Clone RH01319 Report

Search the DGRC for RH01319

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:13
Well:19
Vector:pFlc-1
Associated Gene/Transcriptade5-RB
Protein status:RH01319.pep: gold
Sequenced Size:1862

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ade5 2010-12-02 CDS novel splice

Clone Sequence Records

RH01319.complete Sequence

1862 bp assembled on 2011-02-18

GenBank Submission: BT126073.1

> RH01319.complete
GATAGGTTGCTTTGGAGCGATTCTTTGATGCAGACGAACATCGGAGTTTG
CGGATTGTAATAATAGAGCCAAGCGGAGAGAGCGAAAAAGACAGAGAGAG
AGATAGAGAGCGAGAGCGAGAGGGAAGGCACCAGCGAATATCGAGCATAA
AGCAAAGCCCGCAACACGTGAAACAGCCAGCAGCCAATTGATTTCAATTT
CGATTCTTAAAGTGAAGTGACCAACAACGTGCGATTAACGAGATGTCCAC
CACCACAACAGCATCCAAGGGCTATAAGCTCGGCAAGGTCATCATCGAGG
GCAAAACCAAACAGGTGTACGATCTGCCAGAGCAGCCAGGACTTTGCCTG
CTCCTCAGCAAGGATCGCATCACCGCCGGCGATGGTGTCAAAGCACATGA
TCTGGCCGGCAAGGCGGAGATCTCCAATACCACCAACGGTCAGGTCTTCC
GGCTGCTCAACGAGGCAGGCATTCGCACCGCCTATGTGAAGCAGTGCGGC
GCCAAGGCCTTCATCGCCCGCAAGTGCCAGATGATACCCATTGAGTGGGT
GACCCGTCGCCTGGCCACCGGTTCGTTCCTCAAGCGCAATGTCGGCGTGC
CCGAGGGCTACAGGTTCTCGCCGCCCAAACAGGAGACGTTCTTCAAGGAT
GATGCCAACCACGATCCCCAGTGGAGCGAGGAGCAAATTGTCTCCGCCAA
GTTCGAGCTAAATGGCCTGGTGATCGGCCAAGATGAGGTGGACATTATGC
GTAGAACCACACTGCTGGTCTTCGAGATTCTCGAGAGGGCATGGCAGACC
AAGAATTGCGCCCTGATCGACATGAAAGTGGAGTTCGGTATCTGCGACGA
TGGCAACATAGTTCTGGCCGATATCATTGATTCCGATTCGTGGCGCTTGT
GGCCAGCGGGTGACAAGCGTTTGATGGTCGACAAGCAGGTGTATCGCAAT
CTGGCATCGGTGACGGCCAGCGATTTGGATACCGTAAAGAGGAACTTCAT
TTGGGTGGCCGAACAACTGGCTGATATTGTGCCCAAGAAGGATCACCTGG
TTGTCATTCTGATGGGCAGTGCTTCCGATATATCGCACAGCGAGAAGATA
GCCACCAGCTGTCGATCCCTCGGCCTTAATGTGGAACTTCGCGTGAGTTC
GGCCCACAAGGGACCGGAGGAAACGTTGCGCATTGTCCGCGAATATGAAT
CGGTGATGAGCAACTTGATCTTTGTGGCCGTCGCCGGGCGATCCAATGGA
CTGGGTCCAGTCGTTTCCGGCAGCACCAACTATCCGGTAATCAATTGTCC
GCCCGTCAAATCGGACAACATGCAGGTGGACGTGTGGTCCAGCTTGAATC
TGCCATCGGGGCTGGGCTGTGCCACAGTTCTCTATCCAGAGGCAGCTGCT
CTGCATGCGGCCACCATTCTGGGGCTGGGCAACTTCATGGTCTGGTCGAA
ATTGCGTGTCAAGGCGCTCAACAACTTTATCACTCTCAAGAAGGCCGACA
AGGAGTTGCGCGGCGTGCGAAATGCTTAGTTGCTGGTTATCATAGCTTAT
GGTGGGAGATATCAGCATTGGATATCAACCAGGAGGCCATATATAGAGAA
TCCTTCCCTGATCATTGCCGTTCGGCGATCATCCAGGGATCCCATAAAGG
TCATCATCAGATCACATACTTTGTTAATTTTTCTTTTTCCTATTTTTTTT
TTTTTGAAACCAAACATTTTTTTATTAGTATTAGGAAAGCATGACTTCAA
CTTGTTGTACCACGTTCTTGACAGGTTACGAACTCGAAATAACAAAAAAT
AAAAATTACATTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAA

