Clone RH02379 Report

Search the DGRC for RH02379

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:23
Well:79
Vector:pFlc-1
Associated Gene/TranscriptAdgf-D-RA
Protein status:RH02379.pep: gold
Preliminary Size:1137
Sequenced Size:1684

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9621 2002-01-01 Sim4 clustering to Release 2
CG9621 2003-01-01 Sim4 clustering to Release 3
CG9621 2003-08-11 Blastp of sequenced clone
Adgf-D 2008-04-29 Release 5.5 accounting
Adgf-D 2008-08-15 Release 5.9 accounting
Adgf-D 2008-12-18 5.12 accounting

Clone Sequence Records

RH02379.complete Sequence

1684 bp (1684 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010219

> RH02379.complete
GAGTGTGGAAATTGCACAAGCCGTATTCGGTTCGGATTCCAAAGCGGTGG
CCACTATCAGTTGTTTGGCGATCGCCAAGAGCCGCGGATCGAGTCAAATA
CGGCGTACATATCGGAACTGAGATTACTGGATGGCGATGTGGTTTCTAGG
TGCTTTGGTGGCCACCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAG
ATCTACCCTATGAAACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTG
GCCTCGCTGGGTGGCAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAA
CAGCATCCTGATGAACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGA
CGCCGGAGAAGTACGCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTAC
GTCCGGCAGAGCGAGGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGC
CTTTCTGCACGGTCACAATACGGGTATGGTGACTTCACGCTGGATCATAC
AGAATCTGACCACCACCAATAATCTGTACACCTGTCGCAATGTGGATGGA
CTGCTAGTGTTCACCTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAA
TGTGTGCACTGAGAGGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCC
AGCTGGAGAAGCACATCAATATGCACGGACCAAGGCCGGAAGCTCTATTG
CCAAATCGTAAGAAGATTTGGGAGCGCTTTGAGAACATATTTACCACCGT
GGATCGGCTGTATAAATACCGACCCACCTATTGTGCCTATCACAAGCGAA
TGTTGGAGGAACTTTGCGAGGATAACATTATCTATGCCGAGATACGAGCC
TCCCTCTCGCCGCTGTACGACGACAACAATCGAACTCTGAGCACCTTGGA
GGTGGCCAACGAGCTGGAACGGATTGTGGAGGAATTCAAGGCCAAGCACC
ATGACTTCATCGGTGTTAAGGTGATATATGCCAAGCGGAATCGCGCATCC
GAGGAGGAGATGTTGCGCCGAATCACCACTTTTAAGCAGCTGCACCATGC
CAAACCGAACTTTGTGATTGGTTTCGATCTGATTGGTCAGGAGGACACTG
GAGAACCGCTGAACAGGTATATCAACCAACTGTCCGATCTTCCTAGCACG
GCAAACTACTTCTTCCACGCCGGCGAGACGAATTGGAATGGCCGAACGGA
CTGGAACATGATGGACGCCATTCTGCTGAATACGAAGCGGATTGGCCATG
CCTTCGCCCTGCCCAAGCATCCACAATTGTGGTCCACCATCAAGAAGCGT
AACATCGCCATCGAGGTGAATCCCATTTCCAACCAGGTCTTGGGCTTCGT
CTGGGATCTGCGAAATCATCCGGCCAGCTTCCTGATAGCCGAGAACTTTC
CCATCGTTATATCATCCGATGATCCGGGTGTTTGGGGAGCCAAGGGTCTC
AGCTACGATTTCTACTACGCCTTCATGGCCTTGGCTCCGGCGGATGCGGA
TCTGCGCTTTCTCAAGCAGCTGGCCTTGAACTCCATCAAGTACGCCGTTC
TCACCTCGGACGAGAGGCGGAAAATCAATCGGGTATTCCAGCGCAAGTGG
CAGGAGTTTATTGCGAATGTCTTGAATCCAAAATTCTAAGTTCTAAGATT
AAATGCTAGTCTAAATCTAAAAAAAAAAAAAAAA

RH02379.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D.b 2091 Adgf-D.b 408..2075 2..1669 8340 100 Plus
Adgf-D-RA 1844 Adgf-D-RA 161..1828 2..1669 8340 100 Plus
Adgf-D.a 1602 Adgf-D.a 474..1586 557..1669 5565 100 Plus
Adgf-D.a 1602 Adgf-D.a 3..474 2..473 2360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9527977..9528463 1668..1182 2435 100 Minus
chr3R 27901430 chr3R 9529226..9529711 692..207 2325 98.6 Minus
chr3R 27901430 chr3R 9530145..9530349 206..2 1025 100 Minus
chr3R 27901430 chr3R 9528765..9528947 1044..862 915 100 Minus
chr3R 27901430 chr3R 9529003..9529174 862..691 860 100 Minus
chr3R 27901430 chr3R 9528520..9528656 1181..1045 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13703083..13703570 1669..1182 2440 100 Minus
3R 32079331 3R 13704333..13704818 692..207 2430 100 Minus
3R 32079331 3R 13705252..13705456 206..2 1025 100 Minus
3R 32079331 3R 13703872..13704054 1044..862 915 100 Minus
3R 32079331 3R 13704110..13704281 862..691 860 100 Minus
3R 32079331 3R 13703627..13703763 1181..1045 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13443914..13444401 1669..1182 2440 100 Minus
3R 31820162 3R 13445164..13445649 692..207 2430 100 Minus
3R 31820162 3R 13446083..13446287 206..2 1025 100 Minus
3R 31820162 3R 13444703..13444885 1044..862 915 100 Minus
3R 31820162 3R 13444941..13445112 862..691 860 100 Minus
3R 31820162 3R 13444458..13444594 1181..1045 685 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:17:25 has no hits.

RH02379.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:18:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9527996..9528463 1182..1649 100 <- Minus
chr3R 9528520..9528656 1045..1181 100 <- Minus
chr3R 9528765..9528946 863..1044 100 <- Minus
chr3R 9529003..9529172 693..862 100 <- Minus
chr3R 9529226..9529711 207..692 98 <- Minus
chr3R 9530145..9530349 1..206 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 131..1639 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:50:58 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 131..1639 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:39:35 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 131..1639 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:23 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 131..1639 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:38 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 131..1639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:14:43 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 2..1669 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:50:58 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 2..1669 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:39:35 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1613 56..1668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 2..1669 1..1668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:38 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1613 56..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13703084..13703570 1182..1668 100 <- Minus
3R 13703627..13703763 1045..1181 100 <- Minus
3R 13703872..13704053 863..1044 100 <- Minus
3R 13704110..13704279 693..862 100 <- Minus
3R 13704333..13704818 207..692 100 <- Minus
3R 13705252..13705456 1..206 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13703084..13703570 1182..1668 100 <- Minus
3R 13703627..13703763 1045..1181 100 <- Minus
3R 13703872..13704053 863..1044 100 <- Minus
3R 13704110..13704279 693..862 100 <- Minus
3R 13704333..13704818 207..692 100 <- Minus
3R 13705252..13705456 1..206 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:24 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13703084..13703570 1182..1668 100 <- Minus
3R 13703627..13703763 1045..1181 100 <- Minus
3R 13703872..13704053 863..1044 100 <- Minus
3R 13704110..13704279 693..862 100 <- Minus
3R 13704333..13704818 207..692 100 <- Minus
3R 13705252..13705456 1..206 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:39:35 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9529832..9530001 693..862 100 <- Minus
arm_3R 9528806..9529292 1182..1668 100 <- Minus
arm_3R 9529349..9529485 1045..1181 100 <- Minus
arm_3R 9529594..9529775 863..1044 100 <- Minus
arm_3R 9530055..9530540 207..692 100 <- Minus
arm_3R 9530974..9531178 1..206 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:26 Download gff for RH02379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13446083..13446287 1..206 99   Minus
3R 13443915..13444401 1182..1668 100 <- Minus
3R 13444458..13444594 1045..1181 100 <- Minus
3R 13444703..13444884 863..1044 100 <- Minus
3R 13444941..13445110 693..862 100 <- Minus
3R 13445164..13445649 207..692 100 <- Minus

