BDGP Sequence Production Resources |
Search the DGRC for RH01327
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 13 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | crc-RA |
Protein status: | RH01327.pep: gold |
Sequenced Size: | 1918 |
Gene | Date | Evidence |
---|---|---|
crc | 2009-06-08 | Manual selection by Joe Carlson |
1918 bp assembled on 2009-09-22
GenBank Submission: BT099797.1
> RH01327.complete GATTACCGTTCCAAATGAAACGCAAAAAGGTTCAATTGTTATTTTCTCTC ACGATTTCGGCATTTATATTAACCTAAAGATGGCTCTATAGTTTGCGCGC AAGCAAAAACAAGCAGCACCTAGGTGCCCAAACACAACAAAATGGAAACG TATAAAAATCAAAACGCCATCATGGCATTTTCACAACAACAAAACACACC GCGAAAACAACCATTCTCATTCTTCGGACCGGATTTCATACTCTCAAAAC AAAACATATCTTTGACCCCTGATTTGAACTCTGGATATGGACGCGACATT TCACCAAACCATGGAGAGCTTGCAGTTGCCCAAGGAGCTGTACTGGGACC TCAAGATGGAGCCACAATCCCCAACATCGGTTTTGGGCTCCGATCTGTTT CCGCTCACTGACTCAAACGATACGGAGTGGCTGTATGACGATAACTTTGC AAATGGCATTACTCTTATTGGCGATGATGAAGCCTTGACCCTGGAAGAGG TAGCTTCTCTCCAGTTGCTTAGTGATGAGGAGATGGTTGTGGAGATCTTT GACCTGAAAGATGAAGAATGTCTTTTGGACCAAAAGGCAACGTTGAACTG CATCGATTATGACAGTAACAGCTTTCAGCCGAACATTAATGTTATAACTC AGGCCATAGTACCCGCAAACAAAGTACAATTCGGTGCATCTTCAGACGCT GCTTCGCTTCCTTCTGCCGCTGATTACCAGCTCAATGATGGCCCATCCCT TATTCTACAGCAATTAACGCCGCCGCAGTCTCCGCCTCAATTCGATGCTT ACAAACAGGCGGGCGATGCACAGCCAAAACCCGTGCTCGTAAAGGCCGAG CAAAAGGTGCAATGCTATACTCCTGATGTTACACACGCAGCATCTGCCAC GCCCTTTAACTTTACCAACTGGGTAGGCGGCAGCGAAATTGCCCGAGAGA ACCAACTGGTCGATGATATCGTCAATATGCGTGCTAAGGAGCTCGAATTG TCCACGAACTGGCAGCAGCTCAATGAGGACTGCGAGTCTCAGGCGTCTTC ATCTTTAGACAGCAGAAGCACAGGAAGCGGAGTGTGCAGCAGCATCGCCG ACGCCGACGAGGACTGGGTTCCAGAGCTTATCAGCAGCTCCTCCTCGCCA GCTCCTACAACCATCGAGCAGTCTGCGTCCCAGCCAAAAAAGCGTACTCG CACTTACGGGCGCGGTGTAGAGGATCGAAAGATCAGGAAAAAGGAGCAGA ACAAGAACGCTGCCACACGATATCGCCAGAAAAAGAAACTTGAAATGGAG AATGTGCTGGGCGAGGAGCATGTGCTGTCTAAAGAAAACGAGCAGCTTCG TCGCACTCTGCAGGAGCGGCACAACGAAATGCGCTATCTGCGCCAGCTGA TTCGAGAGTTCTACCATGAACGCAAGCGCTAGGCTTTATTTTCTTTGAAA TCAATTTTATCGTCGTTTGCAAAGTTATTGTTATAGTTAAACCCAAGCCT CTTCCATAAACTAATTGTCATCATAATGTTTCAATGTAATACTATCAATA ACAATCTCCGGGTTGCCCAAAATCTACAAATCACCAAAGTACGCAGCCTG TCCTTTGTCCTACATTTTTGGCACTAATGACGAGTCTCTGAATTCGGAAA TATTTGTTGCCAGTGGGGCCTAAAGGCGACCCCATATCCCAAGCAGCACG GTCCAATGTAAAAACACATTAATTGAAAAGCTCATTGATTTGTTTTTCTG CAAATCGGACAGTGTTGCGGCTGCTGTGCTATTTCAAAAACACTTATATT TTTAATCTGGTAGCATCTCGAAAGATGTAGATTTATTTTAATGTTTCATT ATTTTTTTCATATTCAACATTGATCAGTAATAAATCAAAGGGTTTTTAAA AGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cryptocephal-RA | 2193 | cryptocephal-RA | 93..1996 | 2..1905 | 9520 | 100 | Plus |
cryptocephal.r | 2585 | cryptocephal.r | 93..1996 | 2..1905 | 9520 | 100 | Plus |
cryptocephal.o | 2133 | cryptocephal.o | 383..2127 | 161..1905 | 8710 | 99.9 | Plus |
cryptocephal.o | 2133 | cryptocephal.o | 42..204 | 2..164 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 21316980..21318023 | 859..1902 | 5175 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 21316621..21316915 | 565..859 | 1475 | 100 | Plus |
chr2L | 23010047 | chr2L | 21310250..21310541 | 165..456 | 1460 | 100 | Plus |
chr2L | 23010047 | chr2L | 21309367..21309529 | 2..164 | 815 | 100 | Plus |
chr2L | 23010047 | chr2L | 21310593..21310704 | 455..566 | 530 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21318484..21319530 | 859..1905 | 5235 | 100 | Plus |
2L | 23513712 | 2L | 21318125..21318419 | 565..859 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 21311753..21312044 | 165..456 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 21310870..21311032 | 2..164 | 815 | 100 | Plus |
2L | 23513712 | 2L | 21312097..21312208 | 455..566 | 560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21318484..21319530 | 859..1905 | 5235 | 100 | Plus |
2L | 23513712 | 2L | 21318125..21318419 | 565..859 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 21311753..21312044 | 165..456 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 21310870..21311032 | 2..164 | 815 | 100 | Plus |
2L | 23513712 | 2L | 21312097..21312208 | 455..566 | 560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
micropia | 5461 | micropia DMDM11 5461bp | 4724..4827 | 1887..1793 | 128 | 65.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 21310594..21310704 | 456..566 | 98 | -> | Plus |
chr2L | 21316623..21316915 | 567..859 | 100 | -> | Plus |
chr2L | 21309366..21309529 | 1..164 | 99 | -> | Plus |
chr2L | 21310250..21310540 | 165..455 | 100 | -> | Plus |
chr2L | 21316981..21318023 | 860..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 1..1146 | 287..1432 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 1..1146 | 287..1432 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 1..1146 | 287..1432 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 1..1146 | 287..1432 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 16..1917 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 16..1917 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 4..1905 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
crc-RA | 4..1905 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21310869..21311032 | 1..164 | 99 | -> | Plus |
2L | 21311753..21312043 | 165..455 | 100 | -> | Plus |
2L | 21312098..21312208 | 456..566 | 100 | -> | Plus |
2L | 21318127..21318419 | 567..859 | 100 | -> | Plus |
2L | 21318485..21319527 | 860..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21310869..21311032 | 1..164 | 99 | -> | Plus |
2L | 21311753..21312043 | 165..455 | 100 | -> | Plus |
2L | 21312098..21312208 | 456..566 | 100 | -> | Plus |
2L | 21318127..21318419 | 567..859 | 100 | -> | Plus |
2L | 21318485..21319527 | 860..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21310869..21311032 | 1..164 | 99 | -> | Plus |
2L | 21311753..21312043 | 165..455 | 100 | -> | Plus |
2L | 21312098..21312208 | 456..566 | 100 | -> | Plus |
2L | 21318127..21318419 | 567..859 | 100 | -> | Plus |
2L | 21318485..21319527 | 860..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 21312098..21312208 | 456..566 | 100 | -> | Plus |
arm_2L | 21318127..21318419 | 567..859 | 100 | -> | Plus |
arm_2L | 21310869..21311032 | 1..164 | 99 | -> | Plus |
arm_2L | 21311753..21312043 | 165..455 | 100 | -> | Plus |
arm_2L | 21318485..21319527 | 860..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21318127..21318419 | 567..859 | 100 | -> | Plus |
2L | 21311753..21312043 | 165..455 | 100 | -> | Plus |
2L | 21312098..21312208 | 456..566 | 100 | -> | Plus |
2L | 21318485..21319527 | 860..1902 | 100 | Plus | |
2L | 21310869..21311032 | 1..164 | 99 | -> | Plus |
Translation from 286 to 1431
> RH01327.pep MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE NEQLRRTLQERHNEMRYLRQLIREFYHERKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14324-PA | 296 | GF14324-PA | 1..296 | 83..381 | 850 | 65 | Plus |
Dana\GF14325-PA | 103 | GF14325-PA | 1..92 | 1..93 | 364 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21297-PA | 292 | GG21297-PA | 1..292 | 83..381 | 1318 | 87.6 | Plus |
Dere\GG21296-PA | 98 | GG21296-PA | 1..94 | 1..93 | 426 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13312-PA | 319 | GH13312-PA | 1..313 | 83..380 | 654 | 53.4 | Plus |
Dgri\GH13313-PA | 111 | GH13313-PA | 1..91 | 1..93 | 218 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
crc-PE | 381 | CG8669-PE | 1..381 | 1..381 | 1968 | 100 | Plus |
crc-PA | 381 | CG8669-PA | 1..381 | 1..381 | 1968 | 100 | Plus |
crc-PF | 372 | CG8669-PF | 1..372 | 1..381 | 1902 | 97.6 | Plus |
crc-PB | 298 | CG8669-PB | 11..298 | 94..381 | 1487 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12209-PA | 299 | GI12209-PA | 1..299 | 83..381 | 674 | 53.4 | Plus |
Dmoj\GI12198-PA | 99 | GI12198-PA | 12..97 | 8..97 | 241 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26659-PA | 308 | GL26659-PA | 1..308 | 83..381 | 793 | 62.4 | Plus |
Dper\GL26658-PA | 114 | GL26658-PA | 4..95 | 3..93 | 329 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29007-PA | 308 | GA29007-PA | 1..308 | 83..381 | 793 | 62.4 | Plus |
Dpse\GA29006-PA | 114 | GA29006-PA | 4..95 | 3..93 | 329 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23408-PA | 363 | GM23408-PA | 1..363 | 9..381 | 1653 | 85.3 | Plus |
Dsec\GM16908-PA | 259 | GM16908-PA | 3..259 | 125..381 | 1229 | 91.1 | Plus |
Dsec\GM19463-PA | 121 | GM19463-PA | 1..119 | 1..119 | 583 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24317-PA | 299 | GD24317-PA | 1..299 | 83..381 | 1403 | 89.3 | Plus |
Dsim\GD24316-PA | 95 | GD24316-PA | 1..94 | 1..94 | 456 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17848-PA | 310 | GJ17848-PA | 5..310 | 87..381 | 693 | 56.6 | Plus |
Dvir\GJ17847-PA | 108 | GJ17847-PA | 1..87 | 9..96 | 245 | 60.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18737-PA | 302 | GK18737-PA | 1..301 | 83..380 | 797 | 55.3 | Plus |
Dwil\GK18736-PA | 104 | GK18736-PA | 10..96 | 8..92 | 229 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12912-PA | 381 | GE12912-PA | 1..381 | 1..381 | 1783 | 87.1 | Plus |
Translation from 286 to 1431
> RH01327.hyp MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE NEQLRRTLQERHNEMRYLRQLIREFYHERKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
crc-PE | 381 | CG8669-PE | 1..381 | 1..381 | 1968 | 100 | Plus |
crc-PA | 381 | CG8669-PA | 1..381 | 1..381 | 1968 | 100 | Plus |
crc-PF | 372 | CG8669-PF | 1..372 | 1..381 | 1902 | 97.6 | Plus |
crc-PB | 298 | CG8669-PB | 11..298 | 94..381 | 1487 | 100 | Plus |