BDGP Sequence Production Resources |
Search the DGRC for RH01588
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 15 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18467-RA |
Protein status: | RH01588.pep: gold |
Preliminary Size: | 672 |
Sequenced Size: | 1170 |
Gene | Date | Evidence |
---|---|---|
CG18467 | 2001-12-13 | Blastp of sequenced clone |
CG18467 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18467 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18467 | 2008-04-29 | Release 5.5 accounting |
CG18467 | 2008-08-15 | Release 5.9 accounting |
CG18467 | 2008-12-18 | 5.12 accounting |
1170 bp (1170 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070634
> RH01588.complete GAGTGTTCCAGCAGGCGCCAAAGGCAGCGCTCGCAACGCGGCCATTTTTG GTCCAATTGGTTTGGATTAAGCCGATTGTTGCCAAAAAGAAAATAGAAGA AAAACTGCAGCTAGCCATCGCTAGCCATCCAAAACAATACATACAACAGA CAGGTGAAATTTTTGCAACAATCTTTGATTGACAACGAAAGCAGCAACAA AAACAACAACAGTACGTAAATCAAACTATAAAAATTGAGAATGGCCGAGT ATAGACCATCCACTTCGTGGCCCCATCGGATGATGAGCTTCCAGTGCCGG CAGGCGGACCTGAATCGCCTGGTGATGAACTATCTGGTTACAGAGGGATA TCAAGAGGCCGCCAAGCGTTTCATGACCGAGGCGTCTGTGAAGCCGGGTC CACACATGGACACCATCGGGGATCGTTTAAGGATTCAGGATGCCGTGCGT GTGGGTCAGGTCAAGTACGCCATGGACCTGGCCACACGGATCTATCCACG GCTCTTCGAGACCGACAACTATGTATTTTTTCACATGCAACAGTTGCGCC TGATCGAGATGATCAGGGATCAGAAGATGGAGAAGGCCTTGAAGTTTGCC CAGAGCAAGGCAGCGGGCTTTTCCAAGGTCGATCCAAGTCACTACCACGA AGTGGAGCGGACCATGGGTCTGCTGGCCTTCGATCGGCCGGAATACAGTC CCTACGGGGAGCTGATGTACTACTCATATCGCCAAAAGGTGGCCGGTGAA ATGAATGCAGCCATGTTACGCTGCCACGAGGATGAGAGTAAGAGCAAAGA GGAGCCCATGGAGCCAAGAATGATGTTCCTCATCAAGCTAATCCTTTGGG CCCAGGCCAAGCTGGATCGCGAGGGATTCACCGACTACCACAAGCTTGAT CTTGGCCACGCGGATTTCGAGGAAGAGTTCCGCCGGAGTTTCCAGGGTTT CTAAGTCCATAAGCATACAATAATTGTCCAACGATTGTCGGTCGGCGTCT ACTGCGAAACTTTTTAAATGTACGTTGATTTTTTTTTTTTAGCAAATCTA CATATATAAATGTATTTTTTTTTGTGGTGAACCAACATAAATAAGTGTAA TTTTTTTTGATGGATGTTGAATATTAAATATTTCCATGTCTTGATGTAAA TTGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13328741..13329552 | 342..1154 | 3880 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 13327671..13327818 | 2..150 | 680 | 98.7 | Plus |
chr2R | 21145070 | chr2R | 13328554..13328687 | 210..343 | 655 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 13327878..13327939 | 151..212 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17441671..17442484 | 342..1155 | 4070 | 100 | Plus |
2R | 25286936 | 2R | 17440606..17440754 | 2..150 | 745 | 100 | Plus |
2R | 25286936 | 2R | 17441484..17441617 | 210..343 | 655 | 99.3 | Plus |
2R | 25286936 | 2R | 17440814..17440875 | 151..212 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17442870..17443683 | 342..1155 | 4070 | 100 | Plus |
2R | 25260384 | 2R | 17441805..17441953 | 2..150 | 745 | 100 | Plus |
2R | 25260384 | 2R | 17442683..17442816 | 210..343 | 655 | 99.2 | Plus |
2R | 25260384 | 2R | 17442013..17442074 | 151..212 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1496..1626 | 1138..1014 | 134 | 62.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1561..1607 | 190..236 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5651..5716 | 182..243 | 122 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2831 | 121..212 | 121 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2350 | 183..214 | 115 | 84.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13327669..13327818 | 1..150 | 98 | -> | Plus |
chr2R | 13327878..13327939 | 151..212 | 100 | -> | Plus |
chr2R | 13328557..13328687 | 213..343 | 99 | -> | Plus |
chr2R | 13328743..13329552 | 344..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..714 | 241..954 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..714 | 241..954 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..714 | 241..954 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..714 | 241..954 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..714 | 241..954 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..1155 | 1..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..1155 | 1..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 308..1462 | 1..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 1..1155 | 1..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18467-RA | 308..1462 | 1..1154 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17441673..17442483 | 344..1154 | 100 | Plus | |
2R | 17440604..17440754 | 1..150 | 99 | -> | Plus |
2R | 17440814..17440875 | 151..212 | 100 | -> | Plus |
2R | 17441487..17441617 | 213..343 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17441673..17442483 | 344..1154 | 100 | Plus | |
2R | 17440604..17440754 | 1..150 | 99 | -> | Plus |
2R | 17440814..17440875 | 151..212 | 100 | -> | Plus |
2R | 17441487..17441617 | 213..343 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17441673..17442483 | 344..1154 | 100 | Plus | |
2R | 17440604..17440754 | 1..150 | 99 | -> | Plus |
2R | 17440814..17440875 | 151..212 | 100 | -> | Plus |
2R | 17441487..17441617 | 213..343 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13328109..13328259 | 1..150 | 99 | -> | Plus |
arm_2R | 13328319..13328380 | 151..212 | 100 | -> | Plus |
arm_2R | 13328992..13329122 | 213..343 | 99 | -> | Plus |
arm_2R | 13329178..13329988 | 344..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17442872..17443682 | 344..1154 | 100 | Plus | |
2R | 17441803..17441953 | 1..150 | 99 | -> | Plus |
2R | 17442013..17442074 | 151..212 | 100 | -> | Plus |
2R | 17442686..17442816 | 213..343 | 99 | -> | Plus |
Translation from 240 to 953
> RH01588.pep MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13121-PA | 197 | GF13121-PA | 1..197 | 1..237 | 656 | 57.7 | Plus |
Dana\GF22403-PA | 225 | GF22403-PA | 15..223 | 10..225 | 523 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20679-PA | 237 | GG20679-PA | 1..237 | 1..237 | 1243 | 96.6 | Plus |
Dere\GG18105-PA | 225 | GG18105-PA | 15..210 | 10..214 | 527 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12808-PA | 225 | GH12808-PA | 15..223 | 10..227 | 516 | 45.9 | Plus |
Dgri\GH21398-PA | 216 | GH21398-PA | 1..212 | 1..235 | 423 | 41.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18467-PA | 237 | CG18467-PA | 1..237 | 1..237 | 1251 | 100 | Plus |
CG6617-PA | 225 | CG6617-PA | 15..205 | 10..209 | 504 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15079-PA | 225 | GI15079-PA | 15..223 | 10..227 | 525 | 47 | Plus |
Dmoj\GI18577-PA | 202 | GI18577-PA | 1..201 | 1..236 | 398 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11425-PA | 231 | GL11425-PA | 1..229 | 1..235 | 753 | 59.1 | Plus |
Dper\GL27019-PA | 225 | GL27019-PA | 15..210 | 10..214 | 526 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14944-PA | 231 | GA14944-PA | 1..229 | 1..235 | 753 | 59.1 | Plus |
Dpse\GA19727-PA | 225 | GA19727-PA | 15..210 | 10..214 | 526 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21774-PA | 237 | GM21774-PA | 1..237 | 1..237 | 1239 | 96.6 | Plus |
Dsec\GM23079-PA | 237 | GM23079-PA | 1..237 | 1..237 | 1239 | 96.6 | Plus |
Dsec\GM16180-PA | 217 | GM16180-PA | 1..217 | 1..237 | 1109 | 88.2 | Plus |
Dsec\GM10398-PA | 182 | GM10398-PA | 1..182 | 56..237 | 937 | 96.2 | Plus |
Dsec\GM22795-PA | 225 | GM22795-PA | 15..210 | 10..214 | 528 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11267-PA | 237 | GD11267-PA | 1..237 | 1..237 | 1259 | 98.3 | Plus |
Dsim\GD24473-PA | 225 | GD24473-PA | 15..210 | 10..214 | 528 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18886-PA | 225 | GJ18886-PA | 15..223 | 10..227 | 520 | 45.9 | Plus |
Dvir\GJ20371-PA | 211 | GJ20371-PA | 9..210 | 8..236 | 483 | 43 | Plus |
Translation from 240 to 953
> RH01588.hyp MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGF*