 428 | GD15919-PA | 1..428 | 1..428 | 2257 | 98.4 | Plus |
Dsim\GD23841-PA | 413 | GD23841-PA | 4..408 | 6..427 | 1457 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16601-PA | 430 | GJ16601-PA | 12..429 | 10..427 | 2141 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16398-PA | 447 | GK16398-PA | 29..447 | 10..428 | 2147 | 94.5 | Plus |
Dwil\GK23628-PA | 233 | GK23628-PA | 4..233 | 177..428 | 996 | 76.2 | Plus |
Dwil\GK17812-PA | 155 | GK17812-PA | 1..155 | 228..400 | 644 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\ade5-PA | 428 | GE16201-PA | 1..428 | 1..428 | 2249 | 98.4 | Plus |
Translation from 242 to 1528
> RH01319.hyp MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGVK AHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPI EWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIV SAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGI CDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVKR NFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVELR VSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPVI NCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFMV WSKLRVKALNNFITLKKADKELRGVRNA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ade5-PB | 428 | CG3989-PB | 1..428 | 1..428 | 2203 | 100 | Plus |
ade5-PA | 429 | CG3989-PA | 1..429 | 1..428 | 2187 | 99.5 | Plus |
CG40801-PB | 142 | CG40801-PB | 20..122 | 9..111 | 517 | 97.1 | Plus |