Clone RH01327 Report

Search the DGRC for RH01327

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:13
Well:27
Vector:pFlc-1
Associated Gene/Transcriptcrc-RA
Protein status:RH01327.pep: gold
Sequenced Size:1918

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
crc 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

RH01327.complete Sequence

1918 bp assembled on 2009-09-22

GenBank Submission: BT099797.1

> RH01327.complete
GATTACCGTTCCAAATGAAACGCAAAAAGGTTCAATTGTTATTTTCTCTC
ACGATTTCGGCATTTATATTAACCTAAAGATGGCTCTATAGTTTGCGCGC
AAGCAAAAACAAGCAGCACCTAGGTGCCCAAACACAACAAAATGGAAACG
TATAAAAATCAAAACGCCATCATGGCATTTTCACAACAACAAAACACACC
GCGAAAACAACCATTCTCATTCTTCGGACCGGATTTCATACTCTCAAAAC
AAAACATATCTTTGACCCCTGATTTGAACTCTGGATATGGACGCGACATT
TCACCAAACCATGGAGAGCTTGCAGTTGCCCAAGGAGCTGTACTGGGACC
TCAAGATGGAGCCACAATCCCCAACATCGGTTTTGGGCTCCGATCTGTTT
CCGCTCACTGACTCAAACGATACGGAGTGGCTGTATGACGATAACTTTGC
AAATGGCATTACTCTTATTGGCGATGATGAAGCCTTGACCCTGGAAGAGG
TAGCTTCTCTCCAGTTGCTTAGTGATGAGGAGATGGTTGTGGAGATCTTT
GACCTGAAAGATGAAGAATGTCTTTTGGACCAAAAGGCAACGTTGAACTG
CATCGATTATGACAGTAACAGCTTTCAGCCGAACATTAATGTTATAACTC
AGGCCATAGTACCCGCAAACAAAGTACAATTCGGTGCATCTTCAGACGCT
GCTTCGCTTCCTTCTGCCGCTGATTACCAGCTCAATGATGGCCCATCCCT
TATTCTACAGCAATTAACGCCGCCGCAGTCTCCGCCTCAATTCGATGCTT
ACAAACAGGCGGGCGATGCACAGCCAAAACCCGTGCTCGTAAAGGCCGAG
CAAAAGGTGCAATGCTATACTCCTGATGTTACACACGCAGCATCTGCCAC
GCCCTTTAACTTTACCAACTGGGTAGGCGGCAGCGAAATTGCCCGAGAGA
ACCAACTGGTCGATGATATCGTCAATATGCGTGCTAAGGAGCTCGAATTG
TCCACGAACTGGCAGCAGCTCAATGAGGACTGCGAGTCTCAGGCGTCTTC
ATCTTTAGACAGCAGAAGCACAGGAAGCGGAGTGTGCAGCAGCATCGCCG
ACGCCGACGAGGACTGGGTTCCAGAGCTTATCAGCAGCTCCTCCTCGCCA
GCTCCTACAACCATCGAGCAGTCTGCGTCCCAGCCAAAAAAGCGTACTCG
CACTTACGGGCGCGGTGTAGAGGATCGAAAGATCAGGAAAAAGGAGCAGA
ACAAGAACGCTGCCACACGATATCGCCAGAAAAAGAAACTTGAAATGGAG
AATGTGCTGGGCGAGGAGCATGTGCTGTCTAAAGAAAACGAGCAGCTTCG
TCGCACTCTGCAGGAGCGGCACAACGAAATGCGCTATCTGCGCCAGCTGA
TTCGAGAGTTCTACCATGAACGCAAGCGCTAGGCTTTATTTTCTTTGAAA
TCAATTTTATCGTCGTTTGCAAAGTTATTGTTATAGTTAAACCCAAGCCT
CTTCCATAAACTAATTGTCATCATAATGTTTCAATGTAATACTATCAATA
ACAATCTCCGGGTTGCCCAAAATCTACAAATCACCAAAGTACGCAGCCTG
TCCTTTGTCCTACATTTTTGGCACTAATGACGAGTCTCTGAATTCGGAAA
TATTTGTTGCCAGTGGGGCCTAAAGGCGACCCCATATCCCAAGCAGCACG
GTCCAATGTAAAAACACATTAATTGAAAAGCTCATTGATTTGTTTTTCTG
CAAATCGGACAGTGTTGCGGCTGCTGTGCTATTTCAAAAACACTTATATT
TTTAATCTGGTAGCATCTCGAAAGATGTAGATTTATTTTAATGTTTCATT
ATTTTTTTCATATTCAACATTGATCAGTAATAAATCAAAGGGTTTTTAAA
AGAAAAAAAAAAAAAAAA

RH01327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
cryptocephal-RA 2193 cryptocephal-RA 93..1996 2..1905 9520 100 Plus
cryptocephal.r 2585 cryptocephal.r 93..1996 2..1905 9520 100 Plus
cryptocephal.o 2133 cryptocephal.o 383..2127 161..1905 8710 99.9 Plus
cryptocephal.o 2133 cryptocephal.o 42..204 2..164 815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21316980..21318023 859..1902 5175 99.7 Plus
chr2L 23010047 chr2L 21316621..21316915 565..859 1475 100 Plus
chr2L 23010047 chr2L 21310250..21310541 165..456 1460 100 Plus
chr2L 23010047 chr2L 21309367..21309529 2..164 815 100 Plus
chr2L 23010047 chr2L 21310593..21310704 455..566 530 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319530 859..1905 5235 100 Plus
2L 23513712 2L 21318125..21318419 565..859 1475 100 Plus
2L 23513712 2L 21311753..21312044 165..456 1460 100 Plus
2L 23513712 2L 21310870..21311032 2..164 815 100 Plus
2L 23513712 2L 21312097..21312208 455..566 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319530 859..1905 5235 100 Plus
2L 23513712 2L 21318125..21318419 565..859 1475 100 Plus
2L 23513712 2L 21311753..21312044 165..456 1460 100 Plus
2L 23513712 2L 21310870..21311032 2..164 815 100 Plus
2L 23513712 2L 21312097..21312208 455..566 560 100 Plus
Blast to na_te.dros performed 2019-03-16 07:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 4724..4827 1887..1793 128 65.4 Minus