RH01319.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12648652..12649748 1822..726 5410 99.5 Minus
chrX 22417052 chrX 12651250..12651505 267..6 1155 96.9 Minus
chrX 22417052 chrX 12650600..12650801 469..268 1010 100 Minus
chrU 10048995 chrU 9850172..9850373 469..268 920 97 Minus
chrU 10048995 chrU 8923745..8923946 268..469 905 96.5 Plus
chrU 10048995 chrU 2929600..2929801 469..268 905 96.5 Minus
chrU 10048995 chrU 6763163..6763406 267..6 825 88.5 Minus
chrX 22417052 chrX 12650353..12650503 616..466 740 99.3 Minus
chrU 10048995 chrU 2930228..2930464 267..6 700 86.3 Minus
chr2L 23010047 chr2L 12452355..12453007 282..934 700 73.8 Plus
chrU 10048995 chrU 9898076..9898221 268..413 640 95.9 Plus
chrU 10048995 chrU 8924042..8924189 465..616 620 95.4 Plus
chrU 10048995 chrU 9897465..9897694 6..267 575 84 Plus
chrX 22417052 chrX 12649815..12649931 727..611 570 99.1 Minus
chrU 10048995 chrU 6762536..6762677 409..268 560 93 Minus
chrU 10048995 chrU 2929374..2929504 599..465 550 95.6 Minus
chrU 10048995 chrU 9849976..9850101 599..470 510 94.6 Minus
chrU 10048995 chrU 5678986..5679041 61..6 235 94.6 Minus
chrU 10048995 chrU 5680633..5680688 61..6 220 92.9 Minus
chrU 10048995 chrU 9327932..9327987 6..61 220 92.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12757759..12758855 1822..726 5455 99.8 Minus
X 23542271 X 12760349..12760610 267..6 1310 100 Minus
X 23542271 X 12759711..12759912 469..268 1010 100 Minus
Y 3667352 Y 3059275..3059476 469..268 920 97 Minus
Y 3667352 Y 3231314..3231515 268..469 920 97 Plus
Y 3667352 Y 3267332..3267533 469..268 905 96.5 Minus
U 3151297 U 2460019..2460220 268..469 905 96.5 Plus
Y 3667352 Y 3059906..3060149 267..6 840 88.9 Minus
Y 3667352 Y 3205096..3205339 6..267 840 88.9 Plus
Y 3667352 Y 3230641..3230884 6..267 840 88.9 Plus
Y 3667352 Y 3092358..3092601 267..6 825 88.5 Minus
Ymm 880023 Ymm 632030..632273 267..6 825 88.5 Minus
X 23542271 X 12759460..12759610 616..466 755 100 Minus
Y 3667352 Y 3267960..3268196 267..6 700 86.3 Minus
2L 23513712 2L 12453715..12454367 282..934 700 73.8 Plus
Ymm 880023 Ymm 562059..562204 268..413 640 95.9 Plus
Y 3667352 Y 3267089..3267236 616..465 620 95.4 Minus
U 3151297 U 2460316..2460463 465..616 620 95.4 Plus
X 23542271 X 12758922..12759038 727..611 585 100 Minus
Y 3667352 Y 3059062..3059204 616..470 580 94.6 Minus
Ymm 880023 Ymm 561448..561677 6..267 575 84 Plus
Y 3667352 Y 3091728..3091869 409..268 560 93 Minus
Y 3667352 Y 3205825..3205966 268..409 560 93 Plus
Ymm 880023 Ymm 631403..631544 409..268 560 93 Minus
Y 3667352 Y 3231586..3231711 470..599 510 94.6 Plus
Y 3667352 Y 3211752..3211807 61..6 235 94.6 Minus
Y 3667352 Y 3219252..3219307 6..61 235 94.6 Plus
Ymm 880023 Ymm 541657..541712 61..6 235 94.6 Minus
Y 3667352 Y 3071450..3071505 61..6 220 92.9 Minus
Y 3667352 Y 3085859..3085914 6..61 220 92.9 Plus
Ymm 880023 Ymm 543304..543359 61..6 220 92.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12765857..12766953 1822..726 5455 99.8 Minus
X 23527363 X 12768447..12768708 267..6 1310 100 Minus
X 23527363 X 12767809..12768010 469..268 1010 100 Minus
Y 3410481 Y 3077784..3077985 268..469 920 97 Plus
Y 3410481 Y 2905745..2905946 469..268 920 97 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12189..12390 469..268 905 96.5 Minus
X 23527363 X 12767558..12767708 616..466 755 100 Minus
Y 3410481 Y 3077199..3077354 112..267 660 94.8 Plus
Y 3410481 Y 3051654..3051809 112..267 660 94.8 Plus
Y 3410481 Y 2906376..2906531 267..112 660 94.8 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12817..12972 267..112 660 94.8 Minus
Y 3410481 Y 2938828..2938983 267..112 645 94.2 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 11946..12093 616..465 630 95.3 Minus
Y 3410481 Y 2905532..2905674 616..470 590 94.5 Minus
X 23527363 X 12767020..12767136 727..611 585 100 Minus
Y 3410481 Y 3052295..3052436 268..409 560 92.9 Plus
Y 3410481 Y 2938198..2938339 409..268 560 92.9 Minus
Y 3410481 Y 3078056..3078181 470..599 520 94.6 Plus
Y 3410481 Y 3051566..3051662 6..102 425 95.8 Plus
Y 3410481 Y 3077111..3077207 6..102 425 95.8 Plus
Y 3410481 Y 2906523..2906619 102..6 425 95.8 Minus
Y 3410481 Y 2938975..2939071 102..6 425 95.8 Minus
2L 23513712 2L 12454066..12454367 633..934 385 75.1 Plus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12964..13053 102..6 295 88.6 Minus
2L 23513712 2L 12453841..12454004 408..571 265 77.4 Plus
Y 3410481 Y 3065722..3065777 6..61 235 94.6 Plus
Y 3410481 Y 3058222..3058277 61..6 235 94.6 Minus
Y 3410481 Y 2932329..2932384 6..61 220 92.8 Plus
Y 3410481 Y 2917920..2917975 61..6 220 92.8 Minus
2L 23513712 2L 12453715..12453803 282..370 175 79.7 Plus
Blast to na_te.dros performed on 2019-03-17 01:43:17 has no hits.

RH01319.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:44:04 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12649816..12649928 614..726 99 <- Minus
chrX 12650356..12650500 469..613 99 <- Minus
chrX 12648653..12649747 727..1821 99 <- Minus
chrX 12650601..12650799 270..468 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-18 10:25:43 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 243..1529 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:50:22 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RB 1..1287 243..1529 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:08:43 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RB 1..1287 243..1529 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:25:43 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 4..1827 1..1821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:50:22 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RB 3..1823 1..1821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:08:43 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RB 3..1823 1..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:04 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 727..1821 99 <- Minus
X 12758923..12759035 614..726 100 <- Minus
X 12759463..12759607 469..613 100 <- Minus
X 12759712..12759912 268..468 100 <- Minus
X 12760349..12760615 1..267 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:04 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 727..1821 99 <- Minus
X 12758923..12759035 614..726 100 <- Minus
X 12759463..12759607 469..613 100 <- Minus
X 12759712..12759912 268..468 100 <- Minus
X 12760349..12760615 1..267 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:04 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 727..1821 99 <- Minus
X 12758923..12759035 614..726 100 <- Minus
X 12759463..12759607 469..613 100 <- Minus
X 12759712..12759912 268..468 100 <- Minus
X 12760349..12760615 1..267 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:50:22 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12651793..12652887 727..1821 99 <- Minus
arm_X 12652956..12653068 614..726 100 <- Minus
arm_X 12653496..12653640 469..613 100 <- Minus
arm_X 12653745..12653945 268..468 100 <- Minus
arm_X 12654382..12654648 1..267 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:59:21 Download gff for RH01319.complete
Subject Subject Range Query Range Percent Splice Strand
X 12767561..12767705 469..613 100 <- Minus
X 12767810..12768010 268..468 100 <- Minus
X 12765858..12766952 727..1821 99 <- Minus
X 12767021..12767133 614..726 100 <- Minus
X 12768447..12768713 1..267 98   Minus

RH01319.pep Sequence

Translation from 242 to 1528

> RH01319.pep
MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGVK
AHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPI
EWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIV
SAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGI
CDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVKR
NFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVELR
VSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPVI
NCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFMV
WSKLRVKALNNFITLKKADKELRGVRNA*

RH01319.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20891-PA 426 GF20891-PA 3..426 5..428 2174 94.6 Plus
Dana\GF20892-PA 194 GF20892-PA 1..159 16..174 722 84.3 Plus
Dana\GF20892-PA 194 GF20892-PA 145..194 379..428 241 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19541-PA 428 GG19541-PA 1..428 1..428 2256 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12574-PA 428 GH12574-PA 1..428 1..428 2084 89 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Paics-PB 428 CG3989-PB 1..428 1..428 2203 100 Plus
Paics-PA 429 CG3989-PA 1..429 1..428 2187 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14693-PA 428 GI14693-PA 1..427 1..427 2161 92.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15026-PA 433 GL15026-PA 12..433 7..428 2156 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17827-PA 426 GA17827-PA 2..426 4..428 2168 94.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11535-PA 428 GM11535-PA 1..428 1..428 2244 97.7 Plus
Dsec\GM26849-PA 370 GM26849-PA 4..366 6..428 1240 57.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15919-PA 428 GD15919-PA 1..428 1..428 2257 98.4 Plus
Dsim\GD23841-PA 413 GD23841-PA 4..408 6..427 1457 64.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16601-PA 430 GJ16601-PA 12..429 10..427 2141 94.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16398-PA 447 GK16398-PA 29..447 10..428 2147 94.5 Plus
Dwil\GK23628-PA 233 GK23628-PA 4..233 177..428 996 76.2 Plus
Dwil\GK17812-PA 155 GK17812-PA 1..155 228..400 644 74.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ade5-PA 428 GE16201-PA 1..428 1..428 2249 98.4 Plus

RH01319.hyp Sequence

Translation from 242 to 1528

> RH01319.hyp
MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGVK
AHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPI
EWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIV
SAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGI
CDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVKR
NFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVELR
VSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPVI
NCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFMV
WSKLRVKALNNFITLKKADKELRGVRNA*

RH01319.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-PB 428 CG3989-PB 1..428 1..428 2203 100 Plus
ade5-PA 429 CG3989-PA 1..429 1..428 2187 99.5 Plus
CG40801-PB 142 CG40801-PB 20..122 9..111 517 97.1 Plus