RH02379.pep Sequence

Translation from 130 to 1638

> RH02379.pep
MAMWFLGALVATVVLLTGSVQATDLPYETLREQIMEAERVASLGGNIWLS
SDEEKANSILMNAKRAEIAEGLKTPEKYAPAMHFFQGRQYVRQSEVFRMI
QKIPKGAFLHGHNTGMVTSRWIIQNLTTTNNLYTCRNVDGLLVFTYDQSG
CHSEVQNVCTERINAEDRGKYERQLEKHINMHGPRPEALLPNRKKIWERF
ENIFTTVDRLYKYRPTYCAYHKRMLEELCEDNIIYAEIRASLSPLYDDNN
RTLSTLEVANELERIVEEFKAKHHDFIGVKVIYAKRNRASEEEMLRRITT
FKQLHHAKPNFVIGFDLIGQEDTGEPLNRYINQLSDLPSTANYFFHAGET
NWNGRTDWNMMDAILLNTKRIGHAFALPKHPQLWSTIKKRNIAIEVNPIS
NQVLGFVWDLRNHPASFLIAENFPIVISSDDPGVWGAKGLSYDFYYAFMA
LAPADADLRFLKQLALNSIKYAVLTSDERRKINRVFQRKWQEFIANVLNP
KF*

RH02379.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18149-PA 499 GF18149-PA 15..499 18..502 2541 94.8 Plus
Dana\GF16876-PA 506 GF16876-PA 15..501 14..498 1151 44.1 Plus
Dana\GF16877-PA 507 GF16877-PA 5..502 5..498 1037 41.2 Plus
Dana\GF23892-PA 557 GF23892-PA 56..539 16..497 945 40.4 Plus
Dana\GF23893-PA 516 GF23893-PA 31..514 21..501 867 37.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17028-PA 500 GG17028-PA 1..500 3..502 2649 97.2 Plus
Dere\GG19793-PA 506 GG19793-PA 1..504 6..501 1150 43.8 Plus
Dere\GG15787-PA 555 GG15787-PA 55..538 16..497 958 41 Plus
Dere\GG15788-PA 520 GG15788-PA 40..519 27..502 909 39.3 Plus
Dere\GG22410-PA 539 GG22410-PA 46..530 21..501 825 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14048-PA 466 GH14048-PA 1..465 40..502 2213 85.2 Plus
Dgri\GH14267-PA 506 GH14267-PA 19..504 21..501 1147 44.9 Plus
Dgri\GH15340-PA 552 GH15340-PA 41..539 7..499 910 37.8 Plus
Dgri\GH15341-PA 508 GH15341-PA 30..504 27..497 840 36.8 Plus
Dgri\GH22920-PA 525 GH22920-PA 15..515 5..501 795 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-PA 502 CG9621-PA 1..502 1..502 2649 100 Plus
Adgf-C-PA 506 CG9345-PA 4..501 9..498 1107 43.8 Plus
Adgf-A-PB 553 CG5992-PB 52..538 13..497 928 40.1 Plus
Adgf-A-PA 553 CG5992-PA 52..538 13..497 928 40.1 Plus
Adgf-B-PA 520 CG5998-PA 40..519 27..502 866 38.8 Plus
Adgf-E-PA 539 CG10143-PA 46..530 21..501 825 37.5 Plus
Adgf-A2-PC 542 CG32178-PC 64..538 30..499 574 31.3 Plus
Adgf-A2-PB 542 CG32178-PB 64..538 30..499 574 31.3 Plus
Adgf-A2-PA 561 CG32178-PA 83..557 30..499 574 31.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24423-PA 501 GI24423-PA 18..500 22..502 2247 82.4 Plus
Dmoj\GI23159-PA 509 GI23159-PA 17..507 19..501 1107 43.2 Plus
Dmoj\GI12945-PA 548 GI12945-PA 39..535 7..497 898 37.1 Plus
Dmoj\GI12946-PA 522 GI12946-PA 39..514 27..498 877 38.3 Plus
Dmoj\GI12943-PA 573 GI12943-PA 73..570 8..498 606 31.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24450-PA 499 GL24450-PA 16..499 19..502 2466 91.7 Plus
Dper\GL23084-PA 514 GL23084-PA 31..509 25..498 1170 45.5 Plus
Dper\GL10635-PA 531 GL10635-PA 29..521 13..501 852 35.9 Plus
Dper\GL18074-PA 425 GL18074-PA 2..410 91..497 829 39.5 Plus
Dper\GL25221-PA 539 GL25221-PA 317..539 280..501 549 48.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21919-PA 499 GA21919-PA 16..499 19..502 2462 91.5 Plus
Dpse\GA27135-PB 506 GA27135-PB 23..501 25..498 1163 45.5 Plus
Dpse\GA19282-PA 551 GA19282-PA 50..536 13..497 937 39.1 Plus
Dpse\GA19286-PA 527 GA19286-PA 33..527 12..501 890 37.7 Plus
Dpse\GA10106-PA 531 GA10106-PA 43..521 27..501 853 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25912-PA 502 GM25912-PA 1..502 1..502 2692 98.6 Plus
Dsec\GM24125-PA 506 GM24125-PA 4..501 9..498 1145 44.5 Plus
Dsec\GM24311-PA 553 GM24311-PA 52..541 13..500 960 40.4 Plus
Dsec\GM24312-PA 520 GM24312-PA 40..519 27..502 892 38.6 Plus
Dsec\GM20196-PA 539 GM20196-PA 46..527 21..498 834 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20479-PA 502 GD20479-PA 1..502 1..502 2696 98.6 Plus
Dsim\GD18924-PA 506 GD18924-PA 3..501 8..498 1141 44.4 Plus
Dsim\GD12381-PA 553 GD12381-PA 52..541 13..500 966 40.6 Plus
Dsim\GD12382-PA 520 GD12382-PA 40..519 27..502 898 39.2 Plus
Dsim\GD25667-PA 539 GD25667-PA 46..528 21..499 825 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14281-PA 501 GJ14281-PA 17..500 21..502 2285 84.1 Plus
Dvir\GJ14473-PA 507 GJ14473-PA 17..505 18..501 1120 43.8 Plus
Dvir\GJ13087-PA 549 GJ13087-PA 39..537 7..499 916 38.4 Plus
Dvir\GJ13088-PA 519 GJ13088-PA 41..515 27..497 861 37.3 Plus
Dvir\GJ21491-PA 530 GJ21491-PA 31..515 21..501 790 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13065-PA 500 GK13065-PA 17..500 19..502 2360 88 Plus
Dwil\GK14194-PA 509 GK14194-PA 24..504 23..498 1144 43.9 Plus
Dwil\GK12327-PA 565 GK12327-PA 66..555 16..501 953 39.4 Plus
Dwil\GK12328-PA 512 GK12328-PA 28..506 23..497 860 38.1 Plus
Dwil\GK19522-PA 537 GK19522-PA 50..525 27..498 857 36.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24420-PA 500 GE24420-PA 1..500 3..502 2685 98.6 Plus
Dyak\GE26291-PA 506 GE26291-PA 4..502 9..499 1172 44.9 Plus
Dyak\GE22124-PA 553 GE22124-PA 55..538 16..497 952 40 Plus
Dyak\GE22125-PA 519 GE22125-PA 35..518 23..502 899 38.7 Plus
Dyak\GE12299-PA 534 GE12299-PA 46..530 21..501 840 37.3 Plus

RH02379.hyp Sequence

Translation from 130 to 1638

> RH02379.hyp
MAMWFLGALVATVVLLTGSVQATDLPYETLREQIMEAERVASLGGNIWLS
SDEEKANSILMNAKRAEIAEGLKTPEKYAPAMHFFQGRQYVRQSEVFRMI
QKIPKGAFLHGHNTGMVTSRWIIQNLTTTNNLYTCRNVDGLLVFTYDQSG
CHSEVQNVCTERINAEDRGKYERQLEKHINMHGPRPEALLPNRKKIWERF
ENIFTTVDRLYKYRPTYCAYHKRMLEELCEDNIIYAEIRASLSPLYDDNN
RTLSTLEVANELERIVEEFKAKHHDFIGVKVIYAKRNRASEEEMLRRITT
FKQLHHAKPNFVIGFDLIGQEDTGEPLNRYINQLSDLPSTANYFFHAGET
NWNGRTDWNMMDAILLNTKRIGHAFALPKHPQLWSTIKKRNIAIEVNPIS
NQVLGFVWDLRNHPASFLIAENFPIVISSDDPGVWGAKGLSYDFYYAFMA
LAPADADLRFLKQLALNSIKYAVLTSDERRKINRVFQRKWQEFIANVLNP
KF*

RH02379.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-PA 502 CG9621-PA 1..502 1..502 2649 100 Plus
Adgf-C-PA 506 CG9345-PA 4..501 9..498 1107 43.8 Plus
Adgf-A-PB 553 CG5992-PB 52..538 13..497 928 40.1 Plus
Adgf-A-PA 553 CG5992-PA 52..538 13..497 928 40.1 Plus
Adgf-B-PA 520 CG5998-PA 40..519 27..502 866 38.8 Plus