RH01327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:33:14 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21310594..21310704 456..566 98 -> Plus
chr2L 21316623..21316915 567..859 100 -> Plus
chr2L 21309366..21309529 1..164 99 -> Plus
chr2L 21310250..21310540 165..455 100 -> Plus
chr2L 21316981..21318023 860..1902 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:53 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 1..1146 287..1432 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:32:25 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 1..1146 287..1432 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:25 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 1..1146 287..1432 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:33:33 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 1..1146 287..1432 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-22 09:10:39 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 16..1917 1..1902 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:32:24 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 16..1917 1..1902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:25 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 4..1905 1..1902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:33:33 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 4..1905 1..1902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:14 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21310869..21311032 1..164 99 -> Plus
2L 21311753..21312043 165..455 100 -> Plus
2L 21312098..21312208 456..566 100 -> Plus
2L 21318127..21318419 567..859 100 -> Plus
2L 21318485..21319527 860..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:14 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21310869..21311032 1..164 99 -> Plus
2L 21311753..21312043 165..455 100 -> Plus
2L 21312098..21312208 456..566 100 -> Plus
2L 21318127..21318419 567..859 100 -> Plus
2L 21318485..21319527 860..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:14 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21310869..21311032 1..164 99 -> Plus
2L 21311753..21312043 165..455 100 -> Plus
2L 21312098..21312208 456..566 100 -> Plus
2L 21318127..21318419 567..859 100 -> Plus
2L 21318485..21319527 860..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:25 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21312098..21312208 456..566 100 -> Plus
arm_2L 21318127..21318419 567..859 100 -> Plus
arm_2L 21310869..21311032 1..164 99 -> Plus
arm_2L 21311753..21312043 165..455 100 -> Plus
arm_2L 21318485..21319527 860..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:16:56 Download gff for RH01327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21318127..21318419 567..859 100 -> Plus
2L 21311753..21312043 165..455 100 -> Plus
2L 21312098..21312208 456..566 100 -> Plus
2L 21318485..21319527 860..1902 100   Plus
2L 21310869..21311032 1..164 99 -> Plus

RH01327.pep Sequence

Translation from 286 to 1431

> RH01327.pep
MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY
DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK
ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN
DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH
AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE
SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP
KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE
NEQLRRTLQERHNEMRYLRQLIREFYHERKR*

RH01327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14324-PA 296 GF14324-PA 1..296 83..381 850 65 Plus
Dana\GF14325-PA 103 GF14325-PA 1..92 1..93 364 74.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21297-PA 292 GG21297-PA 1..292 83..381 1318 87.6 Plus
Dere\GG21296-PA 98 GG21296-PA 1..94 1..93 426 87.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13312-PA 319 GH13312-PA 1..313 83..380 654 53.4 Plus
Dgri\GH13313-PA 111 GH13313-PA 1..91 1..93 218 51.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PE 381 CG8669-PE 1..381 1..381 1968 100 Plus
crc-PA 381 CG8669-PA 1..381 1..381 1968 100 Plus
crc-PF 372 CG8669-PF 1..372 1..381 1902 97.6 Plus
crc-PB 298 CG8669-PB 11..298 94..381 1487 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12209-PA 299 GI12209-PA 1..299 83..381 674 53.4 Plus
Dmoj\GI12198-PA 99 GI12198-PA 12..97 8..97 241 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26659-PA 308 GL26659-PA 1..308 83..381 793 62.4 Plus
Dper\GL26658-PA 114 GL26658-PA 4..95 3..93 329 69.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29007-PA 308 GA29007-PA 1..308 83..381 793 62.4 Plus
Dpse\GA29006-PA 114 GA29006-PA 4..95 3..93 329 69.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23408-PA 363 GM23408-PA 1..363 9..381 1653 85.3 Plus
Dsec\GM16908-PA 259 GM16908-PA 3..259 125..381 1229 91.1 Plus
Dsec\GM19463-PA 121 GM19463-PA 1..119 1..119 583 90.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24317-PA 299 GD24317-PA 1..299 83..381 1403 89.3 Plus
Dsim\GD24316-PA 95 GD24316-PA 1..94 1..94 456 91.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17848-PA 310 GJ17848-PA 5..310 87..381 693 56.6 Plus
Dvir\GJ17847-PA 108 GJ17847-PA 1..87 9..96 245 60.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18737-PA 302 GK18737-PA 1..301 83..380 797 55.3 Plus
Dwil\GK18736-PA 104 GK18736-PA 10..96 8..92 229 56.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12912-PA 381 GE12912-PA 1..381 1..381 1783 87.1 Plus

RH01327.hyp Sequence

Translation from 286 to 1431

> RH01327.hyp
MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY
DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK
ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN
DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH
AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE
SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP
KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE
NEQLRRTLQERHNEMRYLRQLIREFYHERKR*

RH01327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PE 381 CG8669-PE 1..381 1..381 1968 100 Plus
crc-PA 381 CG8669-PA 1..381 1..381 1968 100 Plus
crc-PF 372 CG8669-PF 1..372 1..381 1902 97.6 Plus
crc-PB 298 CG8669-PB 11..298 94..381 1487 100 Plus