Clone RH02374 Report

Search the DGRC for RH02374

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:23
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG17778-RA
Protein status:RH02374.pep: gold
Sequenced Size:1134

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17778 2002-01-01 Sim4 clustering to Release 2
CG17778 2002-04-26 Blastp of sequenced clone
CG17778 2003-01-01 Sim4 clustering to Release 3
CG17778 2008-04-29 Release 5.5 accounting
CG17778 2008-08-15 Release 5.9 accounting
CG17778 2008-12-18 5.12 accounting

Clone Sequence Records

RH02374.complete Sequence

1134 bp (1134 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113555

> RH02374.complete
GACTCTGCTCGGAGAGCTTGGACTGGACTGTCAGCGCTCCGGACGACGCG
CCTTAAGTTAGGCAAAAACAATTTTGTTATTTGCCGCAGTATGGACTTGC
TGCGCTGACTTACTACTTACTGTCATGCCAAGAGGCTGAGGTCGAGAGGC
AGCTTGGGATCTGGAAAAGATGGAGGCCACGCCGGGCTACCAGGACATCA
GCGCTCTGGAAAAATCGGTGGCCAATGCAGGATCGCAGCTGTACACGATG
GCCCACAAACTGCACGCGGTGGAGCGCAGCCTCGAACAGACGACGATGGA
GCAGATGGACGAGATGGAGGTCCTCGAGTTGCTCGAGTCGATGAGCGAGG
TGACCAACGAGTACCAGAATCTGCGCAAGGACATTCGCGAGGTGCAGCAG
TTGCAGCGTGACGTCAGCAGCTCCATACGGTACCAAATGCGCAGCATGCA
GCAGACTTTTCACACTCTAAAACAGCGGATAGCTAGCTCCCAGAAGGGTC
GCAAAAAGCCCGAGAAAGGGCTCGATGGAGCAGGGGTTGGTATTCATGAA
TAATCAATGACCCTATTGATTGGCCTCCCTGGCGAATAGGTGCGGTAAAT
GTGTCAATGGGGACGCAAATGTAGGGACTAAATTGGCACCAATCTGAAGC
AATCAACTGTGTAACTATATATCGCAAGCCCACTCCAAGCATTTAGACTC
GGAAAAAAATCCTATACTTTATATACATGTATACACATTAAGAAAACCAC
ACCCATTGTATGCGAATTAAGGTTTTTTTTTGGTGTTTTATTCCAGTGAT
AGGCAGGAATAACGAAAACTCACTGCTCTAAGAACACAAAAACACAATGC
TTAACACAGAGTAAACAACATTTACGATGATATGCGTTCTTTAGGACGAA
CCGGAATGTCTGAATGCACTTTTCCAAATTTTGCCTTAACATAATAGTAT
TTTGAGGTAGTTTTTGATACGACACGTTTTAAAAGATAATATATAACAGA
CCGTACATATTTAGGCCACACACAATGGTTATTCTTGTGTTAGTTTCATT
TTTGGAGATTTATTTGTTGAGCTCTAGAGAAAATAAAAGTTAGTTAAACC
TCGGGAGACGAGGAACGCAAAAAAAAAAAAAAAA

RH02374.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-RA 1299 CG17778-RA 183..1299 2..1118 5585 100 Plus
CG17778.a 1120 CG17778.a 232..1120 230..1118 4445 100 Plus
CG17778.a 1120 CG17778.a 17..233 2..218 1085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 389501..390402 217..1118 4510 100 Plus
chrX 22417052 chrX 388935..389153 2..220 1095 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 495468..496370 217..1119 4515 100 Plus
X 23542271 X 494902..495120 2..220 1095 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 503566..504468 217..1119 4515 100 Plus
X 23527363 X 503000..503218 2..220 1095 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:15:14 has no hits.

RH02374.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:15:56 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 388934..389150 1..217 99 -> Plus
chrX 389502..390402 218..1118 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:23 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 170..553 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:36 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 170..553 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:23:21 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 170..553 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:08 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 170..553 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:15 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 170..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:02 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 2..1119 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:36 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 2..1119 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:21 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 2..1119 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:08 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 2..1119 1..1118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:15 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 2..1119 1..1118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:56 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
X 494901..495117 1..217 99 -> Plus
X 495469..496369 218..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:56 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
X 494901..495117 1..217 99 -> Plus
X 495469..496369 218..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:56 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
X 494901..495117 1..217 99 -> Plus
X 495469..496369 218..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:21 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 388934..389150 1..217 99 -> Plus
arm_X 389502..390402 218..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:39 Download gff for RH02374.complete
Subject Subject Range Query Range Percent Splice Strand
X 502999..503215 1..217 99 -> Plus
X 503567..504467 218..1118 100   Plus

RH02374.hyp Sequence

Translation from 169 to 552

> RH02374.hyp
MEATPGYQDISALEKSVANAGSQLYTMAHKLHAVERSLEQTTMEQMDEME
VLELLESMSEVTNEYQNLRKDIREVQQLQRDVSSSIRYQMRSMQQTFHTL
KQRIASSQKGRKKPEKGLDGAGVGIHE*

RH02374.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-PB 127 CG17778-PB 1..127 1..127 632 100 Plus
CG17778-PA 127 CG17778-PA 1..127 1..127 632 100 Plus

RH02374.pep Sequence

Translation from 169 to 552

> RH02374.pep
MEATPGYQDISALEKSVANAGSQLYTMAHKLHAVERSLEQTTMEQMDEME
VLELLESMSEVTNEYQNLRKDIREVQQLQRDVSSSIRYQMRSMQQTFHTL
KQRIASSQKGRKKPEKGLDGAGVGIHE*

RH02374.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21937-PA 125 GF21937-PA 3..105 4..106 520 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12790-PA 127 GG12790-PA 1..127 1..127 651 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24778-PA 122 GH24778-PA 5..112 6..113 460 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-PB 127 CG17778-PB 1..127 1..127 632 100 Plus
CG17778-PA 127 CG17778-PA 1..127 1..127 632 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15066-PA 128 GI15066-PA 5..126 6..126 492 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20385-PA 136 GL20385-PA 1..107 1..107 491 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14661-PA 136 GA14661-PA 1..107 1..107 490 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19069-PA 127 GM19069-PA 1..127 1..127 651 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14860-PA 126 GJ14860-PA 4..106 5..107 466 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16507-PA 122 GK16507-PA 3..114 6..117 489 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16616-PA 131 GE16616-PA 1..131 1..127 629 94.7 Plus