Clone RH02365 Report

Search the DGRC for RH02365

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:23
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCcz1-RB
Protein status:RH02365.pep: gold
Preliminary Size:1392
Sequenced Size:1547

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14980 2001-12-17 Blastp of sequenced clone
CG14980 2002-01-01 Sim4 clustering to Release 2
CG14980 2003-01-01 Sim4 clustering to Release 3
CG14980 2008-04-29 Release 5.5 accounting
CG14980 2008-08-15 Release 5.9 accounting
CG14980 2008-12-18 5.12 accounting

Clone Sequence Records

RH02365.complete Sequence

1547 bp (1547 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071668

> RH02365.complete
GACCTTTTCATTATTTACCTTTGGCCAAAATAAATACTTTTAATTCTGTG
CGGAAAGAAATGGCTAAATTATTGCAACGCGTAGAAATTACGTTACGCAG
CTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAGGAACACA
AGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATACGAAAATC
AAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAACTTTTAC
ATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACACAACTCT
TCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAATGTTCCC
AAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATCGGGGTGC
CGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGCTATCAAA
TGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGAAGAACCT
AATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCCAGTTCTA
TGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGATATCATCG
ATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCTCTTCTTG
CGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACATCAAGGA
GAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAACTTAGCC
CGGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGTGCTGAAA
GTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAAAGCGAAG
CATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAGAAGGTCG
CAGGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAATGAAGGTC
TATGTGACACTGGACAAGGAGGCCAAACCCTACTACTTGCTCATCTACCG
CGCTTTGCACATAACTCTGTGTCTGTTTCTGAATGCTGACCAGGTTGCGC
CGAAACAAGATCTCTACGACGATCTCCATGCCTACATGGCTCCCCAACTG
ACTTCGTTGGCCCGGGACATATCCAGCGAGTTGACAAAGGAGGCGGTGGG
TGCTGCAGGCCAGGACAACTCCAGCGGGAACAGCGAAACGGCGCCGAAGT
ACTTGTTCATTAACGAACAAAGCCTGCAGCACCACACGAACTTTCAGAGG
CACCTGCCCCAAGGGCTGCCCCGCAATGTGCTTAGTATCATTGCGGACTT
GGCCAATGGCAGTGGCAAGGCGGAAATGGAGAGTGCTCCTGCCGAGGAAG
TTCAGGTCAAGACCACCAATGACTATTGGATTGTGAAGCGGCGCTGTAAC
TACAGGCAGTACTATGTGATCCTGTGCAATAGCAAGGCCACCTTGCTGGA
CGTCACCCAGGAAGCGAGGCGCATTTTCGAGCAAGAGCTCACAGATGATG
TATTTTTTGACAAATAAAGAGGAGGATTAGGTAAAAAAAAAAAAAAA

RH02365.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14980-RB 1579 CG14980-RB 24..1557 2..1535 7670 100 Plus
CG14980.a 1522 CG14980.a 231..1522 241..1532 6460 100 Plus
CG14980.a 1522 CG14980.a 1..231 2..232 1155 100 Plus
CG14977-RA 599 CG14977-RA 511..599 1535..1447 445 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3897459..3898253 1035..241 3930 99.6 Minus
chr3L 24539361 chr3L 3896899..3897394 1532..1037 2405 99 Minus
chr3L 24539361 chr3L 3898469..3898608 144..5 685 99.3 Minus
chr3L 24539361 chr3L 3898317..3898416 241..142 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:17:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3898004..3898798 1035..241 3975 100 Minus
3L 28110227 3L 3897441..3897941 1535..1035 2505 100 Minus
3L 28110227 3L 3899014..3899156 144..2 715 100 Minus
3L 28110227 3L 3898862..3898961 241..142 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3898004..3898798 1035..241 3975 100 Minus
3L 28103327 3L 3897441..3897941 1535..1035 2505 100 Minus
3L 28103327 3L 3899014..3899156 144..2 715 100 Minus
3L 28103327 3L 3898862..3898961 241..142 500 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:31:46 has no hits.

RH02365.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:32:28 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3896899..3897395 1036..1532 98 <- Minus
chr3L 3897459..3898252 242..1035 99 <- Minus
chr3L 3898317..3898414 144..241 100 <- Minus
chr3L 3898470..3898611 1..143 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:22 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1458 60..1517 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:55 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1458 60..1517 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:33:14 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 1..1458 60..1517 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:35 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1458 60..1517 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:01:35 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 1..1458 60..1517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:39 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1531 2..1532 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:55 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1531 2..1532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:33:14 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 1..1531 2..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:35 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1531 2..1532 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:01:35 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 1..1531 2..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:32:28 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3898004..3898797 242..1035 100 <- Minus
3L 3898862..3898959 144..241 100 <- Minus
3L 3899015..3899156 1..143 99   Minus
3L 3897444..3897940 1036..1532 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:32:28 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3898004..3898797 242..1035 100 <- Minus
3L 3898862..3898959 144..241 100 <- Minus
3L 3899015..3899156 1..143 99   Minus
3L 3897444..3897940 1036..1532 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:32:28 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3898004..3898797 242..1035 100 <- Minus
3L 3898862..3898959 144..241 100 <- Minus
3L 3899015..3899156 1..143 99   Minus
3L 3897444..3897940 1036..1532 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:33:14 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3897444..3897940 1036..1532 100 <- Minus
arm_3L 3898004..3898797 242..1035 100 <- Minus
arm_3L 3898862..3898959 144..241 100 <- Minus
arm_3L 3899015..3899156 1..143 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:54 Download gff for RH02365.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3897444..3897940 1036..1532 100 <- Minus
3L 3898004..3898797 242..1035 100 <- Minus
3L 3898862..3898959 144..241 100 <- Minus
3L 3899015..3899156 1..143 99   Minus

RH02365.hyp Sequence

Translation from 2 to 1516

> RH02365.hyp
PFHYLPLAKINTFNSVRKEMAKLLQRVEITLRSFYIFNSTFGQVEGEEHK
KVLFYHPNDIELNTKIKDVGLSEAIIRFTGTFTSEDDCQALHTQKTTQLF
YQPEPGYWLVLVLNVPKEVRLKEGVEVADYRGAEISDRIYRAILRQCYQM
FRFQNGCFSSCGSEEPNPDKRRELLCQKLLQFYDQHLTNLRDPAQCDIID
MLHSIQYLPLDKTLFLRAQNFGTLCETFPDIKESIMLYQEQVLCGGKLSP
EDLHCVHSYVVQHVLKVEASSSTIAVSPSLKRSISECQVGGFVRSRQKVA
GDEHDAVNEEDHPMKVYVTLDKEAKPYYLLIYRALHITLCLFLNADQVAP
KQDLYDDLHAYMAPQLTSLARDISSELTKEAVGAAGQDNSSGNSETAPKY
LFINEQSLQHHTNFQRHLPQGLPRNVLSIIADLANGSGKAEMESAPAEEV
QVKTTNDYWIVKRRCNYRQYYVILCNSKATLLDVTQEARRIFEQELTDDV
FFDK*

RH02365.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-PB 485 CG14980-PB 1..485 20..504 2536 100 Plus

RH02365.pep Sequence

Translation from 59 to 1516

> RH02365.pep
MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDV
GLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEV
RLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPD
KRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQ
NFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEA
SSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVT
LDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSL
ARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLP
QGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQ
YYVILCNSKATLLDVTQEARRIFEQELTDDVFFDK*

RH02365.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10255-PA 480 GF10255-PA 1..480 1..485 1931 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14242-PA 485 GG14242-PA 1..485 1..485 2399 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15715-PA 461 GH15715-PA 1..461 1..485 1443 57.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-PB 485 CG14980-PB 1..485 1..485 2536 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14273-PA 453 GI14273-PA 1..453 1..485 1514 61.2 Plus
Dmoj\GI12771-PA 453 GI12771-PA 1..453 1..485 1508 61.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16205-PA 482 GL16205-PA 1..482 1..485 1850 70.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13401-PA 482 GA13401-PA 1..482 1..485 1851 70.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14033-PA 485 GM14033-PA 1..485 1..485 2525 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17601-PA 485 GD17601-PA 1..485 1..485 2541 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16069-PA 460 GJ16069-PA 1..460 1..485 1575 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20492-PA 477 GK20492-PA 1..477 1..485 1577 63.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20669-PA 485 GE20669-PA 1..485 1..485 2447 93 Plus