Clone RH01588 Report

Search the DGRC for RH01588

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:15
Well:88
Vector:pFlc-1
Associated Gene/TranscriptCG18467-RA
Protein status:RH01588.pep: gold
Preliminary Size:672
Sequenced Size:1170

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18467 2001-12-13 Blastp of sequenced clone
CG18467 2002-01-01 Sim4 clustering to Release 2
CG18467 2003-01-01 Sim4 clustering to Release 3
CG18467 2008-04-29 Release 5.5 accounting
CG18467 2008-08-15 Release 5.9 accounting
CG18467 2008-12-18 5.12 accounting

Clone Sequence Records

RH01588.complete Sequence

1170 bp (1170 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070634

> RH01588.complete
GAGTGTTCCAGCAGGCGCCAAAGGCAGCGCTCGCAACGCGGCCATTTTTG
GTCCAATTGGTTTGGATTAAGCCGATTGTTGCCAAAAAGAAAATAGAAGA
AAAACTGCAGCTAGCCATCGCTAGCCATCCAAAACAATACATACAACAGA
CAGGTGAAATTTTTGCAACAATCTTTGATTGACAACGAAAGCAGCAACAA
AAACAACAACAGTACGTAAATCAAACTATAAAAATTGAGAATGGCCGAGT
ATAGACCATCCACTTCGTGGCCCCATCGGATGATGAGCTTCCAGTGCCGG
CAGGCGGACCTGAATCGCCTGGTGATGAACTATCTGGTTACAGAGGGATA
TCAAGAGGCCGCCAAGCGTTTCATGACCGAGGCGTCTGTGAAGCCGGGTC
CACACATGGACACCATCGGGGATCGTTTAAGGATTCAGGATGCCGTGCGT
GTGGGTCAGGTCAAGTACGCCATGGACCTGGCCACACGGATCTATCCACG
GCTCTTCGAGACCGACAACTATGTATTTTTTCACATGCAACAGTTGCGCC
TGATCGAGATGATCAGGGATCAGAAGATGGAGAAGGCCTTGAAGTTTGCC
CAGAGCAAGGCAGCGGGCTTTTCCAAGGTCGATCCAAGTCACTACCACGA
AGTGGAGCGGACCATGGGTCTGCTGGCCTTCGATCGGCCGGAATACAGTC
CCTACGGGGAGCTGATGTACTACTCATATCGCCAAAAGGTGGCCGGTGAA
ATGAATGCAGCCATGTTACGCTGCCACGAGGATGAGAGTAAGAGCAAAGA
GGAGCCCATGGAGCCAAGAATGATGTTCCTCATCAAGCTAATCCTTTGGG
CCCAGGCCAAGCTGGATCGCGAGGGATTCACCGACTACCACAAGCTTGAT
CTTGGCCACGCGGATTTCGAGGAAGAGTTCCGCCGGAGTTTCCAGGGTTT
CTAAGTCCATAAGCATACAATAATTGTCCAACGATTGTCGGTCGGCGTCT
ACTGCGAAACTTTTTAAATGTACGTTGATTTTTTTTTTTTAGCAAATCTA
CATATATAAATGTATTTTTTTTTGTGGTGAACCAACATAAATAAGTGTAA
TTTTTTTTGATGGATGTTGAATATTAAATATTTCCATGTCTTGATGTAAA
TTGGAAAAAAAAAAAAAAAA

RH01588.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467.c 1679 CG18467.c 521..1674 2..1155 5755 99.9 Plus
CG18467-RA 1185 CG18467-RA 27..1180 2..1155 5755 99.9 Plus
CG18467.b 1676 CG18467.b 521..1671 2..1155 5685 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13328741..13329552 342..1154 3880 99.3 Plus
chr2R 21145070 chr2R 13327671..13327818 2..150 680 98.7 Plus
chr2R 21145070 chr2R 13328554..13328687 210..343 655 99.3 Plus
chr2R 21145070 chr2R 13327878..13327939 151..212 310 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17441671..17442484 342..1155 4070 100 Plus
2R 25286936 2R 17440606..17440754 2..150 745 100 Plus
2R 25286936 2R 17441484..17441617 210..343 655 99.3 Plus
2R 25286936 2R 17440814..17440875 151..212 310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17442870..17443683 342..1155 4070 100 Plus
2R 25260384 2R 17441805..17441953 2..150 745 100 Plus
2R 25260384 2R 17442683..17442816 210..343 655 99.2 Plus
2R 25260384 2R 17442013..17442074 151..212 310 100 Plus
Blast to na_te.dros performed 2019-03-16 14:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1496..1626 1138..1014 134 62.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1561..1607 190..236 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5651..5716 182..243 122 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2739..2831 121..212 121 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2350 183..214 115 84.4 Plus

RH01588.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:18:09 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13327669..13327818 1..150 98 -> Plus
chr2R 13327878..13327939 151..212 100 -> Plus
chr2R 13328557..13328687 213..343 99 -> Plus
chr2R 13328743..13329552 344..1154 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:07 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 241..954 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:31 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 241..954 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:38:21 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 241..954 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:40:38 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 241..954 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:30 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 241..954 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:20 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..1155 1..1154 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:31 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..1155 1..1154 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:38:21 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 308..1462 1..1154 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:40:38 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..1155 1..1154 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:30 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 308..1462 1..1154 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:09 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17441673..17442483 344..1154 100   Plus
2R 17440604..17440754 1..150 99 -> Plus
2R 17440814..17440875 151..212 100 -> Plus
2R 17441487..17441617 213..343 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:09 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17441673..17442483 344..1154 100   Plus
2R 17440604..17440754 1..150 99 -> Plus
2R 17440814..17440875 151..212 100 -> Plus
2R 17441487..17441617 213..343 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:09 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17441673..17442483 344..1154 100   Plus
2R 17440604..17440754 1..150 99 -> Plus
2R 17440814..17440875 151..212 100 -> Plus
2R 17441487..17441617 213..343 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:38:21 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13328109..13328259 1..150 99 -> Plus
arm_2R 13328319..13328380 151..212 100 -> Plus
arm_2R 13328992..13329122 213..343 99 -> Plus
arm_2R 13329178..13329988 344..1154 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:35 Download gff for RH01588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17442872..17443682 344..1154 100   Plus
2R 17441803..17441953 1..150 99 -> Plus
2R 17442013..17442074 151..212 100 -> Plus
2R 17442686..17442816 213..343 99 -> Plus

RH01588.pep Sequence

Translation from 240 to 953

> RH01588.pep
MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV
KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ
QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP
EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL
ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGF*

RH01588.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13121-PA 197 GF13121-PA 1..197 1..237 656 57.7 Plus
Dana\GF22403-PA 225 GF22403-PA 15..223 10..225 523 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20679-PA 237 GG20679-PA 1..237 1..237 1243 96.6 Plus
Dere\GG18105-PA 225 GG18105-PA 15..210 10..214 527 46.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12808-PA 225 GH12808-PA 15..223 10..227 516 45.9 Plus
Dgri\GH21398-PA 216 GH21398-PA 1..212 1..235 423 41.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-PA 237 CG18467-PA 1..237 1..237 1251 100 Plus
CG6617-PA 225 CG6617-PA 15..205 10..209 504 48 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15079-PA 225 GI15079-PA 15..223 10..227 525 47 Plus
Dmoj\GI18577-PA 202 GI18577-PA 1..201 1..236 398 39.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11425-PA 231 GL11425-PA 1..229 1..235 753 59.1 Plus
Dper\GL27019-PA 225 GL27019-PA 15..210 10..214 526 47.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14944-PA 231 GA14944-PA 1..229 1..235 753 59.1 Plus
Dpse\GA19727-PA 225 GA19727-PA 15..210 10..214 526 47.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21774-PA 237 GM21774-PA 1..237 1..237 1239 96.6 Plus
Dsec\GM23079-PA 237 GM23079-PA 1..237 1..237 1239 96.6 Plus
Dsec\GM16180-PA 217 GM16180-PA 1..217 1..237 1109 88.2 Plus
Dsec\GM10398-PA 182 GM10398-PA 1..182 56..237 937 96.2 Plus
Dsec\GM22795-PA 225 GM22795-PA 15..210 10..214 528 46.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11267-PA 237 GD11267-PA 1..237 1..237 1259 98.3 Plus
Dsim\GD24473-PA 225 GD24473-PA 15..210 10..214 528 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18886-PA 225 GJ18886-PA 15..223 10..227 520 45.9 Plus
Dvir\GJ20371-PA 211 GJ20371-PA 9..210 8..236 483 43 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10189-PA 225 GK10189-PA 15..223 10..227 519 46.1 Plus
Dwil\GK22898-PA 212 GK22898-PA 1..212 1..234 427 39.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11662-PA 238 GE11662-PA 1..238 1..237 1228 96.2 Plus
Dyak\GE15506-PA 225 GE15506-PA 15..210 10..214 527 46.8 Plus

RH01588.hyp Sequence

Translation from 240 to 953

> RH01588.hyp
MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV
KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ
QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP
EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL
ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGF*

RH01588.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-PA 237 CG18467-PA 1..237 1..237 1251 100 Plus
CG6617-PA 225 CG6617-PA 15..205 10..209 504 48 Plus