BDGP Sequence Production Resources |
Search the DGRC for RH01814
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 18 |
Well: | 14 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL18-RA |
Protein status: | RH01814.pep: gold |
Preliminary Size: | 703 |
Sequenced Size: | 737 |
Gene | Date | Evidence |
---|---|---|
CG8615 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8615 | 2002-04-21 | Blastp of sequenced clone |
CG8615 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL18 | 2008-04-29 | Release 5.5 accounting |
RpL18 | 2008-08-15 | Release 5.9 accounting |
RpL18 | 2008-12-18 | 5.12 accounting |
737 bp (737 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113554
> RH01814.complete TTGCTTTCTTTTGGCTTTCGTTTCCGGCGAGCGTTGATTAATACATTCAA CAGAAGAAATGGGTATTGATATCAACCACAAGTACGATCGCAAGGTTCGC AGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTGGTCAAGCT GTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCGCATCATCC TGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTATCGCTTCAG CGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCTACCATCGT GGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGTGCCCAAGC TCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGCGCATCCTG AAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTCCGATCGCC CACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGCCCGCACCG CCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGCACACCCGC CCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGTGGTCGTCG CTCCAGCTGCGGCTACAAGAAGTAAGCGACTGGCTGACTGGACTGGATTC GGCATCCTTTTGGTTAAGATAATGATTTTTCTCGCCATCGCACGGCAATA AAAGAGTTTTATTCCAAAAGGCGAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7233294..7233879 | 732..147 | 2900 | 99.6 | Minus |
3L | 28103327 | 3L | 7233955..7234042 | 148..61 | 440 | 100 | Minus |
3L | 28103327 | 3L | 7234325..7234357 | 62..30 | 165 | 100 | Minus |
3L | 28103327 | 3L | 7234420..7234447 | 31..4 | 140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7232363..7232937 | 149..723 | 99 | <- | Minus |
chr3L | 7233015..7233101 | 62..148 | 100 | <- | Minus |
chr3L | 7233386..7233415 | 32..61 | 100 | <- | Minus |
chr3L | 7233480..7233509 | 1..31 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..567 | 59..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..567 | 59..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..567 | 59..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..567 | 59..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..567 | 59..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..722 | 2..723 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..722 | 2..723 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 2..724 | 1..723 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 1..722 | 2..723 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL18-RA | 2..724 | 1..723 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7240203..7240777 | 149..723 | 99 | <- | Minus |
3L | 7240855..7240941 | 62..148 | 100 | <- | Minus |
3L | 7241226..7241255 | 32..61 | 100 | <- | Minus |
3L | 7241320..7241349 | 1..31 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7240203..7240777 | 149..723 | 99 | <- | Minus |
3L | 7240855..7240941 | 62..148 | 100 | <- | Minus |
3L | 7241226..7241255 | 32..61 | 100 | <- | Minus |
3L | 7241320..7241349 | 1..31 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7240203..7240777 | 149..723 | 99 | <- | Minus |
3L | 7240855..7240941 | 62..148 | 100 | <- | Minus |
3L | 7241226..7241255 | 32..61 | 100 | <- | Minus |
3L | 7241320..7241349 | 1..31 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7233303..7233877 | 149..723 | 99 | <- | Minus |
arm_3L | 7233955..7234041 | 62..148 | 100 | <- | Minus |
arm_3L | 7234326..7234355 | 32..61 | 100 | <- | Minus |
arm_3L | 7234420..7234449 | 1..31 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7233303..7233877 | 149..723 | 99 | <- | Minus |
3L | 7233955..7234041 | 62..148 | 100 | <- | Minus |
3L | 7234326..7234355 | 32..61 | 100 | <- | Minus |
3L | 7234420..7234449 | 1..31 | 96 | Minus |
Translation from 58 to 624
> RH01814.pep MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24783-PA | 188 | GF24783-PA | 1..188 | 1..188 | 969 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14989-PA | 188 | GG14989-PA | 1..188 | 1..188 | 972 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15152-PA | 190 | GH15152-PA | 3..190 | 1..188 | 896 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL18-PB | 188 | CG8615-PB | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PC | 188 | CG8615-PC | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PA | 188 | CG8615-PA | 1..188 | 1..188 | 963 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12089-PA | 189 | GI12089-PA | 2..189 | 1..188 | 900 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24902-PA | 189 | GL24902-PA | 3..189 | 2..188 | 966 | 97.9 | Plus |
Dper\GL13213-PA | 187 | GL13213-PA | 1..187 | 1..188 | 878 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21210-PA | 189 | GA21210-PA | 3..189 | 2..188 | 966 | 97.9 | Plus |
Dpse\GA27760-PA | 135 | GA27760-PA | 1..135 | 53..188 | 611 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13785-PA | 188 | GM13785-PA | 1..188 | 1..188 | 977 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13082-PA | 169 | GD13082-PA | 1..169 | 1..188 | 792 | 85.1 | Plus |
Dsim\GD15528-PA | 86 | GD15528-PA | 20..86 | 108..174 | 208 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13360-PA | 188 | GJ13360-PA | 1..188 | 1..188 | 960 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13159-PA | 188 | GK13159-PA | 1..188 | 1..188 | 958 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20435-PA | 188 | GE20435-PA | 1..188 | 1..188 | 976 | 98.9 | Plus |
Translation from 58 to 624
> RH01814.hyp MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKK*